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You searched for: Journal Tree genetics & genomes Remove constraint Journal: Tree genetics & genomes Journal name Tree genetics & genomes Remove constraint Journal name: Tree genetics & genomes Publication Year 2016 Remove constraint Publication Year: 2016 Subject apples Remove constraint Subject: apples Text Availability Citation in PubAg Remove constraint Text Availability: Citation in PubAg
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1. Apple NPR1 homologs and their alternative splicing forms may contribute to SA and disease responses

Author:
Junke Zhang; Peng Jiao; Chong Zhang; Xiaolei Tong; Qinping Wei; Lingfei Xu
Source:
Tree genetics & genomes 2016 v.12 no.5 pp. 92
ISSN:
1614-2942
Subject:
Arabidopsis; Diplocarpon mali; Malus baccata; Malus domestica; alternative splicing; amino acid sequences; apples; disease resistance; genes; immune response; leaves; phylogeny; reverse transcriptase polymerase chain reaction; salicylic acid; sequence alignment; signal transduction; systemic acquired resistance; transcription (genetics)
Abstract:
... The non-expressor of pathogenesis-related genes 1 (NPR1) plays essential roles in the salicylic acid (SA) signal pathway and in systemic acquired resistance (SAR) responses. Although a genome-wide analysis of NPR1 gene family has been conducted in some plant species, little is known about these genes in apple (Malus spp.). In this study, eight NPR1 homologs were identified within the apple genome ...
DOI:
10.1007/s11295-016-1050-7

2. Construction of a high density linkage map and its application in the identification of QTLs for soluble sugar and organic acid components in apple

Author:
Baiquan Ma; Shuang Zhao; Benhong Wu; Dongmei Wang; Qian Peng; Albert Owiti; Ting Fang; Liao Liao; Collins Ogutu; Schuyler S. Korban; Shaohua Li; Yuepeng Han
Source:
Tree genetics & genomes 2016 v.12 no.1 pp. 1
ISSN:
1614-2942
Subject:
Malus domestica; apples; chromosome mapping; citric acid; fructose; fruit quality; genetic markers; genotyping; glucose; linkage groups; malic acid; marker-assisted selection; microsatellite repeats; quantitative trait loci; sensory properties; single nucleotide polymorphism; sorbitol; sucrose
Abstract:
... Soluble sugars and organic acids have a strong impact on the overall organoleptic quality of fruits. In this study, we report the identification of quantitative trait loci (QTLs) for individual sugars and organic acids in apple. A high density linkage map of apple was constructed using the 1536 EST-derived SNP GoldenGate genotyping platform. The linkage map consists of 601 molecular markers, inclu ...
DOI:
10.1007/s11295-015-0959-6

3. Development of SNP-based assays for disease resistance and fruit quality traits in apple (Malus × domestica Borkh.) and validation in breeding pilot studies

Author:
Isabelle O. Baumgartner; Markus Kellerhals; Fabrizio Costa; Luca Dondini; Giulia Pagliarani; Roberto Gregori; Stefano Tartarini; Lucie Leumann; François Laurens; Andrea Patocchi
Source:
Tree genetics & genomes 2016 v.12 no.3 pp. 35
ISSN:
1614-2942
Subject:
DNA; Dysaphis plantaginea; Malus domestica; Venturia inaequalis; apples; disease resistance; firmness; fruit quality; genes; genetic markers; genomics; genotyping; marker-assisted selection; pest resistance; planting seed; polymerase chain reaction; powdery mildew; seedlings; single nucleotide polymorphism; sowing; storage quality; texture
Abstract:
... The development of molecular markers linked to specific traits is now routine practice, but the gap between genomics and breeding often delays their application. In the frame of the FP7 European project FruitBreedomics, apple pilot studies were designed to exploit the project’s outcomes towards the practical application of marker-assisted breeding (MAB) programs. The aim of this pilot study was to ...
DOI:
10.1007/s11295-016-0994-y

4. Fine mapping of the rosy apple aphid resistance locus Dp-fl on linkage group 8 of the apple cultivar ‘Florina’

Author:
G. Pagliarani; E. Dapena; M. Miñarro; C. Denancé; Y. Lespinasse; E. Rat-Morris; M. Troggio; C. E. Durel; S. Tartarini
Source:
Tree genetics & genomes 2016 v.12 no.3 pp. 56
ISSN:
1614-2942
Subject:
Dysaphis plantaginea; apples; chromosome mapping; cultivars; fruit growing; genes; genetic markers; insect pests; linkage groups; loci; marker-assisted selection; microsatellite repeats; pest resistance; plant damage; polymerase chain reaction; single nucleotide polymorphism
Abstract:
... Rosy apple aphid (Dysaphis plantaginea), is one of the major insect pests of apple, causing serious physical and economic damage to fruit production. A dominant resistance gene Dp-fl was previously mapped at the bottom of linkage group LG8 from the cultivar ‘Florina’, linked to the SSR CH01h10. The development of additional genetic markers mapping closer to Dp-fl was needed to position the gene ac ...
DOI:
10.1007/s11295-016-1015-x

5. Genetic architecture of apple fruit quality traits following storage and implications for genetic improvement

Author:
Craig M. Hardner; Kate Evans; Chris Brien; Fred Bliss; Cameron Peace
Source:
Tree genetics & genomes 2016 v.12 no.2 pp. 20
ISSN:
1614-2942
Subject:
Malus domestica; apples; breeding; color; crop production; cultivars; firmness; fruit quality; genetic correlation; genetic improvement; genetic variation; hardness; juiciness; models; prediction; selection response; storage time; sweetness; titratable acidity; Washington (state)
Abstract:
... Accurate prediction of genetic potential and response to selection in breeding requires knowledge of genetic parameters for important selection traits. Data from breeding trials can be used to obtain estimates of these parameters so that predictions are directly relevant to the improvement program. Here, a factor allocation diagram was developed to describe the sampling design used to assess the q ...
DOI:
10.1007/s11295-016-0977-z

6. Genetic pool structure of local apple cultivars from Portugal assessed by microsatellites

Author:
V. Ferreira; A. M. Ramos-Cabrer; V. Carnide; O. Pinto-Carnide; A. Assunção; A. Marreiros; R. Rodrigues; S. Pereira-Lorenzo; I. Castro
Source:
Tree genetics & genomes 2016 v.12 no.3 pp. 36
ISSN:
1614-2942
Subject:
Malus domestica; analysis of variance; apples; correspondence analysis; cultivars; diploidy; gene pool; genetic techniques and protocols; genetic variation; genotype; germplasm; germplasm conservation; homonym; hybridization; landraces; microsatellite repeats; triploidy; Portugal
Abstract:
... A set of 87 apple accessions, located in three Portuguese apple germplasm collections, plus eight reference cultivars, were analyzed using 16 SSRs with the aim of assessing their genetic diversity and structure and evaluating relationships among them. Among the accessions studied, 64 unique genotypes were identified, 51 diploids and 13 putative triploids, revealing 19 groups of synonyms and 4 of h ...
DOI:
10.1007/s11295-016-0997-8

7. Genome-wide identification and expression analysis of the bZIP gene family in apple (Malus domestica)

Author:
Yuan-Yuan Li; Dong Meng; Mingjun Li; Lailiang Cheng
Source:
Tree genetics & genomes 2016 v.12 no.4 pp. 82
ISSN:
1614-2942
Subject:
Malus domestica; apples; basic-leucine zipper transcription factors; drought; fruiting; gene expression regulation; genes; growth and development; leaves; leucine zipper; models; plant growth; quantitative polymerase chain reaction; reverse transcriptase polymerase chain reaction; roots; salt stress; stress response; stress tolerance; transcription (genetics)
Abstract:
... The basic leucine zipper (bZIP) family is one of the largest transcription factor (TF) families in plants, which play crucial roles in plant growth and development. bZIP proteins are involved in multiple biological processes, as well as responses to various biotic/abiotic stresses. Although genome-wide analysis of the bZIP gene family has been conducted in several plant species, only few comprehen ...
DOI:
10.1007/s11295-016-1043-6

8. Homologs of the FB_MR5 fire blight resistance gene of Malus ×robusta 5 are present in other Malus wild species accessions

Author:
Thomas Wöhner; Erik Szentgyörgyi; Andreas Peil; Klaus Richter; Magda-Viola Hanke; Henryk Flachowsky
Source:
Tree genetics & genomes 2016 v.12 no.1 pp. 2
ISSN:
1614-2942
Subject:
Erwinia amylovora; Malus baccata; Malus domestica; Malus prunifolia; alleles; apples; breeding; genotype; germplasm conservation; loci; microsatellite repeats; pathogens; sequence analysis; Korean Peninsula
Abstract:
... Breeding for fire blight resistance is a major goal of nearly all apple breeding programs worldwide. Resources for resistance can be found in Malus wild species accession such as Malus ×robusta 5 (Mr5) which carries the FB_MR5 CC-NBS-LRR fire blight resistance gene. To study the occurrence of FB_MR5 in other genetic resources of Malus, a total of 394 wild species accessions of three international ...
DOI:
10.1007/s11295-015-0962-y

9. Structural genomics and transcriptional characterization of the Dormancy-Associated MADS-box genes during bud dormancy progression in apple

Author:
Diogo Denardi Porto; Vítor da Silveira Falavigna; Rafael Augusto Arenhart; Pâmela Perini; Vanessa Buffon; Rafael Anzanello; Henrique Pessoa dos Santos; Flávio Bello Fialho; Paulo Ricardo Dias de Oliveira; Luís Fernando Revers
Source:
Tree genetics & genomes 2016 v.12 no.3 pp. 46
ISSN:
1614-2942
Subject:
messenger RNA; buds; apples; loci; peaches; perennials; seeds; introns; pears; transcription (genetics); temperate zones; cold treatment; genomics; Malus domestica; dormancy; gene expression regulation; apricots
Abstract:
... The molecular control of bud dormancy establishment and release is still not well understood, although some genes have already been demonstrated to play important roles in this process. The dormancy-associated MADS-box (DAM) genes were first identified in the peach EVERGROWING locus and are considered the main regulators of bud dormancy control. In this work, the apple (Malus × domestica Borkh.), ...
DOI:
10.1007/s11295-016-1001-3

10. Sylleptic branching in winter-headed apple (Malus × domestica) trees: accession-dependent responses and their relationships with other tree architectural characteristics

Author:
Stijn Vanderzande; Niek Hias; Daniel Edge-Garza; Evelyne Costes; Mark W. Davey; Johan Keulemans
Source:
Tree genetics & genomes 2016 v.12 no.5 pp. 87
ISSN:
1614-2942
Subject:
Malus domestica; apical dominance; apples; branches; branching; cultivars; genetic background; growth traits; heading; orchards; statistical models; trees
Abstract:
... Well-feathered apple trees are essential for commercial orchards to optimize yields. However, most cultivars do not form these sylleptic branches readily in commercial nurseries due to high apical dominance. Several treatments exist to promote their formation in the nurseries, one of which is heading. However, not all cultivars are expected to react similarly to these treatments. We studied the br ...
DOI:
10.1007/s11295-016-1046-3

11. A functional genetic marker for apple red skin coloration across different environments

Author:
David Chagné; Chris Kirk; Natalie How; Claire Whitworth; Cristian Fontic; Gemma Reig; Greg Sawyer; Simon Rouse; Lara Poles; Susan E. Gardiner; Satish Kumar; Richard Espley; Richard K. Volz; Michela Troggio; Ignasi Iglesias
Source:
Tree genetics & genomes 2016 v.12 no.4 pp. 67
ISSN:
1614-2942
Subject:
Malus domestica; apples; color; genetic markers; linkage groups; marker-assisted selection; pigmentation; quantitative polymerase chain reaction; quantitative trait loci; seedlings; single nucleotide polymorphism; summer; temperate zones; temperature; Italy; New Zealand; Spain
Abstract:
... The red skin color desired by most apple consumers is not easy to achieve in warm climates, as the expression of MYB10, which regulates red pigmentation in apple, is influenced negatively by high temperatures. We describe the development and validation of a genetic marker for red skin coloration that effectively predicts color in a warm summer environment in Spain, as well as more temperate climat ...
DOI:
10.1007/s11295-016-1025-8

12. A high-density genetic linkage map of bronze loquat based on SSR and RAPD markers

Author:
Shinji Fukuda; Keiichiro Ishimoto; Shusei Sato; Shingo Terakami; Naofumi Hiehata; Toshiya Yamamoto
Source:
Tree genetics & genomes 2016 v.12 no.4 pp. 80
ISSN:
1614-2942
Subject:
Eriobotrya japonica; Malus; Pyrus; apples; chromosome mapping; genes; genetic distance; linkage groups; loci; loquats; microsatellite repeats; pears; quantitative trait loci; random amplified polymorphic DNA technique; Taiwan
Abstract:
... We constructed a high-density genetic linkage map of bronze loquat (Eriobotrya deflexa) by using a three-way cross of loquat (Eriobotrya japonica) × (loquat × bronze loquat) and simple sequence repeat (SSR) and random amplified polymorphic DNA (RAPD) markers. The positions of the SSR loci used in this study were previously identified on reference maps of pears (Pyrus spp.) and apples (Malus spp.). ...
DOI:
10.1007/s11295-016-1040-9