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... The domestic cat Felis silvestris catus is known to be one of the most notorious invasive alien predators. Seabirds are typical taxonomic groups that have been impacted by free-ranging cats on islands, and their headless carcasses are frequently observed. We conducted genetic predator identification of the carcasses of streaked shearwater Calonectris leucomelas and described their characteristics ...
... We explored the genetic diversity and population genetic structure of an invasive alien species, the raccoon Procyon lotor, which was introduced into the Shikoku Island of Japan, using sequences of the mitochondrial control region and 10 polymorphic microsatellite loci. In 80 individuals examined, we detected two genetically divergent haplotypes, indicating that two maternal lineages had been intr ...
... Benten-Jima Rock, located off Cape Soya, Hokkaido, has been a Steller sea lion (SSL; Eumetopias jubatus) winter haulout for decades. The animals usually occupy the site from October to May. Observations have been sporadic, although the population count started to increase in 2005. We have monitored SSL numbers since 2012 using several survey methods, such as observation by direct counting and remo ...
Castanopsis cuspidata; Japan; Sus scrofa; acorns; bamboos; body condition; crop damage; food composition; mammals; masting; stomach; wild boars
Abstract:
... We analyzed the stomach contents of wild boars (Sus scrofa) inhabiting evergreen forests in western Japan and found that they were dependent on the masting of acorns of Castanopsis cuspidata. The increased availability of C. cuspidata acorns positively affected their consumption by wild boars. In the good mast years, wild boars consumed C. cuspidata acorns from November to June of the following ye ...
... In a heavy snowfall area in northeastern Japan, we clarified the diel activity patterns of and seasonal differences in three sympatric carnivores (red foxes, raccoon dogs, and Japanese martens) during winter and spring, and the interspecific differences among the activity patterns in each season. The activity time of the target species was obtained by camera-trap surveys at seven sites around the ...
... We studied home range use of crop-raiding Japanese macaques (Macaca fuscata) in Shiga Prefecture, central Japan, to address the effects of vegetation structure, specifically forest edge, on their habitat utilization. We compared the home range use of a troop inhabiting a rural area surrounded by a coniferous plantation with that of a troop inhabiting deciduous/coniferous forest mixed area. We then ...
Japan; Tursiops aduncus; Tursiops truncatus; body length; bycatch; dolphins; females; haplotypes; males; microsatellite repeats; mitochondrial DNA
Abstract:
... Hybrid cetaceans occur in both captive and natural environments. This study is the first to describe the external morphological and genetic characterizations of natural intrageneric hybridization between the common bottlenose dolphin, Tursiops truncatus, and the Indo-Pacific bottlenose dolphin, T. aduncus, in Japanese waters. In November 2019, a stray dolphin was seen in Moriura Bay, Wakayama, Jap ...
Japan; Ursus thibetanus; hibernation; life history; mammals; process control
Abstract:
... Hibernation (denning) is an important aspect of the life history of Asian black bears (Ursus thibetanus), and denning chronology can be influenced by biotic and abiotic factors. We investigated activity patterns during the pre-denning period of Asian black bears using statistical process control in combination with activity sensors to quantitatively identify a marked reduction in activity from 200 ...
... Based on mitochondrial cytochrome b gene sequences, we report representatives of the Lineage IV of Rattus tanezumi (Rodentia: Muridae) from Miyakojima, Taramajima, and Yonagunijima Islands in the southern Ryukyus as the first record of the lineage from Japan. The new record of Lineage IV provides an addition to the mammal fauna of Japan essentially at the species level. Accordingly, the genus Ratt ...
Japan; Macaca fuscata; conflict management; mammals; people
Abstract:
... The populations of the Japanese macaque (Macaca fuscata), which were vulnerable until the early 20th century, have recently recovered. However, this recovery process has rarely been hailed as a conservation success, because it has triggered serious conflicts between people and the macaques. The key exacerbating causes of the conflicts have been the drastic changes in the interrelations between the ...
... The taxonomy and phylogeny of the subgenus Mus, the Eurasian lineage of the genus Mus, remain unresolved, even for the house mouse (Mus musculus). While the subgenus is diverse in Asia, few studies cover both its morphology and molecular phylogeny. We re-examined 70 specimens identified as M. cervicolor that were collected from central Nepal in 1968 and 1975 and are currently deposited in the Hokk ...
... The generic name of the humpback whale, Megaptera was named after their forelimb, which means a “large wing”. New whale remains (specimen number: OMNH-QV 60) including the right scapula, humerus, and radius from the Namba Formation, Holocene in Osaka, Japan is reported as a humpback whale, Megaptera novaeangliae based on diagnoses of the species; having reduced acromion and coracoid processes of t ...
... The diel activity pattern is a key factor in the coexistence mechanism of sympatric wild animals, enabling temporal niche partitioning. Although previous studies on sympatric ungulates (sika deer, Japanese serow, and wild boar) have reported dietary and spatial niche partitioning, temporal niche partitioning in these sympatric ungulates is not well understood. In this study, we aimed to elucidate ...
... In response to severe vegetation degradation caused by sika deer in Japan, it is important to understand the habitat use trends of the sika deer and sympatric Japanese serows to promote the management and conservation of both species and their habitats. This study used camera traps to examine the trends of habitat use of the two sympatric ungulates in the Kuraiyama Experimental Forest (KEF) at Gif ...
Eumetopias jubatus; Japan; coasts; continental shelf; mammals; seasonal variation; spring; statistical analysis; Sea of Japan
Abstract:
... Aerial surveys were conducted to estimate the abundance of wintering populations of Steller sea lions (SSLs; Eumetopias jubatus) in the Sea of Japan originated from Russian waters using the line transect sampling method during spring from 2005 to 2019. The survey areas covered the continental shelf off the western coast of Hokkaido. A total of 28 196 km survey effort was made through the study per ...
... Several statistical models have recently been developed to estimate animal density using camera trappings without individual animal recognition. However, most models assume that detection by camera traps of animals passing a specific area of the camera view is perfect. A recently developed REST model (Nakashima et al. 2018; Journal of Applied Ecology 55: 735–744) also depends on the trapping rates ...
... Age-specific changes in deer demographic parameters under food limitation are an important factor in predicting the post-population-crash dynamics of irruptive deer populations. To evaluate the differences in age-class-at-death between the initial irruption and post-population-crash phases of a sika deer (Cervus nippon) population, we analyzed a dataset of naturally dead carcasses from an introduc ...
Japan; Loliginidae; Ommastrephidae; Stenella coeruleoalba; chi-square distribution; diet; females; males; muscles; prey species; stomach; East China Sea
Abstract:
... Striped dolphins (Stenella coeruleoalba) mass-stranded on 26 April 2013 at Minamisatsuma, Kagoshima Prefecture, in southern Japan (East China Sea). The diet of the mass-stranded striped dolphins was investigated to reveal their foraging pattern through analyses of the stomach contents and stable isotopes in muscle. Of 26 stomachs sampled, 25 contained hard parts of prey animals; no fleshy remains ...
... It's not always possible to obtain samples from dead male pinnipeds that are fresh enough to determine the histological characteristics of spermatogenesis and their stage of sexual maturity. We propose that the morphometrics of genital organs of northern fur seals, Callorhinus ursinus, can be used as a new indicator of sexual maturity. We analyzed data from collected records of male fur seals arou ...
... Nucleotide sequences of the mitochondrial D-loop region were examined in three wild rodents (Apodemus argenteus, Apodemus speciosus, and Myodes smithii) on the northern slope of Mt. Fuji, the highest mountain in Japan, to elucidate the past evolutionary and present anthropogenic processes shaping their genetic diversity. Nucleotide diversity, median-joining network, and mismatch distribution analy ...
... Specimen number OMNH-QV 4815, including the skull, mandibles, fused basihyal and thyrohyal, vertebrae, ribs, and scapula from the Namba Formation (Holocene), in Osaka City, Japan is identified as Balaenoptera physalus by having the thick anteriorly projected and laterally narrower basihyal and thyrohyal complex, and slender mandibles with laterally tilted coronoid processes. OMNH-QV 4815 is the se ...
... Native sika deer (Cervus nippon) had not been observed in and around Sasebo City, Nagasaki Prefecture, Kyushu, Japan. However, deer have recently been confirmed in this area, and the number of individuals and the range have been expanding, causing damage to forestry and natural vegetation. Although the origin of these deer is unknown, it may be derived from Formosan sika deer (C. n. taiouanus), wh ...
... Japanese macaques and alien macaques have hybridized in the Boso Peninsula, Chiba Prefecture, Japan. In this study, the origin of the alien species was investigated by molecular assessments with mitochondrial DNA (mtDNA) and Y-chromosome genes. Maternal origin was assessed by comparing mtDNA sequence records. The results suggested that the alien species in the southern part of peninsula originated ...
Mustela; islands; multivariate analysis; skull; Japan
Abstract:
... Skull morphology of Mustela itatsi from two islands adjacent to Kyushu, Kamikoshikijima and Yakushima Isls., Kagoshima Prefecture were compared with populations from mainland Japan. Although size and shape variation of these island populations were within whole species range of variation, the size variation was less than that of some mainland populations. In contrast, canonical variate analysis sh ...
... The masked palm civet (Paguma larvata) in Japan is considered as an alien species; however, the details on introduction routes to Japan and the expansion history are still unclear. In the present study, to further solve these questions, we analyzed the mitochondrial DNA control region (523 base-pairs) of 226 individuals from Japan and Taiwan, and identified 13 haplotypes, which are phylogeneticall ...
Procyon lotor; ecological invasion; females; genetic analysis; genetic background; genetic markers; genetic variation; haplotypes; invasive species; landscapes; mammals; mitochondria; mitochondrial DNA; single nucleotide polymorphism; Central America; Japan
Abstract:
... Ecological genetic analyses have recently been applied to the field of biological invasions to describe the genetic background of the invasive species. The raccoon (Procyon lotor) is a medium-sized mammal that is native to North and Central America and has been naturalized into several countries worldwide. In the Boso Peninsula, Japan, raccoons were estimated to have been introduced during the 199 ...
... In this study, we examined a genetic variation of killer whales, Orcinus orca, from off the coast of Hokkaido, Japan, by sequencing the D-loop and cytochrome b (Cyt-b) regions of the mitochondrial genome. Three D-loop and two Cyt-b haplotypes were identified from eight skin biopsies. These five haplotypes had been previously deposited at GenBank and the International Nucleotide Sequence Database C ...
... Despite of great variation of food habits of the raccoon dogs (Nyctereutes procyonoides) on the Japanese archipelago, information of the food habits of them in the warm temperate zone in southern Japan is limited. The food habits of them on Suwazaki Peninsula in western Shikoku Island, southwestern Japan, were studied using fecal analysis. The sampling period spanned May 2019 to April 2020. The po ...
Japan; Macaca fuscata; case studies; conflict management; crop damage; decision making; human population; mammals; questionnaires; spatial data; statistics; urban agriculture
Abstract:
... A decrease in the amount of crop damage by Japanese macaques (Macaca fuscata) is often defined as the primary official goal for conflict resolution. Recent government-led countermeasures have resulted in a decline in the amount of such damage, at least per the government statistics; however, residents rarely recognize this decline as a success of conflict management. We hypothesized that this unex ...
Apodemus argenteus; B chromosomes; X chromosome; aneuploidy; females; fluorescence; karyotyping; mice; mountains; quinacrine; staining; Japan
Abstract:
... We studied an occurrence of chromosomal aneuploidy for ten individuals in the small Japanese field mouse, Apodemus argenteus, from the western mountainous area of Kanagawa Prefecture, Honshu, Japan. Eight of the individuals examined showed the standard 2n = 46 and FNa = 48 constitutions as the most frequent karyotype. However, of those eight individuals, seven carried an inter-cellular mosaicism w ...
... Deer have been artificially introduced into many countries that are not within their native range. In some cases, they have disturbed the natural ecosystem in the invaded area. On Okinoshima Island in Wakayama Prefecture, Japan, exotic deer were introduced from Taiwan in 1955 and have since bred in the wild, raising concerns about their invasion into the habitats of, and hybridization with, the na ...
... Dental microwear texture analysis (DMTA) can be used to quantitatively evaluate tooth surface roughness and has been used to distinguish herbivorous ungulates according to interspecific dietary differences among grazers, browsers, and mixed feeders. Moreover, DMTA has been applied among local populations with intraspecific dietary variation. In general, the tooth surfaces of grazing species/popula ...
Phoca largha; breeding sites; cytochrome b; genes; genetic variation; haplotypes; mitochondria; mitochondrial genome; population structure; Japan
Abstract:
... We investigated the population structure of the spotted seal, Phoca largha, around Hokkaido, Japan, inferred from sequence variations of the mitochondrial cytochrome b gene. Twenty-six haplotypes were identified in 52 individuals, and 21 of them were newly found in the present study. To detect population structure, samples were divided into three groups—Mamiya, Okhotsk, and Habomai—based on breedi ...
Sus scrofa; alleles; archaeology; gene flow; genetic similarity; genetic structure; haplotypes; mitochondrial DNA; pseudogenes; swine; wild boars; Japan
Abstract:
... We investigated the genetic structure among populations of the Ryukyu wild boar (Sus scrofa riukiuanus) on Tokunoshima Island by analyzing DNA from modern and archaeological samples. Four and two mtDNA haplotypes were found in the modern and archaeological samples, respectively. One haplotype was shared between the modern and archaeological samples. Of the seven haplotypes, four were only found on ...
concrete; dams (hydrology); rivers; sediments; shrews; streams; surveys; Japan
Abstract:
... The concrete walls of check dams are considered a physical barrier for aquatic and semiaquatic animals that inhabit mountain streams. Traveling behaviors around concrete check dams by the Japanese water shrew Chimarrogale platycephalus, a semi-aquatic mammal, were directly observed via radio-tracking in Kamikoshi Stream in central Honshu, Japan. Traveling behaviors were mainly observed on the wet ...
Colobus guereza; Japan; body weight; color; fur; monkeys; neonates; social behavior
Abstract:
... Colobine monkeys generally spend less time each day engaged in social interactions than other primates. However, a notable feature of their social interaction involves females exchanging infants (i.e., infant handling). Here, we report on the handling of an infant in relation to pelage color change in a group of black-and-white colobus (Colobus guereza) housed in the Japan Monkey Centre. We found ...
... Forefoot characteristics of the Ryukyu long-furred rat, Diplothrix legata, in the Amami-oshima, Tokunoshima, and Okinawajima Islands of the southern part of Japan (the Nansei Archipelago), were analyzed morphologically considering its arboreal lifestyle. The presence of a nail on the pollex was confirmed and seemed to be regarded as an arboreal feature, based on the presence of nails in other arbo ...
females; genetic analysis; genetic markers; genetic relationships; genetic variation; inbreeding; males; moles; population structure; radio telemetry; Japan
Abstract:
... Sex-biased dispersal (SBD) is usually accounted for by the consequences of resource competition, inbreeding avoidance, and breeding competition. Although SBD has been reported in many mammalian species, little is known about it in subterranean species, like moles, whose dispersal from a natal place cannot be easily studied using conventional methods such as direct observations and radio-telemetry. ...
... The sika deer (Cervus nippon) is native to eastern Asia and commonly occurs on Hokkaido Island, northern Japan. The nearby localities of the southern Kuril Islands, located east of Hokkaido, have not been regarded as part of the sika deer's regular range, despite isolated observations and trace evidence described before 2017. Here we consolidate the information of the sika deer in the southern Kur ...
Prionailurus bengalensis euptilurus; cameras; habitats; islands; sago; Japan; Korean Peninsula
Abstract:
... Otters are thought to be extinct in Japan, although they were widely distributed there until the early 20th century. Records of otters on Tsushima Islands, located between Kyushu and the Korean Peninsula, were found only in two sources from about 1735 and 1809, and there has been no evidence of their existence since the middle of 19th century until now. We set infrared trail cameras to monitor the ...
... Deer can strongly affect other species as a keystone species. The intensity of their herbivory impact on forest vegetation is suggested to be affected by not only deer density but also by other environmental factors such as landscape components. Especially, artificial grasslands such as pastures and meadows possibility affect deer impact on forest vegetation by altering deer foraging behavior. The ...
... Spatial separation and dietary differences may allow the coexistence of similar sized ungulate species. Over the past two decades, populations of the sika deer (Cervus nippon) have increased markedly and overlapped with the habitats of the Japanese serow (Capricornis crispus). Recently, the Japanese serow population has declined and shifted its habitat from higher to lower altitudes in Shikoku, Ja ...
... We examined the relationship between the feeding habits of Asian black bears (Ursusthibetanus) and fruit availability during summer and autumn from 2008 to 2011 in the Ashio-Nikko Mountains, Japan. Our main questions were as follows: 1) How does the availability of multiple fruit species influence the feeding habits during summer and autumn? and 2) When do bears begin to forage on hard mast in rel ...
... In recent decades, invasive animals have disturbed the native ecosystem, via intraspecific and interspecific genetic hybridization. Previously, maternally-inherited mitochondrial DNA analysis detected two genetically distinct lineages of the sika deer (Cervus nippon) in the Japanese Archipelago and revealed the coexistence of both lineages mainly in the central part of Toyama Prefecture in Japan. ...
Vulpes vulpes; adults; feces; foxes; gene flow; genetic variation; genotyping; microsatellite repeats; population size; urban areas; Japan
Abstract:
... Mt. Hakodate, Hokkaido, is a small mountain geographically isolated by the sea and urban area, and some red foxes (Vulpes vulpes) live there. In consideration of the specific geographical environment, we made a hypothesis that the fox population on Mt. Hakodate is small in size and isolated, and consequently its genetic variation is low, and then tested it. To investigate the genetic variation, we ...
... Although counting cementum annuli of lower incisor is a reliable method for age estimation in cervids, it inevitably involves the destruction of specimens. Here we studied the relationship between cranial suture closure patterns and age to test the possibility of cranial suture closure as a non-destructive age indicator in sika deer (Cervus nippon) specimens from Kinkazan Island, Japan, for which ...
Crocidura; DNA; cytochrome b; genes; heterozygosity; mitochondria; mitochondrial genome; mutation; nucleotide sequences; phylogeny; phylogeography; shrews; Japan; South Korea
Abstract:
... The Japanese white-toothed shrew (Crocidura dsinezumi) is a species endemic to Japan. For this species, only minimal phylogeographic investigations have been conducted. We obtained DNA sequences of mitochondrial cytochrome b and control region and nuclear ApoB genes for 191 individuals of C. dsinezumi from 107 locations collected throughout its known range. In the phylogenetic trees based on mitoc ...
Ursus thibetanus; adults; females; food availability; lactation; life history; parturition; progeny; reproductive success; yearlings; Japan
Abstract:
... Very little is known about the cementum annuli of Asian black bears (Ursus thibetanus). We collected the first premolar tooth from adult female bears in central Japan to investigate whether reproductive history was reflected in cementum annuli width; previous studies have indicated that this is possible in other bear species. We calculated the proportional width index (PWI) value as an index of an ...
... This study examined how seed feeding by the Ryukyu long-furred rat Diplothrix legata affects germination of five plants (Cerasus campanulata, Actinidia rufa, Ficus erecta, Oreocnide pedunculata, and Melastoma candidum) in Okinawajima Island, Japan. The germination rates of seeds from fresh fruit and fecal pellets of two captive rats, as well as the feeding behaviors, were observed. Most of C. camp ...
... Occurrence of bark-feeding damage by sika deer (Cervus nippon) was examined at 26 mixed plantations comprised of both sugi (Cryptomeria japonica) and hinoki cypress (Chamaecyparis obtusa) in Mie Prefecture, central Japan. There was no significant difference in damage ratios with the tree species in plantations with only slight damage. In plantations with a damage ratio over 5% in either tree speci ...