Journal: FEMS microbiology letters / Subject: Escherichia coli and DNA microarrays / Text Availability: Citation in PubAg

Author:: Jenkins, Claire; Ijperen, Carola; Dudley, Edward G.; Chart, Henrik; Willshaw, Geraldine A.; Cheasty, Tom; Smith, Henry R.; Nataro, James P.
Source:: FEMS microbiology letters 2005 v.253 no.1 pp. 119-124
ISSN:: 0378-1097
Subject:: alleles; diarrhea; loci; monitoring; phenotype; DNA microarrays; plasmids; nucleotide sequences; virulence; databases; Escherichia coli; United Kingdom
Abstract:: ... A DNA microarray was used to analyze the distribution of plasmid and chromosomal genes among strains of enteroaggregative Escherichia coli (EAEC) isolated from a prospective diarrhoea surveillance study in the United Kingdom. Target genes were extracted from existing databases and from the genome sequence of prototype EAEC strain 042. We found that strains exhibiting the aggregative adherence (AA) ...
DOI:: 10.1016/j.femsle.2005.09.040
: http://dx.doi.org/10.1016/j.femsle.2005.09.040

Author:: Chatterji, Dipankar; Ogawa, Yoshito; Shimada, Tomohiro; Ishihama, Akira
Source:: FEMS microbiology letters 2007 v.267 no.1 pp. 51-55
ISSN:: 0378-1097
Subject:: messenger RNA; starvation; stress response; DNA microarrays; gene expression; ribosomal proteins; operon; DNA-directed RNA polymerase; Escherichia coli
Abstract:: ... The rpoZ gene for the omega subunit of Escherichia coli RNA polymerase constitutes single operon with the spoT gene, which is responsible for the maintenance of stringent response under nutrient starvation conditions. To identify the physiological role of the omega subunit, we compared the gene expression profile of wild-type Escherichia coli with that of an rpoZ deleted strain by microarray analy ...
DOI:: 10.1111/j.1574-6968.2006.00532.x
: http://dx.doi.org/10.1111/j.1574-6968.2006.00532.x

Author:: Yang, Lei; Zhou, Dongsheng; Liu, Xiumei; Han, Haihong; Zhan, Lingjun; Guo, Zhaobiao; Zhang, Lianfeng; Qin, Chuan; Wong, Hin-chung; Yang, Ruifu
Source:: FEMS microbiology letters 2009 v.291 no.1 pp. 50-58
ISSN:: 0378-1097
Subject:: 5' untranslated regions; DNA microarrays; Escherichia coli; Vibrio parahaemolyticus; bacteria; cluster analysis; cold shock proteins; cold stress; cold treatment; gene expression; gene expression regulation; multigene family; promoter regions; temperature
Abstract:: ... A whole-genome DNA microarray was constructed to dissect expression profiles of Vibrio parahaemolyticus in response to a sudden temperature downshift from 37 to 10 °C. The mRNA level of each gene at each of three time points (20, 40 and 60 min after temperature downshift) was compared with that just before cold treatment. Clustering analysis of time-course data revealed nine gene clusters with dif ...
DOI:: 10.1111/j.1574-6968.2008.01434.x
PubMed:: 19054071
: http://dx.doi.org/10.1111/j.1574-6968.2008.01434.x

Author:: Hwang, Dahyun; Lim, Young-Hee
Source:: FEMS microbiology letters 2019 v.366 no.4
ISSN:: 1574-6968
Subject:: DNA microarrays; Escherichia coli; antibacterial properties; drugs; genes; grapes; growth retardation; iron absorption; mutants; phytoalexins; resveratrol; transporters
Abstract:: ... Resveratrol (RSV), a phytoalexin found in grapes and other plants, is known to have antibacterial effects against Escherichia coli. In this study, we aimed to identify the target gene(s) for the antibacterial activity of RSV in E. coli. Using a DNA microarray, we found that exposure to RSV led to changes in the expression levels of iron metabolism genes, and those involved in drug response and res ...
DOI:: 10.1093/femsle/fnz030
: http://dx.doi.org/10.1093/femsle/fnz030

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