U.S. flag

An official website of the United States government

Dot gov

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Https

Secure .gov websites use HTTPS
A lock ( ) or https:// means you’ve safely connected to the .gov website. Share sensitive information only on official, secure websites.

PubAg

Main content area

You searched for: Journal name Soil biology & biochemistry Remove constraint Journal name: Soil biology & biochemistry Publication year rev 7978-2022 Remove constraint Publication year rev: 7978-2022 Source 2022 v.166 Remove constraint Source: 2022 v.166
Start Over

Search

34  Search Results

« Previous | 1 - 20 of 34 |
Number of results to display per page

Search Results

1. Cautionary notes on the use of co-occurrence networks in soil ecology

Author:
Marta Goberna; Miguel Verdú
Source:
Soil biology & biochemistry 2022 v.166 pp. 108534
ISSN:
0038-0717
Subject:
biochemistry; community structure; data collection; fauna; microbiome; phylogeny; soil; soil biology; soil ecology
Abstract:
... Soil ecology is witnessing exponential growth in the number of studies using co-occurrence network analysis. Researchers reconstruct networks based on the co-occurrence of taxa or genes across soil samples at a wide range of geographic scales - from single aggregates to the whole planet - and taxonomic scopes, some studies targeting specific taxa or guilds to others surveying the whole microbiome ...
DOI:
10.1016/j.soilbio.2021.108534

2. Changes in soil bacterial communities and nitrogen mineralization with understory vegetation in boreal larch forests

Author:
Ruihan Xiao; Xiuling Man; Beixing Duan; Tijiu Cai; Zhaoxin Ge; Xuefei Li; Timo Vesala
Source:
Soil biology & biochemistry 2022 v.166 pp. 108572
ISSN:
0038-0717
Subject:
Actinobacteria; Chloroflexi; Larix; Rhododendron tomentosum; bacterial communities; biochemistry; botanical composition; climatic zones; community structure; equations; forest types; microbial biomass; mineralization; nitrogen; nitrogen content; soil; soil bacteria; soil biology; soil nutrients; understory; China
Abstract:
... Plant community composition can alter soil microbial community structure and function, and further influence the process of soil N transformation. However, this effect is rarely noticed in forest types characterized by understory vegetation, especially in N-limited boreal forests where the understory vegetation substantially contributes to soil nutrient cycling. To investigate whether forest types ...
DOI:
10.1016/j.soilbio.2022.108572

3. Disentangling the impact of contrasting agricultural management practices on soil microbial communities – Importance of rare bacterial community members

Author:
Bei Liu; Donatienne Arlotti; Bruno Huyghebaert; Christoph C. Tebbe
Source:
Soil biology & biochemistry 2022 v.166 pp. 108573
ISSN:
0038-0717
Subject:
agricultural land; bacterial communities; barley; corn; crop diversification; crop residues; eutrophication; field experimentation; genes; long term effects; peas; soil; soil biology; soil microorganisms; spring; winter; winter wheat
Abstract:
... Agriculture has a strong effect on soil microbial communities, but it is still unclear how different management practices drive their diversity and composition. To disentangle the effects of temporally contrasting crop management practices on soil microbial abundance and prokaryotic diversity, we analysed samples from a long-term agricultural field experiment, in which plant residues were exported ...
DOI:
10.1016/j.soilbio.2022.108573

4. Environmental filtering controls soil biodiversity in wet tropical ecosystems

Author:
Haiying Cui; Peter M. Vitousek; Sasha C. Reed; Wei Sun; Blessing Sokoya; Adebola R. Bamigboye; Jay Prakash Verma; Arpan Mukherjee; Gabriel F. Peñaloza-Bojacá; Alberto L. Teixido; Pankaj Trivedi; Ji-Zheng He; Hang-Wei Hu; Kenny Png; Manuel Delgado-Baquerizo
Source:
Soil biology & biochemistry 2022 v.166 pp. 108571
ISSN:
0038-0717
Subject:
Hawaii; acidification; biodiversity; field experimentation; microbial activity; nitrogen; nutrient availability; pH; phosphorus; protists; soil acidification; soil formation; soil surveys
Abstract:
... The environmental factors controlling soil biodiversity along resource gradients remain poorly understood in wet tropical ecosystems. Aboveground biodiversity is expected to be driven by changes in nutrient availability in these ecosystems, however, much less is known about the importance of nutrient availability in driving soil biodiversity. Here, we combined a cross-continental soil survey acros ...
DOI:
10.1016/j.soilbio.2022.108571

5. Global patterns in mycorrhizal mediation of soil carbon storage, stability, and nitrogen demand: A meta-analysis

Author:
Yuntao Wu; Meifeng Deng; Junsheng Huang; Sen Yang; Lulu Guo; Lu Yang; Jitendra Ahirwal; Ziyang Peng; Weixing Liu; Lingli Liu
Source:
Soil biology & biochemistry 2022 v.166 pp. 108578
ISSN:
0038-0717
Subject:
biochemistry; boreal forests; carbon sequestration; climate; data collection; ectomycorrhizae; grasslands; land use; meta-analysis; nitrogen; nitrogen content; particulate organic matter; soil carbon; soil organic matter; stoichiometry; subsoil; temperate forests; topsoil; tropical forests; vesicular arbuscular mycorrhizae
Abstract:
... Understanding what controls the soil organic matter (SOM) storage and its stability is important to predict how SOM will respond to environmental changes. The role of mycorrhizal fungi in mediating soil carbon (C) and nitrogen (N) cycling is increasingly recognized. However, how mycorrhizal fungi could affect C distribution and N demand of different soil fractions is largely unknown. Here, we comp ...
DOI:
10.1016/j.soilbio.2022.108578

6. Identification of the rhizosphere microbes that actively consume plant-derived carbon

Author:
Kunkun Fan; Hannah Holland-Moritz; Corinne Walsh; Xisheng Guo; Daozhong Wang; Yang Bai; Yong-guan Zhu; Noah Fierer; Haiyan Chu
Source:
Soil biology & biochemistry 2022 v.166 pp. 108577
ISSN:
0038-0717
Subject:
Triticum aestivum; carbon; carbon metabolism; genetic markers; growth promotion; metagenomics; photosynthates; plant growth; quantitative polymerase chain reaction; rhizosphere; soil biology; stable isotopes; wheat
Abstract:
... Rhizosphere microbial communities play essential roles in plant growth and health, with plant-derived carbon serving as the primary resource fueling the growth and activity of these root-associated communities. However, not all rhizosphere microbes are likely equivalent in their ability to metabolize root-derived carbon inputs, and far fewer studies have sought to identify the rhizosphere taxa, an ...
DOI:
10.1016/j.soilbio.2022.108577

7. Invasive species impacts on sub-Antarctic Collembola support the Antarctic climate-diversity-invasion hypothesis

Author:
Steven L. Chown; Dana M. Bergstrom; Melissa Houghton; Kate Kiefer; Aleks Terauds; Rachel I. Leihy
Source:
Soil biology & biochemistry 2022 v.166 pp. 108579
ISSN:
0038-0717
Subject:
Cryptopygus; biochemistry; cecum; climate change; fauna; indigenous species; invasive species; plant communities; prediction; soil; soil biology; surveys; vegetation; Antarctic region
Abstract:
... The Antarctic climate-diversity-invasion hypothesis (ACDI) predicts that in Antarctic soil systems, climate change should lead to increases in the abundance and diversity of indigenous assemblages. Where biological invasions have occurred, however, invasive alien species should have negative effects on indigenous faunal assemblages. To assess these predictions, we provide the first systematic ecol ...
DOI:
10.1016/j.soilbio.2022.108579

8. Liquid scintillation counting can underestimate 14C-activity of 14CO2 trapped in NaOH

Author:
Elinor F. Boos; Jakob Magid; Sander Bruun; Niels O.G. Jørgensen
Source:
Soil biology & biochemistry 2022 v.166 pp. 108576
ISSN:
0038-0717
Subject:
biochemistry; carbon dioxide; liquids; mineralization; organic matter; soil biology
Abstract:
... Mineralization of organic matter in environmental samples is frequently quantified by trapping ¹⁴CO₂ released from the degradation of ¹⁴C-labelled compounds. However, when ¹⁴CO₂ trapped in NaOH is quantified by liquid scintillation counting, ¹⁴C-activity can be gradually lost from the scintillation vials. When combining different molarities and volumes of NaOH and five commercial scintillation coc ...
DOI:
10.1016/j.soilbio.2022.108576

9. Nitrogen deposition stimulates decomposition via changes in the structure and function of litter food webs

Author:
Rui Yin; Qun Liu; Shanyi Tian; Anton Potapov; Biao Zhu; Kaijun Yang; Zhiji Li; Liyan Zhuang; Bo Tan; Li Zhang; Zhengfeng Xu; Paul Kardol; Martin Schädler; Nico Eisenhauer
Source:
Soil biology & biochemistry 2022 v.166 pp. 108522
ISSN:
0038-0717
Subject:
biochemistry; biodiversity; detritivores; equations; fauna; leaves; nitrogen; omnivores; soil biology; tropical forests; China
Abstract:
... Nitrogen (N) deposition poses a threat to terrestrial biodiversity and ecosystem functioning globally. However, little is known concerning how the structure and function of litter fauna communities will respond in this context. Here, a gradient of N deposition (0, 20, and 40 kg N ha⁻¹ yr⁻¹) was simulated in a subtropical forest of southwestern China, to assess the potential effects of increased N ...
DOI:
10.1016/j.soilbio.2021.108522

10. Phenology-dependent root bacteria enhance yield of Brassica napus

Author:
Steven D. Mamet; Bobbi L. Helgason; Eric G. Lamb; Annaliza McGillivray; Kevin G. Stanley; Stephen J. Robinson; Syed Umair Aziz; Sally Vail; Steven D. Siciliano
Source:
Soil biology & biochemistry 2022 v.166 pp. 108468
ISSN:
0038-0717
Subject:
Brassica napus; bacterial communities; biochemistry; climate; data collection; flowering; leaf development; microbiome; oilseed crops; phenology; phylogeny; roots; seed development; seed yield; soil biology
Abstract:
... The plant root microbiome can enhance yield in crops, but whether this effect is due to one yield-promoting bacterial community consisting of key taxa, or multiple configurations of taxa with different traits is unclear. A changing climate and the need to reduce carbon-intensive agricultural inputs has spurred breeding programs to explore holobiont approaches to optimizing crop yields. Here we use ...
DOI:
10.1016/j.soilbio.2021.108468

11. Polar soils exhibit distinct patterns in microbial diversity and dominant phylotypes

Author:
Mukan Ji; Weidong Kong; Hongzeng Jia; Manuel Delgado-Baquerizo; Tianqi Zhou; Xiaodong Liu; Belinda C. Ferrari; Lucie Malard; Chao Liang; Kai Xue; Thulani P. Makhalanyane; Yong-Guan Zhu; Yanfen Wang; David A. Pearce; Don Cowan
Source:
Soil biology & biochemistry 2022 v.166 pp. 108550
ISSN:
0038-0717
Subject:
biochemistry; community structure; geographical distribution; phylotype; soil biology; soil microorganisms; soil pH; summer; temperature; Antarctic region; Arctic region; China
Abstract:
... The polar regions, comprising the Antarctic, Arctic and Tibetan Plateau, represent the most extreme environments on Earth. Soils across the polar regions harbor diverse microorganisms, which dominate the biogeochemical cycling. However, polar soil microbial diversity is largely underrepresented, and has not been directly compared with the non-polar regions at a global scale, which hinders our unde ...
DOI:
10.1016/j.soilbio.2022.108550

12. Seasonality drives microbiome composition and nitrogen cycling in soil below biocrusts

Author:
Clayton J. Nevins; Patrick W. Inglett; Catherine L. Reardon; Sarah L. Strauss
Source:
Soil biology & biochemistry 2022 v.166 pp. 108551
ISSN:
0038-0717
Subject:
Citrus; agroecosystems; ammonia; biological soil crusts; dry season; eutrophication; fruit set; fungi; genes; microbial biomass; microbiome; nitrification; nitrogen; orchards; oxidation; rhizosphere; sandy soils; soil quality; soil water; soil water content; spring; water content; winter; Florida
Abstract:
... Biological soil crusts (biocrusts) recently discovered in agroecosystems have the potential to enrich soil moisture and nitrogen (N) concentrations and structure the subsurface microbiome. In citrus agroecosystems, year-round N availability is vital for production, with vegetative flushes in the spring and fall and fruit development in the fall and winter. Due to the N demand and natural formation ...
Handle:
10113/7629670
DOI:
10.1016/j.soilbio.2022.108551
CHORUS:
10.1016/j.soilbio.2022.108551

13. Soil pH influences the structure of virus communities at local and global scales

Author:
Sungeun Lee; Jackson W. Sorensen; Robin L. Walker; Joanne B. Emerson; Graeme W. Nicol; Christina Hazard
Source:
Soil biology & biochemistry 2022 v.166 pp. 108569
ISSN:
0038-0717
Subject:
biochemistry; community structure; microbial communities; soil biology; soil pH; virion; viruses
Abstract:
... The influence of biotic and abiotic factors on viral communities across environmental gradients in soil is relatively unknown. While soil pH strongly influences microbial community structure, it is unclear whether there is a similar influence on soil viruses. In this study, prokaryotic and viral communities were characterized in soils from a long-term pH-manipulated soil gradient (pH 4.5 and 7.5), ...
DOI:
10.1016/j.soilbio.2022.108569

14. Soil pore architecture and rhizosphere legacy define N2O production in root detritusphere

Author:
Kyungmin Kim; Jenie Gil; Nathaniel E. Ostrom; Hasand Gandhi; Maxwell S. Oerther; Yakov Kuzyakov; Andrey K. Guber; Alexandra N. Kravchenko
Source:
Soil biology & biochemistry 2022 v.166 pp. 108565
ISSN:
0038-0717
Subject:
Panicum virgatum; chitinase; energy crops; microbial activity; nitrous oxide production; rhizosphere; soil biology; soil pore system; soil water
Abstract:
... Root detritusphere is one of the most important sources of N₂O, however, understanding of how N₂O emission from the detritusphere is influenced by soil properties remains elusive. Here, we evaluated the effects of pore architecture and soil moisture on N₂O emission during the decomposition of in-situ grown roots of switchgrass, an important bioenergy crop. We combined dual isotope labeling (¹⁵C an ...
DOI:
10.1016/j.soilbio.2022.108565

15. Strong conditionality in plant-fungal community assembly after soil inoculation in post-agricultural grasslands

Author:
Willem-Jan Emsens; Maartje de Weyer; Ivette Fuentes; Yvonne Liczner; Rudy van Diggelen; Erik Verbruggen
Source:
Soil biology & biochemistry 2022 v.166 pp. 108580
ISSN:
0038-0717
Subject:
Glomeraceae; Helotiaceae; biochemistry; ecosystems; fungi; grasses; grasslands; hay; prokaryotic cells; soil; soil biology; soil inoculation
Abstract:
... Soil inoculation from plant species-rich into species-poor grasslands may enable the establishment of self-facilitating networks between microbes and vegetation, thereby steering ecosystem development. We conducted a three-year experiment that covered a wide range of post-agricultural grasslands to determine how succession is affected by the interactive effects of edaphic properties, grass layer r ...
DOI:
10.1016/j.soilbio.2022.108580

16. Surviving trees and deadwood moderate changes in soil fungal communities and associated functioning after natural forest disturbance and salvage logging

Author:
Mathias Mayer; Christoph Rosinger; Markus Gorfer; Harald Berger; Evi Deltedesco; Claus Bässler; Jörg Müller; Linda Seifert; Boris Rewald; Douglas L. Godbold
Source:
Soil biology & biochemistry 2022 v.166 pp. 108558
ISSN:
0038-0717
Subject:
Picea abies; bark beetles; dead wood; ectomycorrhizae; enzymes; ergosterol; forest damage; fungal biomass; saprotrophs; soil organic matter; trees; windthrow
Abstract:
... Temperate forests are increasingly subject to natural disturbance by stand replacing windthrows or bark-beetle attacks. Forests are commonly salvage logged after disturbance, whereby substantial parts of biological legacies, such as surviving trees and deadwood, are removed. Despite increasing concerns about the ecological consequences of salvage logging operations, our knowledge on the effects on ...
DOI:
10.1016/j.soilbio.2022.108558

17. Tree decline and mortality following pathogen invasion alters the diversity, composition and network structure of the soil microbiome

Author:
Lorena Gómez-Aparicio; Jara Domínguez-Begines; Elena Villa-Sanabria; Luis V. García; A. Jesús Muñoz-Pajares
Source:
Soil biology & biochemistry 2022 v.166 pp. 108560
ISSN:
0038-0717
Subject:
Phytophthora cinnamomi; Proteobacteria; Quercus suber; biochemistry; decline; disease control; ecological function; forests; mortality; pathogens; phylogeny; plant growth; soil; soil biology; soil fungi; topology; tree health; trees
Abstract:
... The loss of tree health is a global concern with many unknown cascading impacts on the diversity and function of forest ecosystems. Specifically, it is uncertain how the process of tree decline and mortality driven by exotic pathogens might alter the soil microbiome. Here we combined high-throughput sequencing, neighborhood models, and network analysis to explore the impacts of the decline of a Me ...
DOI:
10.1016/j.soilbio.2022.108560

18. When microclimates meet soil microbes: Temperature controls soil microbial diversity along an elevational gradient in subtropical forests

Author:
Luwen Ma; Lan Liu; Yaoshun Lu; Lin Chen; Zhaochen Zhang; Hongwei Zhang; Xiaoran Wang; Li Shu; Qingpei Yang; Qingni Song; Qiaohua Peng; Zeping Yu; Jian Zhang
Source:
Soil biology & biochemistry 2022 v.166 pp. 108566
ISSN:
0038-0717
Subject:
altitude; biochemistry; community structure; fungi; microbial communities; microclimate; nitrogen content; phylogeny; soil bacteria; soil biology; soil pH; soil temperature; species diversity
Abstract:
... Climatic variability along elevational gradients affects biodiversity and produces a natural range of conditions for realistic experiments. Soil biodiversity is expected to respond to the general climatic conditions, as well as microclimatic effects. With the Illumina MiSeq high-throughput sequencing technique, we systematically examined the taxonomic and phylogenetic diversity of soil bacteria an ...
DOI:
10.1016/j.soilbio.2022.108566

19. A flexible selection tool for the inclusion of soil biology methods in the assessment of soil multifunctionality

Author:
Marie J. Zwetsloot; Giulia Bongiorno; Janna M. Barel; D. Paolo di Lonardo; Rachel E. Creamer
Source:
Soil biology & biochemistry 2022 v.166 pp. 108514
ISSN:
0038-0717
Subject:
biochemistry; decision making; information systems; soil; soil biota; surveys
Abstract:
... Soil biota contribute to the delivery of multiple soil functions. However, soil biological methods are highly underrepresented in the assessment of soil functionality in agricultural production systems. Here we present a flexible tool to support decision-making during the selection process of soil biological methods for monitoring soil functions. This tool is based on a structured and conceptual f ...
DOI:
10.1016/j.soilbio.2021.108514

20. The life of soils: Integrating the who and how of multifunctionality

Author:
R.E. Creamer; J.M. Barel; G. Bongiorno; M.J. Zwetsloot
Source:
Soil biology & biochemistry 2022 v.166 pp. 108561
ISSN:
0038-0717
Subject:
biochemistry; carbon; climate; data collection; indicator species; land management; pests; soil; soil biota; soil quality
Abstract:
... Capturing the complexity of soil life for soil quality assessments is one of the most challenging paradoxes of contemporary soil science. Soil biota perform a plethora of processes that are fundamental to soil quality. As the concept of soil quality developed, so have the attempts to integrate soil biological measurements into monitoring schemes from field to regional scale. To date, however, soil ...
DOI:
10.1016/j.soilbio.2022.108561