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You searched for: Journal name Archives of virology Remove constraint Journal name: Archives of virology Publication year rev 7978-2022 Remove constraint Publication year rev: 7978-2022 Source 2022 v.167 no.2 Remove constraint Source: 2022 v.167 no.2
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1. Analysis of the long noncoding RNA profiles of RD and SH-SY5Y cells infected with coxsackievirus B5, using RNA sequencing

Author:
Peiying Teng; Heng Yang; Jing Li; Fan Yang; Wei Chen
Source:
Archives of virology 2022 v.167 no.2 pp. 367-376
ISSN:
0304-8608
Subject:
gene ontology; humans; mouth; non-coding RNA; virus replication
Abstract:
... Hand, foot, and mouth disease caused by coxsackievirus B5 (CV-B5) is a considerable threat to infant health, especially with regard to neurological damage. Long noncoding RNAs (lncRNAs) are known to play pivotal roles in virus-host interactions. However, the roles of lncRNAs in CV-B5-host interactions have not yet been elucidated. In the current study, we used RNA sequencing to determine the expre ...
DOI:
10.1007/s00705-021-05313-6

2. Characterization and genome analysis of two new Aeromonas hydrophila phages, PZL-Ah1and PZL-Ah8

Author:
Huabo Yu; Chao Feng; Sayed Haidar Abbas Raza; Liang Zhang; Teng Chi; Yanling Qi; Kaixiang Jia; Yang Zhang; Junfeng Wei; Aidong Qian; Wuwen Sun; Xiaofeng Shan; Lei Zhang
Source:
Archives of virology 2022 v.167 no.2 pp. 669-673
ISSN:
0304-8608
Subject:
Aeromonas hydrophila; DNA; Podoviridae; aquaculture; bacteriophages; databases; fish; host range; livestock; opportunistic pathogens; phage therapy; sequence analysis; transmission electron microscopy; virology
Abstract:
... Aeromonas hydrophila (A. hydrophila) is an opportunistic pathogen of fish, humans, and livestock, and has a severe negative impact on aquaculture development. Phage therapy is considered an alternative strategy for controlling bacterial infections and contamination. In this study, we isolated and characterized the genomes of two A. hydrophila-specific phages, PZL-Ah1 and PZL-Ah8, which, based on t ...
DOI:
10.1007/s00705-021-05345-y

3. Characterization of a novel Vibrio parahaemolyticus host-phage pair and antibacterial effect against the host

Author:
Chao Gao; Xiaobo Yang; Chen Zhao; Chenyu Li; Shang Wang; Xi Zhang; Bin Xue; Zhuosong Cao; Hongrui Zhou; Yutong Yang; Zhiqiang Shen; Pingfeng Yu; Jingfeng Wang; Lingli Li; Zhiguang Niu; Zhigang Qiu
Source:
Archives of virology 2022 v.167 no.2 pp. 531-544
ISSN:
0304-8608
Subject:
Myoviridae; Vibrio parahaemolyticus; antibacterial properties; bacteria; bacteriophages; brackish water; carbon; coasts; enzyme activity; flagellum; freshwater; host range; human health; marine environment; microbial ecology; multiple drug resistance; organic matter; pH; pathogens; salinity; seawater; temperature; virology; virulence; China
Abstract:
... Vibrio parahaemolyticus is a widely recognized pathogen that has caused numerous outbreaks and is prevalent in the marine environment. In this study, we investigated the characteristics of the novel V. parahaemolyticus strain BTXS2 and its associated phage, VB_VpP_BT-1011, isolated from the Bohai Coast (Tianjin, China). Strain BTXS2 is a short coryneform bacterium with a terminal flagellum and is ...
DOI:
10.1007/s00705-021-05278-6

4. Comparative genomic analysis of dwarf Vibrio myoviruses defines a conserved gene cluster for successful phage infection

Author:
Dimitrios Skliros; Efthymios Karpouzis; Chrysanthi Kalloniati; Pantelis Katharios; Emmanouil Flemetakis
Source:
Archives of virology 2022 v.167 no.2 pp. 501-516
ISSN:
0304-8608
Subject:
DNA; Myoviridae; Vibrio; aquaculture; bacteriophages; fish; genetic databases; genomics; lysogeny; morphogenesis; morphs; multigene family; nucleotide sequences; phylogeny; virion; virology
Abstract:
... Tailed bacteriophages have been at the center of attention, not only for their ability to infect and kill pathogenic bacteria but also due to their peculiar and intriguing complex contractile tail structure. Tailed bacteriophages with contractile tails are known to have a Myoviridae morphotype and are members of the order Caudovirales. Large bacteriophages with a genome larger than 150 kbp have be ...
DOI:
10.1007/s00705-021-05340-3

5. Comparison of the pathogenicity of porcine reproductive and respiratory syndrome virus (PRRSV)-1 and PRRSV-2 in pregnant sows

Author:
Chang-Gi Jeong; Salik Nazki; Seung-Chai Kim; Amina Khatun; Yun-Hee Noh; Dong-Uk Lee; Sang Chul Kang; Byoung-Joo Seo; Myeon-Sik Yang; Sim-In Lee; In-Joong Yoon; Bumseok Kim; Won-Il Kim
Source:
Archives of virology 2022 v.167 no.2 pp. 425-439
ISSN:
0304-8608
Subject:
Betaarterivirus suid 1; Betaarterivirus suid 2; birth weight; cesarean section; endometrium; histopathology; models; myometrium; pathogenicity; porcine reproductive and respiratory syndrome; virology; viruses
Abstract:
... To date, few studies related to the evaluation of the pathogenicity of different PRRSV isolates using a reproductive model have been undertaken, and the main focus has remained on respiratory models using young pigs. This study aimed to evaluate the pathogenicity of two PRRSV-1 isolates (D40 and CBNU0495) and two PRRSV-2 isolates (K07-2273 and K08-1054) in a reproductive model. Pregnant sows were ...
DOI:
10.1007/s00705-021-05303-8

6. Complete genome sequence of a novel mitovirus detected in Paris polyphylla var. yunnanensis

Author:
Zeli Chen; Lu Chen; Rex Frimpong Anane; Zhe Wang; Like Gao; Shangyun Li; Guosong Wen; Daihong Yu; Mingfu Zhao
Source:
Archives of virology 2022 v.167 no.2 pp. 645-650
ISSN:
0304-8608
Subject:
Mitovirus; RNA-directed RNA polymerase; amino acids; genome; molecular weight; nucleotides; phylogeny; sequence analysis; virology; China
Abstract:
... Paris mitovirus 1 (ParMV1) is a positive-sense RNA virus that was detected in diseased Paris polyphylla var. yunnanensis plants in Wenshan, Yunnan. The complete genome sequence of ParMV1 is 2,751 nucleotides in length, and the genome structure is typical of mitoviruses. The ParMV1 genome has a single open reading frame (ORF; nt 358-2,637) that encodes an RNA-dependent RNA polymerase (RdRp) with a ...
DOI:
10.1007/s00705-021-05339-w

7. Complete genome sequence of a novel partitivirus infecting the phytopathogenic fungus Alternaria tenuissima

Author:
Xiangyu Wang; Zhihao Ma; Rong Li; Tao Zhou; Can Zhao; Xuehong Wu
Source:
Archives of virology 2022 v.167 no.2 pp. 635-639
ISSN:
0304-8608
Subject:
Alternaria tenuissima; Colletotrichum; Partitiviridae; RNA-directed RNA polymerase; coat proteins; double-stranded RNA; genome; leaf blight; molecular weight; muskmelons; mycoviruses; phylogeny; plant pathogenic fungi; sequence analysis; virology; China
Abstract:
... In the present study, a novel double-stranded RNA (dsRNA) mycovirus designated as "Alternaria tenuissima partitivirus 2" (AttPV2), was isolated from Alternaria tenuissima strain BJ-SY-1, a phytopathogenic fungus causing muskmelon leaf blight in Beijing municipality of China. The genome of AttPV2 comprises two dsRNA segments. The larger segment is 1829 bp in length and has a single open reading fra ...
DOI:
10.1007/s00705-021-05332-3

8. Complete genome sequence of a novel secovirid infecting cassava in the Americas

Author:
Ana M. Leiva; Jenyfer Jimenez; Hector Sandoval; Shirley Perez; Wilmer J. Cuellar
Source:
Archives of virology 2022 v.167 no.2 pp. 665-668
ISSN:
0304-8608
Subject:
RNA; Torradovirus; cassava; nanopores; nucleotides; polyproteins; viral genome; virology; viruses; Colombia
Abstract:
... We report the complete genome sequence of a field isolate of a novel bipartite secovirid infecting cassava in Colombia, provisionally named "cassava torrado-like virus" (CsTLV). The genome sequence was obtained using Oxford Nanopore Technology, and the 5’ ends were confirmed by RACE. The RNA1 is 7252 nucleotides (nt) long, encoding a polyprotein of 2336 amino acids (aa) containing the typical “rep ...
DOI:
10.1007/s00705-021-05325-2

9. Complete nucleotide sequence of sweetbriar rose curly-top associated virus, a tentative member of the genus Waikavirus

Author:
Joe Tang; Catia Delmiglio; Lisa Ward; Jeremy Thompson
Source:
Archives of virology 2022 v.167 no.2 pp. 651-654
ISSN:
0304-8608
Subject:
Rosa rubiginosa; Waikavirus; nucleotide sequences; phylogeny; virology; viruses
Abstract:
... A novel virus, tentatively named “sweetbriar rose curly-top associated virus” (SRCTaV), was identified in sweetbriar rose (Rosa rubiginosa) using high-throughput sequencing. The complete genome sequence of SRCTaV was determined and characterized. Phylogenetic analysis revealed that SRCTaV is closely related to members of the genus Waikavirus. ...
DOI:
10.1007/s00705-021-05337-y

10. Easily purified baculovirus/insect-system-expressed recombinant hepatitis B virus surface antigen fused to the N- or C-terminus of polyhedrin

Author:
Leonardo A. Silva; Brenda R. Camargo; Ana Carolina Araújo; Taylice Leonel Batista; Bergmann M. Ribeiro; Daniel M. P. Ardisson-Araújo
Source:
Archives of virology 2022 v.167 no.2 pp. 345-354
ISSN:
0304-8608
Subject:
Autographa californica multiple nucleopolyhedrovirus; DNA; Hepatitis B virus; antibodies; blood serum; genes; hepatitis B antigens; heterologous gene expression; humans; surface antigens; virion; virology
Abstract:
... Baculoviruses are circular double-stranded DNA viruses that infect insects and are widely used as the baculoviral expression vectors (BEVs), which provide a eukaryotic milieu for heterologous expression. The most frequently used vector is based on Autographa californica multiple nucleopolyhedrovirus (AcMNPV). However, purification of recombinant proteins produced using BEVs is laborious, time-cons ...
DOI:
10.1007/s00705-021-05305-6

11. Emergence of two distinct variants of SARS-CoV-2 and an explosive second wave of COVID-19: the experience of a tertiary care hospital in Pune, India

Author:
Shubham Shrivastava; Suhas T. Mhaske; Meera S. Modak; Rashmi G. Virkar; Shamburaje S. Pisal; Akhilesh Chandra Mishra; Vidya A. Arankalle
Source:
Archives of virology 2022 v.167 no.2 pp. 393-403
ISSN:
0304-8608
Subject:
COVID-19 infection; Severe acute respiratory syndrome coronavirus 2; genome; hospitals; neutralization; prospective studies; virology; viruses; California; India
Abstract:
... The emergence of novel variants of SARS-CoV-2 in several countries has been associated with increased transmissibility or reduced neutralization potential of antibodies against the Wuhan virus (wild type). From August 2021 onwards, India experienced a progressive decline in the number of active SARS-CoV-2 infections, indicative of a downward trend in the explosive second wave. This prospective stu ...
DOI:
10.1007/s00705-021-05320-7

12. Epidemiological investigation and genetic characterization of porcine astrovirus genotypes 2 and 5 in Yunnan province, China

Author:
Keqing Ren; Rong Wang; Xiao Liu; Yinghua Liu; Jintao Zhang; Junyu Bi; Lianfeng Zhao; Zhigang Guo; Jianping Liu; Gefen Yin
Source:
Archives of virology 2022 v.167 no.2 pp. 355-366
ISSN:
0304-8608
Subject:
Bocaparvovirus; Mamastrovirus 3; coat proteins; diarrhea; epidemiological studies; humans; phylogeny; public health; virology; China
Abstract:
... Astroviruses (AstVs) are among the most important viruses causing diarrhea in human infants and many animals, posing a threat to public health safety and a burden on the economy. Five porcine AstV (PAstV) genotypes have been identified in various countries, including China. However, the epidemiology of PAstV in Yunnan province, China, remains unknown. In this study, 489 fecal samples from pigs in ...
DOI:
10.1007/s00705-021-05311-8

13. Genetic characteristics of spring viraemia of carp virus strains Kirov/08 and Orenburg/14

Author:
A. V. Perchun; D. K. Pavlov; V. P. Melnikov; A. A. Antonychev; N. G. Zinyakov; F. I. Korennoy; N. V. Moroz; I. A. Chvala; A. E. Metlin
Source:
Archives of virology 2022 v.167 no.2 pp. 681-685
ISSN:
0304-8608
Subject:
Carp sprivivirus; Russia; nucleotide sequences; phylogeny; sequence analysis; virology; Moldova; Ukraine
Abstract:
... The paper presents the genetic characteristics of two strains of spring viraemia of carp virus (SVCV), Kirov/08 and Orenburg/14, isolated in the Kirov and Orenburg oblasts of the Russian Federation, respectively. Nucleotide sequence analysis of a 516-bp fragment of the G genes of Kirov/08 and Orenburg/14 showed 9.5% divergence. Phylogenetic analysis demonstrated a close relationship of these strai ...
DOI:
10.1007/s00705-021-05329-y

14. Genomic characterization of bacteriophage pSal-SNUABM-01, a novel elongated-head phage infecting Salmonella sp.

Author:
Jun Kwon; Sang Guen Kim; Sib Sankar Giri; Hyoun Joong Kim; Sang Wha Kim; Jeong Woo Kang; Sung Bin Lee; Won Jun Jung; Cheng Chi; Se Chang Park
Source:
Archives of virology 2022 v.167 no.2 pp. 655-658
ISSN:
0304-8608
Subject:
Podoviridae; Salmonella; bacteriophages; genome; genomics; head; new genus; phylogeny; public health; salmonellosis; serotypes; tail; transmission electron microscopy; virology; virulence
Abstract:
... Salmonellosis is a disease of critical concern for public health, and the use of bacteriophages is among the most promising approaches to combating Salmonella. As Salmonella has various serotypes and strains, and bacteriophages are virulent to specific hosts, it is important to isolate phages and evaluate interactions with their hosts. In the present study, a novel Salmonella-infecting bacteriopha ...
DOI:
10.1007/s00705-021-05342-1

15. Genomic characterization of grapevine viruses N and O: novel vitiviruses from South Africa

Author:
David A. Read; Genevieve D. Thompson; Nathan Le Cordeur; Dirk Swanevelder; Gerhard Pietersen
Source:
Archives of virology 2022 v.167 no.2 pp. 611-614
ISSN:
0304-8608
Subject:
Grapevine virus E; Vitis; amino acids; cultivars; genomics; surveys; virology; viruses; South Africa
Abstract:
... A survey was performed on a Vitis cultivar collection in Stellenbosch, South Africa. Metaviromes were generated for each cultivar, using an RNAtag-seq workflow. Analysis of assembled contigs indicated the presence of two putatively novel members of the genus Vitivirus, provisionally named "grapevine virus N" (GVN) and "grapevine virus O" (GVO). Comparisons of amino acid sequences showed that GVN a ...
DOI:
10.1007/s00705-021-05333-2

16. Identification and complete genome sequence of mulberry cryptic virus 1

Author:
Jinhong Yang; Yunwu Peng; Weiqing Kong
Source:
Archives of virology 2022 v.167 no.2 pp. 687-690
ISSN:
0304-8608
Subject:
Morus alba; RNA-directed RNA polymerase; coat proteins; data collection; genome; mulberries; nucleotide sequences; phylogeny; transcriptome; virology; viruses
Abstract:
... A cryptic virus, named mulberry cryptic virus 1 (MuCV1), was identified in a mulberry (Morus alba) transcriptome dataset and confirmed using RACE methods. The genome of MuCV1 is composed of two double-stranded RNAs, 1605 bp and 1627 bp in size, encoding an RNA-dependent RNA polymerase (RdRp) and a coat protein (CP), respectively. The 5′-AGAAUU-3′ sequence in the 5′ untranslated region was conserve ...
DOI:
10.1007/s00705-021-05350-1

17. Identification and genome analysis of a tomato zonate spot virus isolate from Bidens pilosa

Author:
Tengzhi Xu; Lei Lei; Xiangru Chen; Rongyu Li; Xiaomao Wu; Youhua Long; Meng-ao Jia
Source:
Archives of virology 2022 v.167 no.2 pp. 625-630
ISSN:
0304-8608
Subject:
Bidens pilosa; Potyviridae; RNA; Tomato zonate spot virus; amino acid sequences; amino acids; genome; phylogeny; sequence analysis; tomatoes; virology; weeds
Abstract:
... Bidens pilosa is a weed species that invades crop areas in tropical and subtropical regions. To date, only two potyviruses have been reported to infect B. pilosa. Here, we report the complete genome sequence of a tomato zonate spot tospovirus (TZSV) isolate from Bidens named TZSV-Bidens. The tripartite RNA of the TZSV-Bidens genome contains L, M, and S segments that are 8912, 4724, and 2997 nt in ...
DOI:
10.1007/s00705-021-05330-5

18. Identification of a novel alphaendornavirus from Lonicera maackii

Author:
Zheng Dong; Hang Yin; Xulong Wang; Shuhao Lu; Wenjie Zuo; Zhibin Liu; Yongqiang Li
Source:
Archives of virology 2022 v.167 no.2 pp. 675-679
ISSN:
0304-8608
Subject:
Lonicera maackii; RNA; RNA-directed RNA polymerase; Vicia faba alphaendornavirus; chlorosis; genome; host plants; leaves; phylogeny; polyproteins; virology; China
Abstract:
... A new alphaendornavirus, tentatively named “Lonicera maackii alphaendornavirus” (LmEV), was identified in a Lonicera maackii plant in Beijing, China, with leaf abnormality of interveinal chlorosis, and its complete genome sequence was determined using small-RNA deep sequencing. The RNA genome of LmEV is 16,176 nt in length and contains a large open reading frame encoding a polyprotein of 5363 aa w ...
DOI:
10.1007/s00705-021-05347-w

19. Infectivity and antigenicity of pseudoviruses with high-frequency mutations of SARS-CoV-2 identified in Portugal

Author:
Hai-xin Wang; Li Zhang; Zi-teng Liang; Jian-hui Nie; Jia-jing Wu; Qian-qian Li; Ru-xia Ding; Yue Zhang; Guo-qing Chen; You-chun Wang; Hui-guo Wang; Wei-jin Huang
Source:
Archives of virology 2022 v.167 no.2 pp. 459-470
ISSN:
0304-8608
Subject:
Severe acute respiratory syndrome coronavirus 2; blood serum; epidemiological studies; human health; immunity; mice; mutants; mutation; neutralization; pathogenicity; virology; Portugal
Abstract:
... Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has had a major impact on global human health. During the spread of SARS-CoV-2, weakened host immunity and the use of vaccines with low efficacy may result in the development of more-virulent strains or strains with resistance to existing vaccines and antibodies. The prevalence of SARS-CoV-2 mutant strains differs between regions, and th ...
DOI:
10.1007/s00705-021-05327-0

20. Insights into the multifunctional roles of geminivirus-encoded proteins in pathogenesis

Author:
Ragunathan Devendran; Tsewang Namgial; Kishore Kumar Reddy; Manish Kumar; Fauzia Zarreen; Supriya Chakraborty
Source:
Archives of virology 2022 v.167 no.2 pp. 307-326
ISSN:
0304-8608
Subject:
Geminiviridae; genome; metabolism; pathogenesis; satellite DNA; virology; viruses
Abstract:
... Geminiviruses are a major threat to agriculture in tropical and subtropical regions of the world. Geminiviruses have small genome with limited coding capacity. Despite this limitation, these viruses have mastered hijacking the host cellular metabolism for their survival. To compensate for the small size of their genome, geminiviruses encode multifunctional proteins. In addition, geminiviruses asso ...
DOI:
10.1007/s00705-021-05338-x