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You searched for: Journal Genes & genomics Remove constraint Journal: Genes & genomics Publication Year 2018 Remove constraint Publication Year: 2018 Source 2018 v.40 no.7 Remove constraint Source: 2018 v.40 no.7
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1. Analysis of synonymous codon usage bias in helicase gene from Autographa californica multiple nucleopolyhedrovirus

Author:
Wang, Hongju; Meng, Tao; Wei, Wenqiang
Source:
Genes & genomics 2018 v.40 no.7 pp. 767-780
ISSN:
1976-9571
Subject:
Autographa californica multiple nucleopolyhedrovirus; DNA helicases; DNA replication; Escherichia coli; amino acid composition; amino acids; cluster analysis; codons; evolution; host range; humans; mice; mutation; yeasts
Abstract:
... The helicase gene of Autographa californica multiple nucleopolyhedrovirus (AcMNPV) is not only involved in viral DNA replication, but also plays a role in viral host range. To identify the codon usage bias of helicase of AcMNPV, the codon usage bias of helicase was especially studies in AcMNPV and 41 reference strains of baculoviruses by calculating the codon adaptation index (CAI), effective numb ...
DOI:
10.1007/s13258-018-0689-x

2. Characterization of GA20ox genes in tall and dwarf types coconut (Cocos nucifera L.)

Author:
Boonkaew, Tippawan; Mongkolsiriwatana, Chareerat; Vongvanrungruang, Ananya; Srikulnath, Kornsorn; Peyachoknagul, Surin
Source:
Genes & genomics 2018 v.40 no.7 pp. 735-745
ISSN:
1976-9571
Subject:
Cocos nucifera; Elaeis guineensis; Magnoliopsida; active sites; amino acid sequences; arginine; aspartic acid; binding sites; biosynthesis; coconuts; enzymes; exons; gibberellins; histidine; introns; iron; leaves; molecular cloning; mutation; phenotype; promoter regions; proteins; serine; vascular plants
Abstract:
... Coconuts (Cocos nucifera L.) are divided by the height into tall and dwarf types. In many plants the short phenotype was emerged by mutation of the GA20ox gene encoding the enzyme involved in gibberellin (GA) biosynthesis. Two CnGA20ox genes, CnGA20ox1 and CnGA20ox2, were cloned from tall and dwarf types coconut. The sequences, gene structures and expressions were compared. The structure of each g ...
DOI:
10.1007/s13258-018-0682-4

3. Correction to: Development of 21 polymorphic microsatellite markers for the black-banded sea krait, Laticauda semifasciata (Elapidae: Laticaudinae), and cross-species amplification for two other congeneric species

Author:
Hyun, Young Se; Kim, Il-Hun; Song, Ha Yeun; Park, Daesik; Toda, Mamoru; Tsai, Tein-Shun; An, Hye Suck
Source:
Genes & genomics 2018 v.40 no.7 pp. 799
ISSN:
1976-9571
Subject:
Laticauda; genetic markers; microsatellite repeats; polymerase chain reaction
Abstract:
... Unfortunately, one of the co-author’s family name has been incorrectly published in the original online publication. The correct family name should be Tsai. ...
DOI:
10.1007/s13258-018-0671-7

4. Correction to: Targeted next-generation sequencing for identifying genes related to horse temperament

Author:
Song, Soyoung; Oh, Dong‑Yep; Cho, Gil‑Jae; Kim, Dong Hee; Park, Yong‑Soo; Han, Kyudong
Source:
Genes & genomics 2018 v.40 no.7 pp. 797
ISSN:
1976-9571
Subject:
genes; high-throughput nucleotide sequencing; horses; temperament
Abstract:
... There is a minor spelling error in one of corresponding authors’ name in this article. Young-Soo Park should be Yong-Soo Park. Also, in Conflict of interest, “Young-Soo Park declares that he has no conflict of interest.” should be “Yong-Soo Park declares that he has no conflict of interest.” The author’s name is now updated in the author group, affiliation section and in conflict of interest in th ...
DOI:
10.1007/s13258-017-0627-3

5. Detection of favorable alleles for yield and yield components by association mapping in upland cotton

Author:
Dong, Chengguang; Wang, Juan; Chen, Quanjia; Yu, Yu; Li, Baocheng
Source:
Genes & genomics 2018 v.40 no.7 pp. 725-734
ISSN:
1976-9571
Subject:
Gossypium hirsutum; alleles; chromosome mapping; genetic markers; genetic variation; linear models; linkage disequilibrium; loci; marker-assisted selection; microsatellite repeats; phenotype; phenotypic variation; population structure; prediction; quantitative trait loci; yield components; China
Abstract:
... Association mapping based on linkage disequilibrium provides a promising tool for dissecting the genetic basis underlying complex traits. To reveal the genetic variations of yield and yield components traits in upland cotton, 403 upland cotton accessions were collected and analyzed by 560 genome-wide simple sequence repeats (SSRs). A diverse panel consisting of 403 upland cotton accessions was gro ...
DOI:
10.1007/s13258-018-0678-0

6. Differential expression of primary pair-rule genes during bidirectional regeneration in Perionyx excavatus

Author:
Yu, Yun-Sang; Kim, Jin-Se; Jiménez, Brenda Irene Medina; Kim, Tae-Wuk; Cho, Sung-Jin
Source:
Genes & genomics 2018 v.40 no.7 pp. 747-753
ISSN:
1976-9571
Subject:
Perionyx excavatus; arthropods; earthworms; gene expression regulation; genes; head; reverse transcriptase polymerase chain reaction; tail; transcription (genetics)
Abstract:
... The earthworm Perionyx excavatus is a species highly capable of bidirectional regeneration. Pair-rule genes are thought to have an ancestral function in arthropod segmentation. However, orthologs in annelids (i.e. Capitella teleta) do not exhibit segmental expression in the ectoderm or mesoderm. Their role in regeneration is currently unclear. Here, we report the expression profile of primary pair ...
DOI:
10.1007/s13258-018-0683-3

7. Genetic structure of six cattle populations revealed by transcriptome-wide SNPs and gene expression

Author:
Wang, Wei; Wang, Huai; Tang, Hui; Gan, Jia; Shi, Changgeng; Lu, Qing; Fang, Donghui; Yi, Jun; Fu, Maozhong
Source:
Genes & genomics 2018 v.40 no.7 pp. 715-724
ISSN:
1976-9571
Subject:
cattle; cattle breeds; chromosomes; gene expression; genes; genomics; marker-assisted selection; population structure; sequence analysis; single nucleotide polymorphism; transcriptomics; China
Abstract:
... There are abundant cattle breeds/populations in China, and the systematic discovery of genomic variants is essential for performing the marker assisted selection and conservation of genetic resources. In the present study, we employed whole transcriptome sequencing (RNA-Seq) technology for revealing genetic structure among six Chinese cattle populations according to transcriptome-wide SNPs and gen ...
DOI:
10.1007/s13258-018-0677-1
PubMed:
29934811
PubMed Central:
PMC6015124

8. Identification of transposable elements fused in the exonic region of the olive flounder genome

Author:
Nam, Gyu-Hwi; Gim, Jeong-An; Mishra, Anshuman; Ahn, Kung; Kim, Suhkmann; Kim, Do-Hyung; Cha, Hee-Jae; Choi, Yung Hyun; Park, Chan-Il; Kim, Heui-Soo
Source:
Genes & genomics 2018 v.40 no.7 pp. 707-713
ISSN:
1976-9571
Subject:
DNA; Paralichthys olivaceus; exons; flounder; gene ontology; genomics; immunology; mortality; terminal repeat sequences; transcriptomics; transposons; East Asia
Abstract:
... Transposable elements (TEs) are mobile genetic sequences that comprise a large portion of vertebrate genomes. The olive flounder (Paralichthys olivaceus) is a valuable marine resource in East Asia. The scope of most genomic studies on the olive flounder is limited to its immunology as their focus is the prevention of mass mortality of this species. Thus, for a broader understanding of the species, ...
DOI:
10.1007/s13258-018-0676-2

9. LncRNA Gm2044 highly expresses in spermatocyte and inhibits Utf1 translation by interacting with Utf1 mRNA

Author:
Hu, Ke; Li, Leina; Liao, Yaping; Liang, Meng
Source:
Genes & genomics 2018 v.40 no.7 pp. 781-787
ISSN:
1976-9571
Subject:
Western blotting; bioinformatics; cell lines; cell proliferation; genes; male fertility; males; mechanism of action; messenger RNA; mice; microarray technology; non-coding RNA; quantitative polymerase chain reaction; reverse transcriptase polymerase chain reaction; spermatocytes; spermatogenesis; spermatogonia; spermatozoa; stem cells
Abstract:
... Spermatogenesis is a process which includes the following phases: spermatogonial stem cell proliferation and differentiation, spermatogonia, spermatocyte, spermatid and mature sperm. Spermatogenic failure is the important factor resulting in male infertility. Recent studies showed that long noncoding RNA (lncRNA) have been found to be involved in the regulation of male reproduction. However, lncRN ...
DOI:
10.1007/s13258-018-0690-4

10. Multivariate genome-wide association studies on tenderness of Berkshire and Duroc pig breeds

Author:
Jang, Dongsung; Yoon, Joon; Taye, Mengistie; Lee, Wonseok; Kwon, Taehyung; Shim, Seunghyun; Kim, Heebal
Source:
Genes & genomics 2018 v.40 no.7 pp. 701-705
ISSN:
1976-9571
Subject:
Duroc; breeding programs; genes; genetic variation; genome-wide association study; genomics; intramuscular fat; meat tenderness; pork; pork quality; single nucleotide polymorphism; statistical models; swine
Abstract:
... Genome-wide association studies (GWAS) have been steadily used for identification of genomic links to disease and various economical traits. Of those traits, a tenderness of pork is one of the most important factors in quality evaluation of consumers. In this study, we use two pig breed populations; Berkshire is known for its excellent meat quality and Duroc which is known for its high intramuscul ...
DOI:
10.1007/s13258-018-0672-6

11. Transcriptome analysis for identifying possible gene regulations during maize root emergence and formation at the initial growth stage

Author:
Hwang, Sun-Goo; Kim, Kyung-Hee; Lee, Byung-Moo; Moon, Jun-Cheol
Source:
Genes & genomics 2018 v.40 no.7 pp. 755-766
ISSN:
1976-9571
Subject:
Zea mays; absorption; algorithms; biochemical pathways; carbohydrates; computer software; corn; developmental stages; gene expression; gene expression regulation; messenger RNA; multigene family; oxygen; plant development; planting; quality control; regulatory sequences; root tips; sequence analysis; shoots; statistical analysis; transcription factors; transcriptomics
Abstract:
... The root plays an important role during plant development and growth, i.e., the plant body maintenance, nutrient storage, absorption of water, oxygen and nutrient from the soil, and storage of water and carbohydrates, etc. The objective of this study was attempted to determine root-specific genes at the initial developmental stages of maize by using network-based transcriptome analysis. The raw da ...
DOI:
10.1007/s13258-018-0687-z

12. Transcriptome analysis of differentially expressed genes in rabbits’ ovaries by digital gene-expression profiling

Author:
Huang, Tao; Wang, Ya-dong; Xue, Ming-ming; Feng, Xue; Sun, Cai-Xia; Wang, An-si; Xie, Shu-yu; Zhang, Meng; Sun, Gui-Rong; Li, Ming
Source:
Genes & genomics 2018 v.40 no.7 pp. 687-700
ISSN:
1976-9571
Subject:
DNA replication; Oryctolagus cuniculus; animal ovaries; biosynthesis; cell cycle; developmental stages; fructose; gene expression; gene expression regulation; genes; livestock; mannose; oocytes; pyruvic acid; rabbits; reproduction; steroid hormones; transcriptomics
Abstract:
... Reproduction is a complex physiological process that is regulated by multiple genes and pathways. Compared with studies of common livestock, fewer studies of genes related to the fertility of rabbits (Oryctolagus cuniculus) have been reported, and the molecular mechanism of their high productivity is still poorly understood. To identify candidate genes associated with development and prolificacy i ...
DOI:
10.1007/s13258-018-0651-y

13. Whole-exome sequencing analysis reveals co-segregation of a COL20A1 missense mutation in a Pakistani family with striate palmoplantar keratoderma

Author:
Khan, Muhammad Ismail; Choi, Soyeon; Zahid, Muhammad; Ahmad, Habib; Ali, Roshan; Jelani, Musharraf; Kang, Changsoo
Source:
Genes & genomics 2018 v.40 no.7 pp. 789-795
ISSN:
1976-9571
Subject:
bioinformatics; collagen; databases; fibronectins; genes; heterozygosity; keratin; missense mutation; pathogenicity; phenotype; prediction; sequence analysis; skin diseases
Abstract:
... Palmoplantar keratoderma (PPK) is a rare group of excessive skin disorder characterized by thickness over the palms and soles. The striate palmoplantar keratoderma (PPKS) is a form in which hyperkeratotic lesions are restricted to the pressure regions extending longitudinally in the length of each finger to the palm. Dominantly inherited mutations in genes including desmoglein 1, desmoplakin and k ...
DOI:
10.1007/s13258-018-0695-z