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You searched for: Journal Genome announcements Remove constraint Journal: Genome announcements Publication Year 2013 Remove constraint Publication Year: 2013 Source 2013 v.1 no.5 Remove constraint Source: 2013 v.1 no.5
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1. A Divergent Variant of the Eleventh Human Polyomavirus Species, Saint Louis Polyomavirus

Author:
Pastrana, Diana V.; FitzGerald, Peter C.; Phan, Giao Q.; Raiji, Manish T.; Murphy, Philip M.; McDermott, David H.; Velez, Daniel; Bliskovsky, Valery; McBride, Alison A.; Buck, Christopher B.
Source:
Genome announcements 2013 v.1 no.5 pp. e00812-13
ISSN:
2169-8287
Subject:
feces; high-throughput nucleotide sequencing; Polyomaviridae; humans
Abstract:
... Saint Louis polyomavirus (STLPyV) was recently discovered in human feces. Using random-primed rolling circle amplification combined with deep sequencing, we have found a divergent variant of STLPyV in a sanitized human skin wart specimen. The result strongly suggests that STLPyV directly infects humans and is not simply a dietary contaminant. ...
DOI:
10.1128/genomeA.00812-13
PubMed:
24158550
PubMed Central:
PMC3813180

2. Chromosome Sequence of Borrelia miyamotoi, an Uncultivable Tick-Borne Agent of Human Infection

Author:
Hue, Fong; Ghalyanchi Langeroudi, Arash; Barbour, Alan G.
Source:
Genome announcements 2013 v.1 no.5 pp. e00713-13
ISSN:
2169-8287
Subject:
Borrelia miyamotoi; Ixodes scapularis; blood; chromosomes; fever; high-throughput nucleotide sequencing; human diseases; mice; ticks
Abstract:
... Borrelia miyamotoi is a newly recognized agent of human disease. B. miyamotoi strain LB-2001, an isolate from the tick Ixodes scapularis, was propagated in mice. The sequence of the chromosome was determined by next-generation sequencing of DNA isolated from whole blood. The sequence established that B. miyamotoi is a relapsing fever group species. ...
DOI:
10.1128/genomeA.00713-13
PubMed:
24029760
PubMed Central:
PMC3772144

3. Complete Genome Sequence of a Channel Catfish Epidemic Isolate, Aeromonas hydrophila Strain ML09-119

Author:
Tekedar, Hasan C.; Waldbieser, Geoffrey C.; Karsi, Attila; Liles, Mark R.; Griffin, Matt J.; Vamenta, Stefanie; Sonstegard, Tad; Hossain, Mohammad; Schroeder, Steven G.; Khoo, Lester; Lawrence, Mark L.
Source:
Genome announcements 2013 v.1 no.5 pp. e00755-13
ISSN:
2169-8287
Subject:
Aeromonas hydrophila; Ictalurus punctatus; bacteria; humans; nucleotide sequences; septicemia
Abstract:
... Aeromonas hydrophila is a Gram-negative, rod-shaped, mesophilic bacterium that infects both aquatic poikilothermic animals and mammals, including humans. Here, we present the complete genome sequence of Aeromonas hydrophila strain ML09-119, which represents a clonal group of A. hydrophila isolates causing outbreaks of bacterial septicemia in channel catfish since 2009. ...
DOI:
10.1128/genomeA.00755-13
PubMed:
24051325
PubMed Central:
PMC3778208

4. Complete Genome Sequence of a Cytomegalovirus Towne-BAC (Bacterial Artificial Chromosome) Isolate Maintained in Escherichia coli for 10 Years and Then Serially Passaged in Human Fibroblasts

Author:
Brechtel, Teal; Tyner, Molly; Tandon, Ritesh
Source:
Genome announcements 2013 v.1 no.5 pp. e00693-13
ISSN:
2169-8287
Subject:
Cytomegalovirus; Escherichia coli; bacteria; bacterial artificial chromosomes; fibroblasts; humans; nucleotide sequences
Abstract:
... Here, we present the complete genome sequence of a cytomegalovirus, the Towne-BAC (bacterial artificial chromosome) isolate, which was maintained in bacterial cells for 10 years and then serially passaged in human fibroblasts for 10 passages. A total of 132 nucleotide differences were discovered in the Towne sequence compared to the reference sequence (GenBank accession no. AC146851). ...
DOI:
10.1128/genomeA.00693-13
PubMed:
24072857
PubMed Central:
PMC3784777

5. Complete Genome Sequence of an Attenuated Duck Enteritis Virus Obtained by In Vitro Serial Passage

Author:
Yang, Chenghuai; Li, Junping; Li, Qihong; Li, Huijiao; Xia, Yecai; Guo, Xin; Yu, Kangzhen; Yang, Hanchun
Source:
Genome announcements 2013 v.1 no.5 pp. e00685-13
ISSN:
2169-8287
Subject:
chickens; open reading frames; pathogenesis; virulence; Anatid alphaherpesvirus 1
Abstract:
... Here, we present the complete genome sequence of an attenuated duck enteritis virus (DEV) obtained by serial chicken embryo passage. Compared with a virulent DEV, there is a serial deletion in unique long open reading frame 11 (LORF11) and unique long region 2 (UL2). This study will aid in further exploration of the molecular pathogenesis of DEV. ...
DOI:
10.1128/genomeA.00685-13
PubMed:
24009119
PubMed Central:
PMC3764414

6. Complete Genome Sequence of an Avian Bornavirus Isolated from a Healthy Canadian Goose (Branta canadensis)

Author:
Guo, Jianhua; Baroch, John; Randall, Adam; Tizard, Ian
Source:
Genome announcements 2013 v.1 no.5 pp. e00839-13
ISSN:
2169-8287
Subject:
Bornavirus; Branta canadensis; geese; genotype; nucleotide sequences; surveys; swans; wild birds; North America
Abstract:
... A recent survey among wild birds demonstrated the presence of a unique genotype of avian bornavirus (ABV) in wild geese and swans in North America. Here, we report the first complete genome sequence of an avian bornavirus of the goose genotype. ...
DOI:
10.1128/genomeA.00839-13
PubMed:
24158553
PubMed Central:
PMC3813183

7. Complete Genome Sequence of a Nephropathogenic Infectious Bronchitis Virus Strain Isolated in China

Author:
Yang, Jing-tian; Ma, Bing-cun
Source:
Genome announcements 2013 v.1 no.5 pp. e00815-13
ISSN:
2169-8287
Subject:
Infectious bronchitis virus; financial economics; nucleotide sequences; poultry industry; sequence analysis; China
Abstract:
... Infectious bronchitis virus (IBV) causes tremendous economic losses to the poultry industry. Here, we report the complete genome analysis results for a new natural recombination nephropathogenic IBV strain named SAIBK, which was isolated in the Sichuan province of China in 2005. ...
DOI:
10.1128/genomeA.00815-13
PubMed:
24115543
PubMed Central:
PMC3795213

8. Complete Genome Sequence of a New Tobamovirus Naturally Infecting Tomatoes in Mexico

Author:
Li, Rugang; Gao, Shan; Fei, Zhangjun; Ling, Kai-Shu
Source:
Genome announcements 2013 v.1 no.5 pp. e00794-13
ISSN:
2169-8287
Subject:
RNA; Tobamovirus; high-throughput nucleotide sequencing; new species; nucleotide sequences; phylogeny; tomatoes; viruses; Mexico
Abstract:
... The complete genomic sequence of a new tobamovirus in tomatoes was determined through deep sequencing and assembly of small RNAs, then validated through Sanger sequencing. Based on the low sequence identity (≤85%) to known viruses and a close phylogenetic relationship to tobamoviruses, it was identified as a new species. ...
DOI:
10.1128/genomeA.00794-13
PubMed:
24092788
PubMed Central:
PMC3790092

9. Complete Genome Sequence of an H12N8 Avian Influenza Virus Isolated from Wild Bird Feces in Hunan East Dongting Lake National Nature Reserve

Author:
Zhang, Hong; Li, Zi; Yang, Hao; Liu, Yunzhi; Li, Fangcai; Wang, Lijie; Li, Xiaodan; Zhu, Yun; Cai, Yahui; Bai, Zhiyong; Yi, Feiyue; Shu, Yuelong
Source:
Genome announcements 2013 v.1 no.5 pp. e00891-13
ISSN:
2169-8287
Subject:
Influenza A virus; conservation areas; feces; gene pool; genes; lakes; nucleotide sequences; phylogeny; wild birds; China
Abstract:
... An H12N8 subtype avian influenza virus (AIV) was isolated from a wild bird in China in 2011. It is the first report of isolation of the H12N8 subtype AIV in Asia. Phylogenetic analysis results suggested it is a reassortant, and all eight gene segments belong to the Eurasian gene pool. ...
DOI:
10.1128/genomeA.00891-13
PubMed:
24158557
PubMed Central:
PMC3813187

10. Complete Genome Sequence of a Novel Feline Astrovirus from a Domestic Cat in Hong Kong

Author:
Lau, Susanna K. P.; Woo, Patrick C. Y.; Yip, Cyril C. Y.; Bai, Ru; Wu, Ying; Tse, Herman; Yuen, Kwok-yung
Source:
Genome announcements 2013 v.1 no.5 pp. e00708-13
ISSN:
2169-8287
Subject:
sequence analysis; Mamastrovirus 2; humans; open reading frames; cats; genome; nucleotides; genotype; China
Abstract:
... We report the first complete genome sequence of a feline astrovirus (FAstV), FAstV2 strain 1637F, identified from a domestic cat. The genome is 6,779 nucleotides (nt) in length and consists of three overlapping open reading frames (ORF1a-ORF1b-ORF2). Sequence analysis suggests that FAstV2 represents a new FAstV genotype that is closely related to human astroviruses. ...
DOI:
10.1128/genomeA.00708-13
PubMed:
24072858
PubMed Central:
PMC3784778

11. Complete Genome Sequence of Antarctic Bacterium Psychrobacter sp. Strain G

Author:
Che, Shuai; Song, Lai; Song, Weizhi; Yang, Meng; Liu, Guiming; Lin, Xuezheng
Source:
Genome announcements 2013 v.1 no.5 pp. e00725-13
ISSN:
2169-8287
Subject:
Psychrobacter; bacteria; cold; enzymes; evolution; genomics; nucleotide sequences; physiology; temperature; Antarctic region; Antarctica
Abstract:
... Here, we report the complete genome sequence of Psychrobacter sp. strain G, isolated from King George Island, Antarctica, which can produce lipolytic enzymes at low temperatures. The genomics information of this strain will facilitate the study of the physiology, cold adaptation properties, and evolution of this genus. ...
DOI:
10.1128/genomeA.00725-13
PubMed:
24051316
PubMed Central:
PMC3778199

12. Complete Genome Sequence of a UL96 Mutant Cytomegalovirus Towne-BAC (Bacterial Artificial Chromosome) Isolate Passaged in Fibroblasts To Allow Accumulation of Compensatory Mutations

Author:
Brechtel, Teal M.; Tyner, Molly; Tandon, Ritesh
Source:
Genome announcements 2013 v.1 no.5 pp. e00901-13
ISSN:
2169-8287
Subject:
Cytomegalovirus; bacterial artificial chromosomes; fibroblasts; genes; genetic engineering; humans; mutants; mutation; nucleotide sequences
Abstract:
... Here, we present the complete genome sequence of a cytomegalovirus Towne-BAC (bacterial artificial chromosome) isolate that we first genetically engineered to mutate the UL96 gene and then serially passaged in human fibroblasts to allow for the accumulation of compensatory mutations. A total of 17 single-base substitutions were discovered in the passaged genome compared to the reference sequence ( ...
DOI:
10.1128/genomeA.00901-13
PubMed:
24158558
PubMed Central:
PMC3813188

13. Complete Genome Sequence of Bacillus subtilis Phage φ105

Author:
Zeigler, Daniel R.
Source:
Genome announcements 2013 v.1 no.5 pp. e00641-13
ISSN:
2169-8287
Subject:
Bacillus subtilis; bacteriophages; loci; nucleotide sequences; regulon
Abstract:
... A complete 39,318-bp genome sequence containing 52 coding sequences has been determined for the Bacillus subtilis temperate phage φ105. In a lysogen, B. subtilis strain 1L32, the φ105 prophage interrupts the radC locus, a part of the competence-induced ComK regulon. ...
DOI:
10.1128/genomeA.00641-13
PubMed:
24009114
PubMed Central:
PMC3764409

14. Complete Genome Sequence of Encapsulated Haemophilus influenzae Type f KR494, an Invasive Isolate That Caused Necrotizing Myositis

Author:
Su, Yu-Ching; Hörhold, Franziska; Singh, Birendra; Riesbeck, Kristian
Source:
Genome announcements 2013 v.1 no.5 pp. e00470-13
ISSN:
2169-8287
Subject:
Haemophilus influenzae; encapsulation; etiology; myositis; nucleotide sequences; pathogenesis; patients; sepsis (infection); serotypes
Abstract:
... Haemophilus influenzae serotype f (Hif) is an etiologic agent of bacterial invasive disease. Here, we report the first annotated genome sequence of the Hif strain KR494, which was isolated from a patient suffering from sepsis and necrotizing myositis. The genome sequence will increase the understanding of Hif pathogenesis. ...
DOI:
10.1128/genomeA.00470-13
PubMed:
24092777
PubMed Central:
PMC3790081

15. Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules

Author:
Hirsch, Ann M.; Alvarado, Johana; Bruce, David; Chertkov, Olga; De Hoff, Peter L.; Detter, John C.; Fujishige, Nancy A.; Goodwin, Lynne A.; Han, James; Han, Shunsheng; Ivanova, Natalia; Land, Miriam L.; Lum, Michelle R.; Milani-Nejad, Nima; Nolan, Matt; Pati, Amrita; Pitluck, Sam; Tran, Stephen S.; Woyke, Tanja; Valdés, Maria
Source:
Genome announcements 2013 v.1 no.5 pp. e00759-13
ISSN:
2169-8287
Subject:
Casuarina equisetifolia; Micromonospora; actinorhizae; antibiotics; biological control; genome; nucleotide sequences; polysaccharides; root nodules; Mexico
Abstract:
... Micromonospora species live in diverse environments and exhibit a broad range of functions, including antibiotic production, biocontrol, and degradation of complex polysaccharides. To learn more about these versatile actinomycetes, we sequenced the genome of strain L5, originally isolated from root nodules of an actinorhizal plant growing in Mexico. ...
DOI:
10.1128/genomeA.00759-13
PubMed:
24072863
PubMed Central:
PMC3784783

16. Complete Genome Sequence of Pseudomonas aeruginosa Podophage MPK7, Which Requires Type IV Pili for Infection

Author:
Bae, Hee-Won; Cho, You-Hee
Source:
Genome announcements 2013 v.1 no.5 pp. e00744-13
ISSN:
2169-8287
Subject:
Pseudomonas aeruginosa; bacteriophages; fimbriae; nucleotide sequences; virus receptors
Abstract:
... We report the complete genome sequence of Pseudomonas aeruginosa podophage MPK7. It displays synteny to the P. aeruginosa phages of the Phikmvlikevirus genus, which includes phiKMV and LKA1. MPK7 requires type IV pili (TFP) for infection, suggesting the role of functional TFP as the receptor for this phage genus. ...
DOI:
10.1128/genomeA.00744-13
PubMed:
24115538
PubMed Central:
PMC3795208

17. Complete Genome Sequence of Reticuloendotheliosis Virus Strain MD-2, Isolated from a Contaminated Turkey Herpesvirus Vaccine

Author:
Li, Junping; Yang, Chenghuai; Li, Qihong; Li, Huijiao; Xia, Yecai; Liu, Dan; Yu, Kangzhen; Yang, Hanchun
Source:
Genome announcements 2013 v.1 no.5 pp. e00785-13
ISSN:
2169-8287
Subject:
epidemiological studies; Meleagrid alphaherpesvirus 1; flocks; vaccines; nucleotide sequences; Reticuloendotheliosis virus; birds
Abstract:
... Here, we present the complete genomic sequence of a reticuloendotheliosis virus (REV) isolated from a contaminated turkey herpesvirus (HVT) vaccine. This report will be helpful for epidemiological studies on REV infection in avian flocks. ...
DOI:
10.1128/genomeA.00785-13
PubMed:
24092783
PubMed Central:
PMC3790087

18. Complete Genome Sequence of SfII, a Serotype-Converting Bacteriophage of the Highly Prevalent Shigella flexneri Serotype 2a

Author:
George, Divya T.; Stephenson, David P.; Tran, Elizabeth; Morona, Renato; Verma, Naresh K.
Source:
Genome announcements 2013 v.1 no.5 pp. e00626-13
ISSN:
2169-8287
Subject:
Shigella flexneri; bacteriophages; nucleotide sequences; serotypes
Abstract:
... SfII is a serotype-converting temperate bacteriophage of the highly prevalent Shigella flexneri serotype 2a. We isolated the SfII phage from a wild-type strain of S. flexneri serotype 2a. Here, we present the complete genome sequence of this phage. ...
DOI:
10.1128/genomeA.00626-13
PubMed:
24029753
PubMed Central:
PMC3772137

19. Complete Genome Sequence of Staphylococcus aureus 6850, a Highly Cytotoxic and Clinically Virulent Methicillin-Sensitive Strain with Distant Relatedness to Prototype Strains

Author:
Fraunholz, Martin; Bernhardt, Jörg; Schuldes, Jörg; Daniel, Rolf; Hecker, Michael; Sinha, Bhanu
Source:
Genome announcements 2013 v.1 no.5 pp. e00775-13
ISSN:
2169-8287
Subject:
Staphylococcus aureus; arthritis; bacteremia; bacteria; cytotoxicity; humans; nucleotide sequences; osteomyelitis; pathogens; patients; virulence
Abstract:
... Staphylococcus aureus is a frequent human commensal bacterium and pathogen. Here we report the complete genome sequence of strain 6850 (spa type t185; sequence type 50 [ST50]), a highly cytotoxic and clinically virulent methicillin-sensitive strain from a patient with complicated S. aureus bacteremia associated with osteomyelitis and septic arthritis. ...
DOI:
10.1128/genomeA.00775-13
PubMed:
24072870
PubMed Central:
PMC3784790

20. Complete Genome Sequence of Staphylococcus aureus Tager 104, a Sequence Type 49 Ancestor

Author:
Davis, Richard; Hossain, Mohammad J.; Liles, Mark R.; Panizzi, Peter
Source:
Genome announcements 2013 v.1 no.5 pp. e00706-13
ISSN:
2169-8287
Subject:
Staphylococcus aureus; abscess; multilocus sequence typing; nucleotide sequences
Abstract:
... We report here the complete genome sequence of Staphylococcus aureus Tager 104, originally isolated from a cutaneous abscess in 1947 by Morris Tager. Sequence typing of the strain revealed its membership in sequence type 49 (ST49), a previously unknown multilocus sequence type (MLST) in clinical samples. ...
DOI:
10.1128/genomeA.00706-13
PubMed:
24029757
PubMed Central:
PMC3772141