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- Author:
- Rossato, Maurício; Souza, Caroline Amaral; Melo, Fernando Lucas; Orilio, Anelise Franco; Resende, Renato Oliveira; Ribeiro, Simone Graça; Naito, Fernanda Yuri Borges; Ribeiro, Gilvan Pio; Andrade, Genira Pereira; Pereira-Carvalho, Rita Cássia
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2175-2178
- ISSN:
- 0304-8608
- Subject:
- Ipomoea; RNA; Sweet potato chlorotic stunt virus; coat proteins; genes; genetic distance; genomics; grafting (plants); open reading frames; pathogens; phylogeny; sequence analysis; sweet potatoes; Brazil
- Abstract:
- ... Sweet potato chlorotic stunt virus (SPCSV; genus Crinivirus, family Closteroviridae), is an economically important pathogen of sweet potato. In the present work, the nucleotide sequences of two RNA segments of SPCSV (isolate SPCSV-UNB-01) were determined by MiSeq Illumina sequencing of samples of sweet potato plants grafted onto Ipomoea setosa. A comparative analysis of the genome organization of ...
- DOI:
- 10.1007/s00705-019-04281-2
-
http://dx.doi.org/10.1007/s00705-019-04281-2
- Author:
- Matsumoto, Takashi; Sato, Masahiko; Nishizono, Akira; Ahmed, Kamruddin
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2179-2182
- ISSN:
- 0304-8608
- Subject:
- Chiroptera; Circovirus; genome; nucleotide sequences; nucleotides; sequence analysis; viruses; Japan
- Abstract:
- ... We identified two novel circoviruses, HK02976 and HK00220, in oral swabs from bats. The size of their full genome was 2,010 nucleotides (nt). The full-genome sequence of our strains shared 96.1% nucleotide sequence identity with each other, and 39.9%–69.5% identity with bat-associated circoviruses (BatACVs)1–9. Based on the species demarcation threshold for viruses of the family Circoviridae, whic ...
- DOI:
- 10.1007/s00705-019-04286-x
-
http://dx.doi.org/10.1007/s00705-019-04286-x
- Author:
- Zarifi, Fatemeh; Nakhaei, Peyman; Nourani, Hossein; Mirshokraei, Pezhman; Razmyar, Jamshid
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2049-2059
- ISSN:
- 0304-8608
- Subject:
- Canarypox virus; Pigeonpox virus; chick embryos; chorioallantoic membrane; cross infection; electron microscopy; fibroblasts; genes; genetic variation; histopathology; host specificity; inclusion bodies; nucleotide sequences; phylogeny; pigeons; polymerase chain reaction; sequence analysis; viral growth; virion; virus replication; viruses; Iran
- Abstract:
- ... Avipoxviruses (APVs) are large DNA viruses that are detected widely in many species of birds. Little information is available regarding genetic variations in these host-specific viruses. In the present study, nine canarypox virus and five pigeonpox virus isolates were collected from northeastern Iran and isolated via the chorioallantoic membrane of chicken embryos. Further investigations were cond ...
- DOI:
- 10.1007/s00705-019-04277-y
-
http://dx.doi.org/10.1007/s00705-019-04277-y
- Author:
- Chen, Jui-Kai; Hsiao, Chiaolong; Wu, Jian-Shin; Lin, Shin-Yi; Wang, Chi-Young
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2091-2106
- ISSN:
- 0304-8608
- Subject:
- Beak and feather disease virus; DNA; DNA fragmentation; adenosinetriphosphatase; divalent metals; enzyme activity; enzyme inhibitors; genes; guanosinetriphosphatase; magnesium; manganese; metal ions; mutants; oligonucleotides; proteins; replication origin; site-directed mutagenesis
- Abstract:
- ... Beak and feather disease virus (BFDV) belongs to the family Circoviridae. A rolling-circle replication strategy based on a replication-associated protein (Rep) has been proposed for BFDV. The Rep gene of BFDV was expressed and purified, and it was shown to cleave short oligonucleotides containing the conserved nonanucleotide sequence found in the replication origin of circoviruses. This endonuclea ...
- DOI:
- 10.1007/s00705-019-04292-z
-
http://dx.doi.org/10.1007/s00705-019-04292-z
- Author:
- Pulkkinen, Elsi; Wicklund, Anu; Oduor, Joseph M. O.; Skurnik, Mikael; Kiljunen, Saija
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2197-2199
- ISSN:
- 0304-8608
- Subject:
- Acinetobacter baumannii; Myoviridae; amino acid sequences; bacteriophages; genes; host range; hosts; phage therapy; phylogeny
- Abstract:
- ... We present here the isolation and characterization of Acinetobacter pittii phage vB_ApiM_fHyAci03 (fHyAci03), which belongs to the family Myoviridae. The fHyAci03 genome was found to be 165,975 bp in length and predicted to contain 255 genes. While the whole genome was 92.4% identical to Acinetobacter baumannii phage KARL-1, phylogenetic analysis based on phage long distal tail fiber amino acid se ...
- DOI:
- 10.1007/s00705-019-04284-z
-
http://dx.doi.org/10.1007/s00705-019-04284-z
- Author:
- Wang, Qian; Ji, Feng; Wang, Suting; Lin, Xiaojuan; Tao, Zexin; Xu, Aiqiang
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2183-2186
- ISSN:
- 0304-8608
- Subject:
- Enterovirus C; genetic variation; genome; monitoring; nucleotide sequences; paralysis; phylogeny; serotypes; sewage; China
- Abstract:
- ... Enterovirus C96 (EV-C96) is a newer member of the species Enterovirus C. In this study, we determined the complete genome sequences of three EV-C96 isolates, one recovered from domestic sewage in 2013 and the other two isolated during surveillance of acute flaccid paralysis cases in 1991 and 2009, respectively. The complete genome sequences of these isolates were 75.6–84.2% identical to each other ...
- DOI:
- 10.1007/s00705-019-04291-0
-
http://dx.doi.org/10.1007/s00705-019-04291-0
- Author:
- Zheng, Fan; Xu, Gang; Zhou, Jia; Xie, Changping; Cui, Hongguang; Miao, Weiguo; Kang, Zhensheng; Zheng, Li
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2209-2213
- ISSN:
- 0304-8608
- Subject:
- Colletotrichum acutatum; Curcuma wenyujin; Gammapartitivirus; Phoma; RNA-directed RNA polymerase; Ustilaginoidea virens; coat proteins; double-stranded RNA; genome; leaf blight; mycoviruses; open reading frames; phylogeny; polypeptides; sequence homology; virion
- Abstract:
- ... The complete genome of a double-stranded RNA (dsRNA) mycovirus, Phoma matteuccicola partitivirus 1 (PmPV1) was sequenced. It consists of two dsRNA segments, 1664 bp (dsRNA-1) and 1383 bp (dsRNA-2) in length, each containing a single open reading frame (ORF) potentially encoding a 46.78-kDa protein and a 40.92-kDa protein, respectively. dsRNA-1 encodes a putative polypeptide with a conserved RNA-de ...
- DOI:
- 10.1007/s00705-019-04314-w
-
http://dx.doi.org/10.1007/s00705-019-04314-w
- Author:
- Peng, Bin; Kang, Baoshan; Wu, Huijie; Liu, Lifeng; Liu, Liming; Fei, Zhangjun; Hong, Ni; Gu, Qinsheng
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2187-2191
- ISSN:
- 0304-8608
- Subject:
- Chickpea chlorotic stunt virus; Cucurbita pepo; genome; nucleotides; open reading frames; phylogeny; sequence alignment; viruses; zucchini; China
- Abstract:
- ... Here, we report a novel member of the genus Polerovirus, zucchini aphid-borne yellows virus (ZABYV), which was identified in zucchini grown for seed production in the Xinjiang Uygur Autonomous Region, China. The complete nucleotide sequence of the ZABYV genome was determined and found to be 5,792 nucleotides in length, and like those of other poleroviruses, to contain seven open reading frames (OR ...
- DOI:
- 10.1007/s00705-019-04217-w
-
http://dx.doi.org/10.1007/s00705-019-04217-w
- Author:
- Guerra, Sylvia F. S.; Fecury, Priscylla C. M. S.; Bezerra, Delana A. M.; Lobo, Patricia S.; Penha Júnior, Edvaldo T.; Sousa Júnior, Edivaldo C.; Mascarenhas, Joana D’Arc P.; Soares, Luana S.; Justino, Maria Cleonice A.; Linhares, Alexandre C.
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2107-2117
- ISSN:
- 0304-8608
- Subject:
- RNA; Rotavirus; children; feces; gastroenteritis; genotype; infants; monitoring; reverse transcriptase polymerase chain reaction; sequence analysis; vaccines; Brazil
- Abstract:
- ... Species A rotavirus still remains a major cause of acute gastroenteritis in infants and young children. Globally, six genotypes (G1P[8], G2P[4], G3P[8], G4P[8], G9P[8] and G12P[8]) account for >90% of circulating strains; however, genotype G12 in combination with P[6] or P[9] has been detected at increasing rates. We sought to broaden our knowledge about the rotavirus strains circulating during th ...
- DOI:
- 10.1007/s00705-019-04295-w
-
http://dx.doi.org/10.1007/s00705-019-04295-w
- Author:
- Husseini, Abbas Ali; Saeed, Khwaja Mir Islam; Yurdcu, Esra; Sertoz, Rüçhan; Bozdayi, A. Mithat
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2083-2090
- ISSN:
- 0304-8608
- Subject:
- Hepatitis B virus; Hepatitis C virus; Hepatitis delta virus; Human immunodeficiency virus 1; T-lymphocytes; antibodies; automation; chemiluminescence; hepatitis B antigens; humans; immunoassays; leukemia; screening; seroprevalence; viral load; viruses; Afghanistan; Mediterranean region
- Abstract:
- ... Although a few studies have been done on transmissible blood-borne viral infections in high-risk groups, little attention has been given to assessing the infection status of the general population in Afghanistan. To investigate the epidemiological status in the general population, we tested the serological markers of hepatitis B virus (HBV), hepatitis C virus (HCV), hepatitis delta virus (HDV), hu ...
- DOI:
- 10.1007/s00705-019-04285-y
-
http://dx.doi.org/10.1007/s00705-019-04285-y
- Author:
- Farrag, Mohamed A.; Hamed, Maaweya E.; Amer, Haitham M.; Almajhdi, Fahad N.
- Source:
- Archives of virology 2019 v.164 no.8 pp. 1981-1996
- ISSN:
- 0304-8608
- Subject:
- Coronavirinae; Muslims; epidemiological studies; evolution; respiratory tract diseases; viruses; Middle East; Saudi Arabia
- Abstract:
- ... Acute lower respiratory tract infection is a major health problem that affects more than 15% of the total population of Saudi Arabia each year. Epidemiological studies conducted over the last three decades have indicated that viruses are responsible for the majority of these infections. The epidemiology of respiratory viruses in Saudi Arabia is proposed to be affected mainly by the presence and mo ...
- DOI:
- 10.1007/s00705-019-04300-2
-
http://dx.doi.org/10.1007/s00705-019-04300-2
- Author:
- Tian, Zhen; Wang, Meifang; Yao, Naijuan; Yang, Shujuan; Liu, Jinfeng; Yang, Yuan; Chen, Tianyan; Zhao, Yingren; He, Yingli
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2005-2013
- ISSN:
- 0304-8608
- Subject:
- DNA microarrays; Hepatitis B virus; Western blotting; autophagy; chronic hepatitis B; gene expression regulation; genes; genetic factors; hepatoma; liver cirrhosis; lysosomes; messenger RNA; mononuclear leukocytes; patients; spouses
- Abstract:
- ... We previously found that genetic factors are associated with a familial predisposition for developing liver cirrhosis and hepatocellular carcinoma during chronic hepatitis B virus (HBV) infection. Autophagy has been shown to play a role in HBV replication and the course of disease. More than 190 host genes have been identified that modify the process of autophagy, but which of these genes are invo ...
- DOI:
- 10.1007/s00705-019-04248-3
-
http://dx.doi.org/10.1007/s00705-019-04248-3
- Author:
- Mahillon, Mathieu; Decroës, Alain; Liénard, Charlotte; Bragard, Claude; Legrève, Anne
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2215-2219
- ISSN:
- 0304-8608
- Subject:
- Fusarium redolens; agar gel electrophoresis; amino acid sequences; bioinformatics; databases; double-stranded RNA; genome; high-throughput nucleotide sequencing; mycoviruses; open reading frames; proteins; screening; sequence homology
- Abstract:
- ... By screening a collection of Fusarium spp. for the presence of dsRNA, the Fusarium redolens strain A63-1 was found harboring a pattern of multiple dsRNA bands when analyzed by agarose gel electrophoresis. Using NextSeq Illumina sequencing, the full sequences of eight dsRNA molecules were determined, compared to databases, and gathered into a new viral genome. This novel virus shares similarities w ...
- DOI:
- 10.1007/s00705-019-04301-1
-
http://dx.doi.org/10.1007/s00705-019-04301-1
- Author:
- Yang, Caixia; Li, Liang; Hou, Qiushi; Wang, Junzhu; Yu, Meichun; Gang, Shuang; Zhang, Song; Cao, Mengji
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2201-2204
- ISSN:
- 0304-8608
- Subject:
- Cymbidium mosaic virus; Euonymus hamiltonianus var. maackii; amino acid sequences; coat proteins; foliar diseases; genes; leaves; nucleotides; open reading frames; phylogeny; sequence homology; transcriptomics; viruses; China
- Abstract:
- ... In July 2018, a yellow mottle leaf disease was observed on the leaves of Euonymus bungeanus Maxim plants in Liaoning Province of China. Typical flexuous filaments (diameter, 13 nm; length, ca. 500 nm) were observed in extracts on the symptomatic leaves. Transcriptome sequencing indicated the presence of a potexvirus in the infected samples. The complete viral genome, determined to be 6,784 nucleot ...
- DOI:
- 10.1007/s00705-019-04293-y
-
http://dx.doi.org/10.1007/s00705-019-04293-y
- Author:
- Oduor, Joseph Michael Ochieng’; Kiljunen, Saija; Kadija, Ermir; Mureithi, Marianne W.; Nyachieo, Atunga; Skurnik, Mikael
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2171-2173
- ISSN:
- 0304-8608
- Subject:
- DNA; Myoviridae; Staphylococcus; bacteriophages; genome; genomics; sequence analysis
- Abstract:
- ... We report here the annotation of the complete genomes of four novel lytic Staphylococcus phages; Stab20, Stab21, Stab22 and Stab23. These phages have double-stranded DNA genomes ranging between 153,338 and 155,962 bp in size with terminal repeats of 10,814–12,304 bp. The genome analysis suggests that they represent new phage species within the genus Kayvirus in the subfamily Twortvirinae of the fa ...
- DOI:
- 10.1007/s00705-019-04267-0
-
http://dx.doi.org/10.1007/s00705-019-04267-0
- Author:
- Welch, Catharine N.; Shittu, Ismaila; Abolnik, Celia; Solomon, Ponman; Dimitrov, Kiril M.; Taylor, Tonya L.; Williams-Coplin, Dawn; Goraichuk, Iryna V.; Meseko, Clement A.; Ibu, John O.; Gado, Dorcas A.; Joannis, Tony M.; Afonso, Claudio L.
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2031-2047
- ISSN:
- 0304-8608
- Subject:
- Avian orthoavulavirus 1; Newcastle disease; epidemiology; genetic variation; genomics; host range; indigenous species; monitoring; nucleotide sequences; phylogeny; poultry; poultry health; subgenotype; vaccines; virulent strains; viruses; wild birds; Nigeria
- Abstract:
- ... Newcastle disease virus (NDV) has a wide avian host range and a high degree of genetic variability, and virulent strains cause Newcastle disease (ND), a worldwide concern for poultry health. Although NDV has been studied in Nigeria, genetic information about the viruses involved in the endemicity of the disease and the transmission that likely occurs at the poultry-wildlife interface is still larg ...
- Handle:
- 10113/6480143
- DOI:
- 10.1007/s00705-019-04288-9
- CHORUS:
- 10.1007/s00705-019-04288-9
-
https://dx.doi.org/10.1007/s00705-019-04288-9
- Author:
- Oakey, J.; Smith, C.; Underwood, D.; Afsharnasab, M.; Alday-Sanz, V.; Dhar, A.; Sivakumar, S.; Sahul Hameed, A. S.; Beattie, K.; Crook, A.
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2061-2082
- ISSN:
- 0304-8608
- Subject:
- White spot syndrome virus; genome; genotype; genotyping; geographical distribution; microsatellite repeats; shrimp culture; strain differences; Queensland
- Abstract:
- ... White spot disease, caused by infection with white spot syndrome virus (WSSV), is a serious panzootic affecting prawn aquaculture. The disease has spread rapidly around the prawn-culturing regions of the world through a number of previously identified mechanisms. The ability to distinguish and trace strains of WSSV is of great benefit to identify, and then limit, the translocation routes of the di ...
- DOI:
- 10.1007/s00705-019-04265-2
-
http://dx.doi.org/10.1007/s00705-019-04265-2
- Author:
- Scussel, Sarah; Candresse, Thierry; Marais, Armelle; Claverie, Sohini; Hoareau, Murielle; Azali, Hamza A.; Verdin, Eric; Tepfer, Mark; Filloux, Denis; Fernandez, Emmanuel; Roumagnac, Philippe; Robène, Isabelle; Lefeuvre, Pierre; Jourda, Cyril; Roux-Cuvelier, Michel; Lett, Jean-Michel
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2193-2196
- ISSN:
- 0304-8608
- Subject:
- Cassava brown streak virus; Ugandan cassava brown streak virus; double-stranded RNA; genome; high-throughput nucleotide sequencing; open reading frames; phylogeny; small interfering RNA; viruses; Comoros
- Abstract:
- ... Using high-throughput sequencing of small interfering RNAs (siRNAs), virion-associated nucleic acid (VANA), and double stranded RNAs (dsRNAs), we have determined the complete genome sequences of Comorian isolates of two ipomoviruses, cassava brown streak virus (CBSV) and a divergent isolate of Ugandan cassava brown streak virus (UCBSV-KM) representing a new strain of this virus. While the large OR ...
- DOI:
- 10.1007/s00705-019-04228-7
-
http://dx.doi.org/10.1007/s00705-019-04228-7
- Author:
- Vidovszky, Márton Z.; Szeredi, Levente; Doszpoly, Andor; Harrach, Balázs; Hornyák, Ákos
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2205-2207
- ISSN:
- 0304-8608
- Subject:
- Mastadenovirus; genes; high-throughput nucleotide sequencing; immunohistochemistry; lungs; males; nucleotide sequences; polymerase chain reaction; proteins; suckling; superinfection; viral pneumonia; viruses
- Abstract:
- ... Pathological examination of a suckling male lamb showed severe viral pneumonia with suspected bacterial superinfection. Adenovirus was detected by immunohistochemical examination of the affected lung samples. Detection of the suspected adenovirus by PCR and subsequent isolation of the virus were successful. Using next-generation sequencing, the full genome of this ovine adenovirus was sequenced an ...
- DOI:
- 10.1007/s00705-019-04299-6
-
http://dx.doi.org/10.1007/s00705-019-04299-6
- Author:
- Liu, Yuxiu; Liu, Caihong; Liu, Wujie; Wu, Hongchao; Ding, Hangtian; Cao, Yujiao; Spibey, Norman; Wang, Linxiao; He, Wenxi; Hao, Liying; Li, Xiangdong; Tian, Kegong
- Source:
- Archives of virology 2019 v.164 no.8 pp. 2153-2158
- ISSN:
- 0304-8608
- Subject:
- Canine morbillivirus; amino acids; antibody specificity; dogs; genes; genotype; glycosylation; hemagglutinins; monoclonal antibodies; nucleotide sequences; phylogeny; sequence analysis; vaccines; viruses; China
- Abstract:
- ... Eighteen canine distemper virus (CDV) isolates were obtained from clinical samples in Henan province, China, between 2012 and 2016. These viruses could not be recognized by 1A4, a monoclonal antibody specific for the H protein of CDV vaccine strains. The complete haemagglutinin (H) genes of all 18 isolates were sequenced, and phylogenetic analysis showed that they segregated into two clusters with ...
- DOI:
- 10.1007/s00705-019-04298-7
-
http://dx.doi.org/10.1007/s00705-019-04298-7