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You searched for: Journal Microbial ecology Remove constraint Journal: Microbial ecology Publication Year 2019 Remove constraint Publication Year: 2019 Source 2019 v.77 no.2 Remove constraint Source: 2019 v.77 no.2
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1. Altering the Gut Microbiome of Cattle: Considerations of Host-Microbiome Interactions for Persistent Microbiome Manipulation

Author:
Clemmons, Brooke A.; Voy, Brynn H.; Myer, Phillip R.
Source:
Microbial ecology 2019 v.77 no.2 pp. 523-536
ISSN:
0095-3628
Subject:
beef cattle; beef industry; biomarkers; diet; energy; feed conversion; feeds; host specificity; host-pathogen relationships; intestinal microorganisms; methane production; microbiome; nitrogen; phenotype; red meat; rumen; selection criteria
Abstract:
... The beef cattle industry represents a significant portion of the USA’s agricultural sect, with beef cattle accounting for the most red meat consumed in the USA. Feed represents the largest input cost in the beef industry, accounting for approximately 70% of total input cost. Given that, novel methods need to be employed to optimize feed efficiency in cattle to reduce monetary cost as well as envir ...
DOI:
10.1007/s00248-018-1234-9

2. An Uncharacterized Member of the Gls24 Protein Superfamily Is a Putative Sensor of Essential Amino Acid Availability in Streptococcus pneumoniae

Author:
Ferrándiz, María J.; Cercenado, María I.; Domenech, Miriam; Tirado-Vélez, José M.; Escolano-Martínez, María S.; Yuste, Jose; García, Ernesto; de la Campa, Adela G.; Martín-Galiano, Antonio J.
Source:
Microbial ecology 2019 v.77 no.2 pp. 471-487
ISSN:
0095-3628
Subject:
Enterococcus; Gram-positive bacteria; Staphylococcus; Streptococcus pneumoniae; cadmium; cattle; essential amino acids; genes; metabolism; mice; mutants; nasopharynx; oligopeptides; phenotype; proteins; sugars; temperature; transcription (genetics); virulence
Abstract:
... Proteins belonging to the Gls24 superfamily are involved in survival of pathogenic Gram-positive cocci under oligotrophic conditions and other types of stress, by a still unknown molecular mechanism. In Firmicutes, this superfamily includes three different valine-rich orthologal families (Gls24A, B, C) with different potential interactive partners. Whereas the Streptococcus pneumoniae Δgls24A dele ...
DOI:
10.1007/s00248-018-1218-9

3. Bioreactivity and Microbiome of Biodeposits from Filter-Feeding Bivalves

Author:
Murphy, Anna E.; Kolkmeyer, Rebecca; Song, Bongkuen; Anderson, Iris C.; Bowen, Jennifer
Source:
Microbial ecology 2019 v.77 no.2 pp. 343-357
ISSN:
0095-3628
Subject:
Alteromonadales; Crassostrea virginica; Mercenaria mercenaria; Rhodobacterales; Thiotrichales; ammonium; benthic zone; biochemical pathways; biogeochemical cycles; clams; coastal ecosystems; denitrification; dissolved inorganic carbon; ecological function; environmental factors; eutrophication; feeding behavior; high-throughput nucleotide sequencing; microbial communities; microbiome; mussels; organic matter; oysters; physiology; sediments; water quality
Abstract:
... Bivalves serve an important ecosystem function in delivering organic matter from pelagic to benthic zones and are important in mediating eutrophication. However, the fate of this organic matter (i.e., biodeposits) is an important consideration when assessing the ecological roles of these organisms in coastal ecosystems. In addition to environmental conditions, the processing of biodeposits is depe ...
DOI:
10.1007/s00248-018-01312-4

4. Characterisation of the Pacific Oyster Microbiome During a Summer Mortality Event

Author:
King, William L.; Jenkins, Cheryl; Go, Jeffrey; Siboni, Nachshon; Seymour, Justin R.; Labbate, Maurizio
Source:
Microbial ecology 2019 v.77 no.2 pp. 502-512
ISSN:
0095-3628
Subject:
Crassostrea gigas; Ostreid herpesvirus 1; Vibrio harveyi; bacteria; disease outbreaks; estuaries; microbiome; mortality; muscles; oysters; pathogens; ribosomal RNA; summer; viruses; Australia
Abstract:
... The Pacific oyster, Crassostrea gigas, is a key commercial species that is cultivated globally. In recent years, disease outbreaks have heavily impacted C. gigas stocks worldwide, with many losses incurred during summer. A number of infectious agents have been associated with these summer mortality events, including viruses (particularly Ostreid herpesvirus 1, OsHV-1) and bacteria; however, cases ...
DOI:
10.1007/s00248-018-1226-9

5. Colonization and Competition Dynamics of Plant Growth-Promoting/Inhibiting Bacteria in the Phytosphere of the Duckweed Lemna minor

Author:
Ishizawa, Hidehiro; Kuroda, Masashi; Inoue, Kanako; Inoue, Daisuke; Morikawa, Masaaki; Ike, Michihiko
Source:
Microbial ecology 2019 v.77 no.2 pp. 440-450
ISSN:
0095-3628
Subject:
Acinetobacter; Asticcacaulis excentricus; Lemna minor; aquatic environment; aquatic plants; bacterial colonization; biogeochemical cycles; colonizing ability; ecological balance; host plants; plant growth; plant growth-promoting rhizobacteria
Abstract:
... Despite the considerable role of aquatic plant-associated bacteria in host plant growth and nutrient cycling in aquatic environments, the mode of their plant colonization has hardly been understood. This study examined the colonization and competition dynamics of a plant growth-promoting bacterium (PGPB) and two plant growth-inhibiting bacteria (PGIB) in the aquatic plant Lemna minor (common duckw ...
DOI:
10.1007/s00248-018-1306-x

6. Comparison of Actinomycete Community Composition on the Surface and Inside of Japanese Black Pine (Pinus thunbergii) Tree Roots Colonized by the Ectomycorrhizal Fungus Cenococcum geophilum

Author:
Sakoda, Shoyo; Aisu, Kana; Imagami, Hiroki; Matsuda, Yosuke
Source:
Microbial ecology 2019 v.77 no.2 pp. 370-379
ISSN:
0095-3628
Subject:
Cenococcum geophilum; Pinus thunbergii; Streptomyces; bacteria; bacterial communities; community structure; ectomycorrhizae; forest ecosystems; genome; isolation techniques; mycorrhizal fungi; ribosomal DNA; root tips; sequence analysis; trees
Abstract:
... Various bacteria are associated with ectomycorrhizal roots, which are symbiotic complexes formed between plant roots and fungi. Among these associated bacteria, actinomycetes have received attention for their ubiquity and diverse roles in forest ecosystems. Here, to examine the association of actinomycetes with ectomycorrhizal root tips, we compared the bacterial and actinomycete communities on th ...
DOI:
10.1007/s00248-018-1221-1

7. Correction to: Co-occurrence Networks Among Bacteria and Microbial Eukaryotes of Lake Baikal During a Spring Phytoplankton Bloom

Author:
Mikhailov, Ivan S.; Zakharova, Yulia R.; Bukin, Yuri S.; Galachyants, Yuri P.; Petrova, Darya P.; Sakirko, Maria V.; Likhoshway, Yelena V.
Source:
Microbial ecology 2019 v.77 no.2 pp. 558
ISSN:
0095-3628
Subject:
algal blooms; bacteria; eukaryotic cells; Lake Baikal
Abstract:
... The original version of this article unfortunately contained mistakes in the legends of figures. ...
DOI:
10.1007/s00248-018-1307-9

8. Correction to: Glycine Betaine and Ectoine Are the Major Compatible Solutes Used by Four Different Halophilic Heterotrophic Ciliates

Author:
Weinisch, Lea; Kirchner, Isabell; Grimm, Maria; Kühner, Steffen; Pierik, Antonio J.; Rosselló-Móra, Ramon; Filker, Sabine
Source:
Microbial ecology 2019 v.77 no.2 pp. 332
ISSN:
0095-3628
Subject:
Ciliophora; betaine; solutes
Abstract:
... The original version of this article unfortunately contained mistakes in the author affiliation, the references given in two tables and in a figure legend. ...
DOI:
10.1007/s00248-018-1241-x

9. Geographical Patterns of nirS Gene Abundance and nirS-Type Denitrifying Bacterial Community Associated with Activated Sludge from Different Wastewater Treatment Plants

Author:
Zhang, Haihan; Feng, Ji; Chen, Shengnan; Zhao, Zhenfang; Li, Baoqin; Wang, Yue; Jia, Jingyu; Li, Sulin; Wang, Yan; Yan, Miaomiao; Lu, Kuanyu; Hao, Huiyan
Source:
Microbial ecology 2019 v.77 no.2 pp. 304-316
ISSN:
0095-3628
Subject:
DNA; Pseudomonas; Thauera; activated sludge; bacterial communities; carbon; community structure; denitrification; denitrifying bacteria; ecosystems; genes; high-throughput nucleotide sequencing; latitude; multivariate analysis; nitrogen; quantitative polymerase chain reaction; total nitrogen; wastewater; wastewater treatment
Abstract:
... Denitrifying bacteria is a driver of nitrogen removal process in wastewater treatment ecosystem. However, the geographical characteristics of denitrifying bacterial communities associated with activated sludge from diverse wastewater treatment plants (WWTPs) are still unclear. Here, quantitative PCR and next-generation sequencing of the nirS gene were applied to characterize the abundance and deni ...
DOI:
10.1007/s00248-018-1236-7

10. Glycine Betaine and Ectoine Are the Major Compatible Solutes Used by Four Different Halophilic Heterotrophic Ciliates

Author:
Weinisch, Lea; Kirchner, Isabell; Grimm, Maria; Kühner, Steffen; Pierik, Antonio J.; Rosselló-Móra, Ramon; Filker, Sabine
Source:
Microbial ecology 2019 v.77 no.2 pp. 317-331
ISSN:
0095-3628
Subject:
Ciliophora; betaine; electron microscopy; environmental factors; eukaryotic cells; genes; glaucoma; habitats; heterotrophs; nuclear magnetic resonance spectroscopy; osmotolerance; prokaryotic cells; ribosomal RNA; salinity; solutes
Abstract:
... One decisive factor controlling the distribution of organisms in their natural habitats is the cellular response to environmental factors. Compared to prokaryotes, our knowledge about salt adaptation strategies of microbial eukaryotes is very limited. We, here, used a recently introduced approach (implementing proton nuclear magnetic resonance spectroscopy) to investigate the presence of compatibl ...
DOI:
10.1007/s00248-018-1230-0

11. Latitudinal and Vertical Variation of Synechococcus Assemblage Composition Along 170° W Transect From the South Pacific to the Arctic Ocean

Author:
Xia, Xiaomin; Cheung, Shunyuan; Endo, Hisashi; Suzuki, Koji; Liu, Hongbin
Source:
Microbial ecology 2019 v.77 no.2 pp. 333-342
ISSN:
0095-3628
Subject:
Synechococcus; basins; chlorophyll; ecological differentiation; niches; oceans; species richness; summer; surface water; water temperature; Arctic region
Abstract:
... Synechococcus is one of the most widely distributed and abundant picocyanobacteria in the global oceans. Although latitudinal variation of Synechococcus assemblage in marine surface waters has been observed, few studies compared Synechococcus assemblage composition in surface and subsurface waters at the basin scale. Here, we report marine Synechococcus diversity in the surface and deep chlorophyl ...
DOI:
10.1007/s00248-018-1308-8

12. Light and Dehydration but Not Temperature Drive Photosynthetic Adaptations of Basal Streptophytes (Hormidiella, Streptosarcina and Streptofilum) Living in Terrestrial Habitats

Author:
Pierangelini, Mattia; Glaser, Karin; Mikhailyuk, Tatiana; Karsten, Ulf; Holzinger, Andreas
Source:
Microbial ecology 2019 v.77 no.2 pp. 380-393
ISSN:
0095-3628
Subject:
Klebsormidium; acclimation; algae; amino acids; ancestry; drought tolerance; embryophytes; habitats; lifestyle; photons; photosynthesis; radiation resistance; spectral analysis; temperature; ultraviolet radiation
Abstract:
... Streptophyte algae are the ancestors of land plants, and several classes contain taxa that are adapted to an aero-terrestrial lifestyle. In this study, four basal terrestrial streptophytes from the class Klebsormidiophyceae, including Hormidiella parvula; two species of the newly described genus Streptosarcina (S. costaricana and S. arenaria); and the newly described Streptofilum capillatum were i ...
DOI:
10.1007/s00248-018-1225-x
PubMed:
29974184
PubMed Central:
PMC6394494

13. Metagenomic Analysis of Zinc Surface–Associated Marine Biofilms

Author:
Ding, Wei; Zhang, Weipeng; Alikunhi, Nabeel Mannalamkunnath; Batang, Zenon; Pei, Bite; Wang, Ruojun; Chen, Lianguo; Al-Suwailem, Abdulaziz; Qian, Pei-Yuan
Source:
Microbial ecology 2019 v.77 no.2 pp. 406-416
ISSN:
0095-3628
Subject:
biofilm; biofouling; genes; metagenomics; microbial communities; microorganisms; ribosomal RNA; seawater; species diversity; toxicity; transporters; transposases; zinc; Red Sea
Abstract:
... Biofilms are a significant source of marine biofouling. Marine biofilm communities are established when microorganisms adhere to immersed surfaces. Despite the microbe-inhibiting effect of zinc surfaces, microbes can still attach to the surface and form biofilms. However, the diversity of biofilm-forming microbes that can attach to zinc surfaces and their common functional features remain elusive. ...
DOI:
10.1007/s00248-018-01313-3

14. Microbiome Diversity in Cotton Rhizosphere Under Normal and Drought Conditions

Author:
Ullah, Abid; Akbar, Adnan; Luo, Qingqing; Khan, Aamir Hamid; Manghwar, Hakim; Shaban, Muhammad; Yang, Xiyan
Source:
Microbial ecology 2019 v.77 no.2 pp. 429-439
ISSN:
0095-3628
Subject:
Acidobacteria; Actinobacteria; Chloroflexi; Cyanobacteria; DNA; Gemmatimonadetes; Gossypium hirsutum; Proteobacteria; bacteria; bacterial communities; climate change; community structure; cotton; drought; drought tolerance; flowering; fungi; genes; high-throughput nucleotide sequencing; microbiome; rhizosphere; ribosomal RNA; soil; soil microorganisms; species diversity; water stress
Abstract:
... Climate change contributes to drought stress and subsequently affects crop growth, development, and yield. The microbial community, such as fungi and bacteria in the rhizosphere, is of special importance to plant productivity. In this study, soil collected from a cotton research field was used to grow cotton plants (Gossypium hirsutum cv. Jin668) under controlled environment conditions. Drought st ...
DOI:
10.1007/s00248-018-1260-7

15. Moisture Is More Important than Temperature for Assembly of Both Potentially Active and Whole Prokaryotic Communities in Subtropical Grassland

Author:
Lupatini, Manoeli; Suleiman, Afnan K. A.; Jacques, Rodrigo J. S.; Lemos, Leandro N.; Pylro, Victor S.; Van Veen, Johannes A.; Kuramae, Eiko E.; Roesch, Luiz F. W.
Source:
Microbial ecology 2019 v.77 no.2 pp. 460-470
ISSN:
0095-3628
Subject:
genes; grassland soils; grasslands; messenger RNA; microbial communities; ribosomal RNA; soil ecology; temperature
Abstract:
... Moisture and temperature play important roles in the assembly and functioning of prokaryotic communities in soil. However, how moisture and temperature regulate the function of niche- versus neutral-based processes during the assembly of these communities has not been examined considering both the total microbial community and the sole active portion with potential for growth in native subtropical ...
DOI:
10.1007/s00248-018-1310-1

16. Molecular Detection and Spatiotemporal Characterization of Labyrinthulomycete Protist Diversity in the Coastal Waters Along the Pearl River Delta

Author:
Bai, Mohan; Sen, Biswarup; Wang, Qiuzhen; Xie, Yunxuan; He, Yaodong; Wang, Guangyi
Source:
Microbial ecology 2019 v.77 no.2 pp. 394-405
ISSN:
0095-3628
Subject:
Labyrinthulomycetes; biogeochemical cycles; coastal water; genes; habitats; nitrogen; oligodeoxyribonucleotides; phosphates; population dynamics; protists; quantitative polymerase chain reaction; rapid methods; ribosomal RNA; river deltas; rivers
Abstract:
... The heterotrophic labyrinthulomycete protists have long been known to play an important role in the nutrient cycling of coastal seawater. Yet, their spatiotemporal abundance and diversity in polluted coastal waters remain poorly discussed, due in part to the paucity of a rapid detection method. To this end, we developed a qPCR detection method based on a newly designed primer pair targeting their ...
DOI:
10.1007/s00248-018-1235-8

17. Molecular Insights into Antimicrobial Resistance Traits of Commensal Human Gut Microbiota

Author:
Bag, Satyabrata; Ghosh, Tarini Shankar; Banerjee, Sayantan; Mehta, Ojasvi; Verma, Jyoti; Dayal, Mayanka; Desigamani, Anbumani; Kumar, Pawan; Saha, Bipasa; Kedia, Saurabh; Ahuja, Vineet; Ramamurthy, Thandavarayan; Das, Bhabatosh
Source:
Microbial ecology 2019 v.77 no.2 pp. 546-557
ISSN:
0095-3628
Subject:
anti-infective agents; antibiotic resistance; chromosomes; digestive system; disease control; drugs; ecosystems; enteropathogens; genetic traits; genotype; health services; horizontal gene transfer; humans; infectious diseases; interspersed repetitive sequences; intestinal microorganisms; livestock; multiple drug resistance; phenotype; progeny; resistance genes; virulent strains
Abstract:
... Antimicrobial resistance (AMR) among bacterial species that resides in complex ecosystems is a natural phenomenon. Indiscriminate use of antimicrobials in healthcare, livestock, and agriculture provides an evolutionary advantage to the resistant variants to dominate the ecosystem. Ascendency of resistant variants threatens the efficacy of most, if not all, of the antimicrobial drugs commonly used ...
DOI:
10.1007/s00248-018-1228-7

18. Nutrient Enrichment Alters Salt Marsh Fungal Communities and Promotes Putative Fungal Denitrifiers

Author:
Kearns, Patrick J.; Bulseco-McKim, Ashley N.; Hoyt, Helen; Angell, John H.; Bowen, Jennifer L.
Source:
Microbial ecology 2019 v.77 no.2 pp. 358-369
ISSN:
0095-3628
Subject:
bacteria; carbon; coastal sediments; denitrifying microorganisms; ecosystems; fungal communities; fungi; habitats; macrophytes; nitrates; nitrogen; nutrients; organic matter; salt marshes
Abstract:
... Enrichment of ecosystems with excess nutrients is occurring at an alarming rate and has fundamentally altered ecosystems worldwide. Salt marshes, which lie at the land-sea interface, are highly effective at removing anthropogenic nutrients through the action of macrophytes and through microbial processes in coastal sediments. The response of salt marsh bacteria to excess nitrogen has been document ...
DOI:
10.1007/s00248-018-1223-z

19. Spring and Late Summer Phytoplankton Biomass Impact on the Coastal Sediment Microbial Community Structure

Author:
Broman, Elias; Li, Lingni; Fridlund, Jimmy; Svensson, Fredrik; Legrand, Catherine; Dopson, Mark
Source:
Microbial ecology 2019 v.77 no.2 pp. 288-303
ISSN:
0095-3628
Subject:
Archaea; Bacillariophyceae; algal blooms; autumn; benthic organisms; biomass; coastal sediments; community structure; dissolved oxygen; fish; iron; microbial communities; microorganisms; mortality; niches; nitrates; nitrification; nitrites; nitrogen cycle; nucleotide sequences; nutrient content; oxygen; phytoplankton; ribosomal RNA; spring; summer; weather; Baltic Sea
Abstract:
... Two annual Baltic Sea phytoplankton blooms occur in spring and summer. The bloom intensity is determined by nutrient concentrations in the water, while the period depends on weather conditions. During the course of the bloom, dead cells sink to the sediment where their degradation consumes oxygen to create hypoxic zones (< 2 mg/L dissolved oxygen). These zones prevent the establishment of benthic ...
DOI:
10.1007/s00248-018-1229-6
PubMed:
30019110
PubMed Central:
PMC6394492

20. Subterranean Desert Rodents (Genus Ctenomys) Create Soil Patches Enriched in Root Endophytic Fungal Propagules

Author:
Miranda, Victoria; Rothen, Carolina; Yela, Natalia; Aranda-Rickert, Adriana; Barros, Johana; Calcagno, Javier; Fracchia, Sebastián
Source:
Microbial ecology 2019 v.77 no.2 pp. 451-459
ISSN:
0095-3628
Subject:
Ctenomys; burrowing; burrows; ecosystems; endophytes; excretion; field capacity; fungi; landscapes; mixing; nutrients; organic matter; physicochemical properties; rodents; shrubs; soil heterogeneity; texture; vesicular arbuscular mycorrhizae; Argentina
Abstract:
... Subterranean rodents are considered major soil engineers, as they can locally modify soil properties by their burrowing activities. In this study, the effect of a subterranean rodent of the genus Ctenomys on soil properties and root endophytic fungal propagules in a shrub desert of northwest Argentina was examined. Our main goal was to include among root endophytic fungi not only arbuscular mycorr ...
DOI:
10.1007/s00248-018-1227-8