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You searched for: Journal name Genome announcements Remove constraint Journal name: Genome announcements Publication year rev 7987-2013 Remove constraint Publication year rev: 7987-2013 Source 2013 v.1 no.6 Remove constraint Source: 2013 v.1 no.6
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1. Changuinola Virus Serogroup, New Genomes within the Genus Orbivirus (Family Reoviridae) Isolated in the Brazilian Amazon Region

Author:
Sandro P. Silva; Meik Dilcher; Manfred Weidmann; Valéria L. Carvalho; Alexandre R. Casseb; Eliana V. P. Silva; Keley N. B. Nunes; Jannifer O. Chiang; Lívia C. Martins; Pedro F. C. Vasconcelos; Márcio R. T. Nunes
Source:
Genome announcements 2013 v.1 no.6 pp. e00940-13
ISSN:
2169-8287
Subject:
Changuinola virus; Oryzomys; genome; nucleotide sequences; rodents; serotypes; viruses; Amazonia; Brazil
Abstract:
... We report here the first complete genome sequence of a Changuinola virus (CGLV) serotype Irituia virus (BE AN 28873) isolated from a wild rodent (Oryzomys goeldi) in the municipality of Ipixuna, State of Pará, northern Brazil. All genome segments showed similarity with those belonging to members of the genus Orbivirus, family Reoviridae. ...
DOI:
10.1128/genomeA.00940-13
PubMed:
24285662
PubMed Central:
PMC3869324

2. Characterization of the Complete Genome Sequence of a Beak and Feather Disease Virus from a Moluccan Red Lory (Eos bornea)

Author:
Subir Sarker; Seyed A. Ghorashi; Jade K. Forwood; Stewart Metz; Shane R. Raidal
Source:
Genome announcements 2013 v.1 no.6 pp. e00844-13
ISSN:
2169-8287
Subject:
Beak and feather disease virus; genome; hosts; open reading frames; Indonesia
Abstract:
... The complete genome sequence of a beak and feather disease virus (BFDV) encoding two major open reading frames (ORFs) was characterized in a wild Moluccan red lory (Eos bornea). This is the first report of a BFDV genome from Indonesia and the first reported BFDV infection for this host species. ...
DOI:
10.1128/genomeA.00844-13
PubMed:
24285654
PubMed Central:
PMC3869316

3. Complete Genome Sequence of Bacillus subtilis Strain PY79

Author:
Jeremy W. Schroeder; Lyle A. Simmons
Source:
Genome announcements 2013 v.1 no.6 pp. e01085-13
ISSN:
2169-8287
Subject:
Bacillus subtilis; bacteria; nucleotide sequences
Abstract:
... Bacillus subtilis is a Gram-positive soil-dwelling and endospore-forming bacterium in the phylum Firmicutes. B. subtilis strain PY79 is a prototrophic laboratory strain that has been highly used for studying a wide variety of cellular pathways. Here, we announce the complete whole-genome sequence of B. subtilis PY79. ...
DOI:
10.1128/genomeA.01085-13
PubMed:
24356846
PubMed Central:
PMC3868870

4. Complete Genome Sequence of Bacillus thuringiensis Serovar Israelensis Strain HD-789

Author:
Norman A. Doggett; Chris J. Stubben; Olga Chertkov; David C. Bruce; J. Chris Detter; Shannon L. Johnson; Cliff S. Han
Source:
Genome announcements 2013 v.1 no.6 pp. e01023-13
ISSN:
2169-8287
Subject:
Bacillus thuringiensis subsp. israelensis; crystals; genes; hemagglutinins; insecticides; nucleotide sequences; pests
Abstract:
... Bacillus thuringiensis is an important microbial insecticide for controlling agricultural pests. We report the finished genome sequence of Bacillus thuringiensis serovar israelensis strain HD-789, which contains genes encoding 7 parasporal crystals consisting of Cry4Aa3, Cry4Ba5 (2 genes), Cry10Aa3, Cry11Aa3, Cry60Ba3, and Cry60Aa3, plus 3 Cyt toxin genes and 1 hemagglutinin gene. ...
DOI:
10.1128/genomeA.01023-13
PubMed:
24309743
PubMed Central:
PMC3853066

5. Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T)

Author:
Michael T. Leonard; Nedka Panayotova; William G. Farmerie; Eric W. Triplett; Wayne L. Nicholson
Source:
Genome announcements 2013 v.1 no.6 pp. e00985-13
ISSN:
2169-8287
Subject:
Carnobacterium; cold; nucleotide sequences; permafrost
Abstract:
... We report the complete genome sequence of Carnobacterium gilichinskyi strain WN1359, previously isolated from Siberian permafrost and capable of growth under cold (0°C), anoxic, CO2-dominated, low-pressure (0.7-kPa) conditions in a simulation of the Mars atmosphere. ...
DOI:
10.1128/genomeA.00985-13
PubMed:
24285647
PubMed Central:
PMC3869332

6. Complete Genome Sequence of Channel Catfish Gastrointestinal Septicemia Isolate Edwardsiella tarda C07-087

Author:
Hasan C. Tekedar; Attila Karsi; Michele L. Williams; Stefanie Vamenta; Michelle M. Banes; Mary Duke; Brian E. Scheffler; Mark L. Lawrence
Source:
Genome announcements 2013 v.1 no.6 pp. e00959-13
ISSN:
2169-8287
Subject:
Edwardsiella tarda; Ictalurus punctatus; fish farms; gastrointestinal system; humans; nucleotide sequences; septicemia
Abstract:
... Edwardsiella tarda is a Gram-negative facultative anaerobe causing disease in animals and humans. Here, we announce the complete genome sequence of the channel catfish isolate E. tarda strain C07-87, which was isolated from an outbreak of gastrointestinal septicemia on a commercial catfish farm. ...
DOI:
10.1128/genomeA.00959-13
PubMed:
24265493
PubMed Central:
PMC3837174

7. Complete Genome Sequence of Exiguobacterium sp. Strain MH3, Isolated from Rhizosphere of Lemna minor

Author:
Jie Tang; Ying Zhang; Hao Meng; Zhiquan Xue; Jiong Ma
Source:
Genome announcements 2013 v.1 no.6 pp. e01059-13
ISSN:
2169-8287
Subject:
Exiguobacterium; Lemna minor; genome assembly; nucleotide sequences; rhizosphere
Abstract:
... We report the complete genome sequence of Exiguobacterium sp. strain MH3, isolated from the rhizosphere of duckweed. The genome assembly is 3.16 Mb, with a G+C content of 47.24%, and it may provide useful information about plant-microbe interactions and the genetic basis for the tolerance of the strain to various environmental stresses. ...
DOI:
10.1128/genomeA.01059-13
PubMed:
24356831
PubMed Central:
PMC3868855

8. Complete Genome Sequence of Lactococcus lactis subsp. lactis KLDS4.0325

Author:
Xiaochun Yang; Yutang Wang; Guicheng Huo
Source:
Genome announcements 2013 v.1 no.6 pp. e00962-13
ISSN:
2169-8287
Subject:
Lactococcus lactis subsp. lactis; chromosomes; fermentation; fermented milk; genes; nucleotide sequences; plasmids; probiotics; China
Abstract:
... We report the complete genome sequence of Lactococcus lactis subsp. lactis KLDS4.0325, a probiotic bacterium isolated from homemade koumiss in Xinjiang, China. We have determined the complete genome sequence of strain KLDS4.0325, which consists of a chromosome and three plasmids and reveals genes that are likely to be involved in dairy fermentation and that have probiotic qualities. ...
DOI:
10.1128/genomeA.00962-13
PubMed:
24285665
PubMed Central:
PMC3869327

9. Complete Genome Sequence of Pediococcus pentosaceus Strain SL4

Author:
Shruti Harnal Dantoft; Eliza Maria Bielak; Jae-Gu Seo; Myung-Jun Chung; Peter Ruhdal Jensen
Source:
Genome announcements 2013 v.1 no.6 pp. e01106-13
ISSN:
2169-8287
Subject:
Pediococcus pentosaceus; chromosomes; genome; kimchi; nucleotide sequences; plasmids; vegetables
Abstract:
... Pediococcus pentosaceus SL4 was isolated from a Korean fermented vegetable product, kimchi. We report here the whole-genome sequence (WGS) of P. pentosaceus SL4. The genome consists of a 1.79-Mb circular chromosome (G+C content of 37.3%) and seven distinct plasmids ranging in size from 4 kb to 50 kb. ...
DOI:
10.1128/genomeA.01106-13
PubMed:
24371205
PubMed Central:
PMC3873615

10. Complete Genome Sequence of Porcine Encephalomyocarditis Virus Strain BD2

Author:
Wanzhe Yuan; Xiuyuan Zhang; Jiguo Sun
Source:
Genome announcements 2013 v.1 no.6 pp. e01028-13
ISSN:
2169-8287
Subject:
Encephalomyocarditis virus; myocarditis; nucleotide sequences; sows
Abstract:
... Encephalomyocarditis virus (EMCV) causes acute myocarditis in young pigs or reproductive failure in sows, and it is divided into two main groups. Here, we report the complete genome sequence of EMCV strain BD2, which belongs to group I. ...
DOI:
10.1128/genomeA.01028-13
PubMed:
24336370
PubMed Central:
PMC3861423

11. Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Thompson Strain RM6836

Author:
Craig T. Parker; Lisa Gorski; Steven Huynh
Source:
Genome announcements 2013 v.1 no.6 pp. e00900-13
ISSN:
2169-8287
Subject:
Salmonella Thompson; genome; lettuce; nucleotide sequences; serotypes
Abstract:
... Salmonella enterica subsp. enterica serovar Thompson strain RM6836 was isolated from lettuce in 2002. We report here the complete sequence and annotation of the genome of S. Thompson RM6836. This is the first reported complete genome sequence for S. Thompson and it will enhance our understanding of this serovar and provide another point for comparative studies between Salmonella enterica strains. ...
DOI:
10.1128/genomeA.00900-13
PubMed:
24233585
PubMed Central:
PMC3828309

12. Complete Genome Sequence of Staphylococcus aureus Z172, a Vancomycin-Intermediate and Daptomycin-Nonsusceptible Methicillin-Resistant Strain Isolated in Taiwan

Author:
Feng-Jui Chen; Tsai-Ling Lauderdale; Lih-Shinn Wang; I-Wen Huang
Source:
Genome announcements 2013 v.1 no.6 pp. e01011-13
ISSN:
2169-8287
Subject:
antibiotic resistance; chromosomes; methicillin; methicillin-resistant Staphylococcus aureus; nucleotide sequences; phenotype; Taiwan
Abstract:
... We report the complete genome sequence of Z172, a representative strain of sequence type 239-staphylococcal cassette chromosome mec type III (ST239-SCCmec type III) hospital-associated methicillin-resistant Staphylococcus aureus in Taiwan. Strain Z172 also exhibits a vancomycin-intermediate and daptomycin-nonsusceptible phenotype. ...
DOI:
10.1128/genomeA.01011-13
PubMed:
24309740
PubMed Central:
PMC3853063

13. Complete Genome Sequence of Universal Bacteriophage Host Strain Campylobacter jejuni subsp. jejuni PT14

Author:
Kelly J. Brathwaite; Patcharin Siringan; Joanna Moreton; Ray Wilson; Ian F. Connerton
Source:
Genome announcements 2013 v.1 no.6 pp. e00969-13
ISSN:
2169-8287
Subject:
Campylobacter jejuni subsp. jejuni; bacteriophages; nucleotide sequences; phage therapy; poultry; poultry meat; United Kingdom
Abstract:
... Campylobacter jejuni strain PT14 is a clinical isolate previously used to propagate bacteriophages in the United Kingdom phage typing scheme. The strain has proven useful in the isolation of Campylobacter bacteriophages from several sources, and it functions as a model host in phage therapy experiments with poultry and poultry meat. ...
DOI:
10.1128/genomeA.00969-13
PubMed:
24265498
PubMed Central:
PMC3837179

14. Complete Genome Sequence of a Human Enterovirus 71 Strain Isolated in Wuhan, China, in 2010

Author:
Zhu Yang; Songya Lu; Jianchun Xian; Jun Ye; Li Xiao; Jun Luo; Ke Zen; Fenyong Liu
Source:
Genome announcements 2013 v.1 no.6 pp. e01112-13
ISSN:
2169-8287
Subject:
Enterovirus A; nucleotide sequences; phylogeny; reverse transcriptase polymerase chain reaction; transcription (genetics); China
Abstract:
... The complete genome sequence of a human enterovirus 71 strain (EV71/wuhan/3018/2010), which was isolated in Wuhan in 2010, was amplified by a reverse transcription-PCR method and sequenced. Phylogenetic analysis based on the complete genome sequence classified this strain into subgenogroup A. ...
DOI:
10.1128/genomeA.01112-13
PubMed:
24371206
PubMed Central:
PMC3873616

15. Complete Genome Sequence of a Novel Iflavirus from the Transcriptome of Halyomorpha halys, the Brown Marmorated Stink Bug

Author:
Michael E. Sparks; Dawn E. Gundersen-Rindal; Robert L. Harrison
Source:
Genome announcements 2013 v.1 no.6 pp. 1-2
ISSN:
2169-8287
Subject:
Halyomorpha halys; Iflavirus; genome; nucleotides; open reading frames; transcriptome; viral proteins
Abstract:
... We report the genome sequence of a novel iflavirus recovered from the transcriptome of a colony of the brown marmorated stink bug, Halyomorpha halys. The genome is 9,263 nucleotides (nt) and contains an open reading frame (ORF) encoding a 3,017-amino-acid polyprotein. ...
Handle:
10113/58849
DOI:
10.1128/genomeA.00910-13
PubMed:
24285660
PubMed Central:
PMC3869322

16. Complete Genome Sequence of a Novel Pigeon Torque Teno Virus in China

Author:
Zhicheng Zhang; Linlin Zhuang; Wei Dai; Huihua Mao; Dingzhen Dai
Source:
Genome announcements 2013 v.1 no.6 pp. e01076-13
ISSN:
2169-8287
Subject:
Alphatorquevirus; diagnostic techniques; disease control; humans; nucleotide sequences; pigeons; single-stranded DNA; China
Abstract:
... Torque teno virus is a nonenveloped single-stranded DNA virus infecting humans and nonprimate species. We report the complete genome sequence of a pigeon torque teno virus isolated from pigeons in Jiangsu Province, China, in 2012. This genome sequence will be useful for viral diagnostics and disease control. ...
DOI:
10.1128/genomeA.01076-13
PubMed:
24356840
PubMed Central:
PMC3868864

17. Complete Genome Sequence of pAP13, a Large Linear Plasmid of a Brevibacterium Strain Isolated from a Saline Lake at 4,200 Meters above Sea Level in Argentina

Author:
Julian Rafael Dib; Jörg Schuldes; Andrea Thürmer; María E. Farias; Rolf Daniel; Friedhelm Meinhardt
Source:
Genome announcements 2013 v.1 no.6 pp. e00878-13
ISSN:
2169-8287
Subject:
Brevibacterium; feces; lakes; nucleotide sequences; plasmids; Argentina
Abstract:
... pAP13 is an 89-kb linear plasmid hosted by Brevibacterium sp. strain Ap13, an actinobacterium isolated from the feces of a flamingo from an extremely high-altitude lake in Argentina. Because of the ecological importance of the genus Brevibacterium, the absolute lack of information concerning Brevibacterium linear plasmids, and the possible ecological significance of this unusual plasmid, pAP13 was ...
DOI:
10.1128/genomeA.00878-13
PubMed:
24285657
PubMed Central:
PMC3869319

18. Complete Genome Sequence of the Last Representative Genotype of Wild Indigenous Poliovirus Type 1, Which Circulated in Brazil

Author:
Fernando N. Tavares; Eliane V. da Costa; Olen M. Kew; Edson E. da Silva
Source:
Genome announcements 2013 v.1 no.6 pp. e00811-13
ISSN:
2169-8287
Subject:
Enterovirus C; etiological agents; genotype; nucleotide sequences; paralysis; Brazil
Abstract:
... Polioviruses are the major etiological agents associated with acute flaccid paralysis (AFP). The complete genome sequence of a representative of the last wild poliovirus type 1 genotype isolated in Brazil from a paralytic poliomyelitis case is reported here. ...
DOI:
10.1128/genomeA.00811-13
PubMed:
24179117
PubMed Central:
PMC3814633

19. Complete Genome Sequence of the Mesoplasma florum W37 Strain

Author:
Vincent Baby; Dominick Matteau; Thomas F. Knight; Sébastien Rodrigue
Source:
Genome announcements 2013 v.1 no.6 pp. e00879-13
ISSN:
2169-8287
Subject:
Mesoplasma florum; RNA; genomics; models; open reading frames
Abstract:
... Mesoplasma florum is a small-genome fast-growing mollicute that is an attractive model for systems and synthetic genomics studies. We report the complete 825,824-bp genome sequence of a second representative of this species, M. florum strain W37, which contains 733 predicted open reading frames and 35 stable RNAs. ...
DOI:
10.1128/genomeA.00879-13
PubMed:
24285658
PubMed Central:
PMC3869320

20. Complete Genome Sequence of the Sesbania Symbiont and Rice Growth-Promoting Endophyte Rhizobium sp. Strain IRBG74

Author:
Matthew B. Crook; Shubhajit Mitra; Jean-Michel Ané; Michael J. Sadowsky; Prasad Gyaneshwar
Source:
Genome announcements 2013 v.1 no.6 pp. e00934-13
ISSN:
2169-8287
Subject:
Agrobacterium; Rhizobium; Sesbania; chromosomes; endophytes; genome; legumes; nitrogen fixation; nucleotide sequences; plasmids; rice; symbionts; wetlands
Abstract:
... Rhizobium sp. strain IRBG74 is the first known nitrogen-fixing symbiont in the Agrobacterium/Rhizobium clade that nodulates the aquatic legume Sesbania sp. and is also a growth-promoting endophyte of wetland rice. Here, we present the sequence of the IRBG74 genome, which is composed of a circular chromosome, a linear chromosome, and a symbiotic plasmid, pIRBG74a. ...
DOI:
10.1128/genomeA.00934-13
PubMed:
24265489
PubMed Central:
PMC3837170