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- Author:
- Juwattanasomran, Ruangchai; Somta, Prakit; Chankaew, Sompong; Shimizu, Takehiko; Wongpornchai, Sugunya; Kaga, Akito; Srinives, Peerasak
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 533-541
- ISSN:
- 0040-5752
- Subject:
- Glycine max; Oryza sativa; aldehyde dehydrogenase; alleles; amino acid substitution; aspartic acid; chromosome mapping; marker-assisted selection; odors; quantitative trait loci; sequence analysis; single nucleotide polymorphism; soybeans; vegetables
- Abstract:
- ... Fragrance in soybean is due to the presence of 2-acetyl-1-pyrroline (2AP). BADH2 gene coding for betaine aldehyde dehydrogenase has been identified as the candidate gene responsible for fragrance in rice (Oryza sativa L.). In this study, using the RIL population derived from fragrant soybean cultivar “Kaori” and non-fragrant soybean cultivar “Chiang Mai 60” (CM60), STS markers designed from BADH2 ...
- DOI:
- 10.1007/s00122-010-1467-6
- PubMed:
- 21046066
-
http://dx.doi.org/10.1007/s00122-010-1467-6
- Author:
- An, Song-Ji; Pandeya, Devendra; Park, Soung-Woo; Li, Jinjie; Kwon, Jin-Kyung; Koeda, Sota; Hosokawa, Munetaka; Paek, Nam-Chon; Choi, Doil; Kang, Byoung-Cheorl
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 459-470
- ISSN:
- 0040-5752
- Subject:
- Capsicum chinense; cell death; chlorophyll; chromosome mapping; chromosomes; fatty acid composition; gene expression regulation; leaves; linoleic acid; linolenic acid; mutants; pepper; phenotype; plant response; reactive oxygen species; recessive genes; tomatoes
- Abstract:
- ... A temperature-sensitive mutant of Capsicum chinense, sy-2, shows a normal developmental phenotype when grown above 24°C. However, when grown at 20°C, sy-2 exhibits developmental defects, such as chlorophyll deficiency and shrunken leaves. To understand the underlying mechanism of this temperature-dependent response, phenotypic characterization and genetic analysis were performed. The results revea ...
- DOI:
- 10.1007/s00122-010-1460-0
- PubMed:
- 20886202
-
http://dx.doi.org/10.1007/s00122-010-1460-0
- Author:
- Finkers-Tomczak, Anna; Bakker, Erin; de Boer, Jan; van der Vossen, Edwin; Achenbach, Ute; Golas, Tomasz; Suryaningrat, Suwardi; Smant, Geert; Bakker, Jaap; Goverse, Aska
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 595-608
- ISSN:
- 0040-5752
- Subject:
- Globodera rostochiensis; Solanum tuberosum; amino acid transporters; bacterial artificial chromosomes; chromosome mapping; cyst nematodes; genes; haplotypes; introgression; loci; molecular cloning; potatoes; sequence analysis; transposons
- Abstract:
- ... The H1 locus confers resistance to the potato cyst nematode Globodera rostochiensis pathotypes 1 and 4. It is positioned at the distal end of chromosome V of the diploid Solanum tuberosum genotype SH83-92-488 (SH) on an introgression segment derived from S. tuberosum ssp. andigena. Markers from a high-resolution genetic map of the H1 locus (Bakker et al. in Theor Appl Genet 109:146-152, 2004) were ...
- DOI:
- 10.1007/s00122-010-1472-9
- PubMed:
- 21049265
- PubMed Central:
- PMC3026667
-
http://dx.doi.org/10.1007/s00122-010-1472-9
- Author:
- Tsukazaki, Hikaru; Yamashita, Ken-ichiro; Yaguchi, Shigenori; Yamashita, Koichiro; Hagihara, Takuya; Shigyo, Masayoshi; Kojima, Akio; Wako, Tadayuki
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 501-510
- ISSN:
- 0040-5752
- Subject:
- quantitative trait loci; Allium fistulosum; microsatellite repeats; chromosomes; Allium cepa; linkage groups; expressed sequence tags; chromosome mapping; bulbs; monosomics; onions; genetic markers
- Abstract:
- ... To determine the chromosomal location of bunching onion (Allium fistulosum L.) simple sequence repeats (SSRs) and bulb onion (A. cepa L.) expressed sequence tags (ESTs), we used a complete set of bunching onion-shallot monosomic addition lines and allotriploid bunching onion single alien deletion lines as testers. Of a total of 2,159 markers (1,198 bunching onion SSRs, 324 bulb onion EST-SSRs and ...
- DOI:
- 10.1007/s00122-010-1464-9
-
http://dx.doi.org/10.1007/s00122-010-1464-9
- Author:
- Wang, Dagang; Ma, Ying; Yang, Yongqing; Liu, Ning; Li, Chunyan; Song, Yingpei; Zhi, Haijian
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 555-565
- ISSN:
- 0040-5752
- Subject:
- Glycine max; Soybean mosaic virus; chromosome mapping; dominant genes; foliar diseases; inbred lines; inheritance (genetics); loci; marker-assisted selection; microsatellite repeats; selfing; sequence analysis; soybeans
- Abstract:
- ... Soybean mosaic virus (SMV) in soybean [Glycine max (L.) Merr.] is a destructive foliar disease in soybean-producing countries worldwide. In this study, F₂, F₂:₃, and F₇:₁₁ recombinant inbred lines populations derived from Kefeng No.1 × Nannong 1138-2 were used to study inheritance and linkage mapping of the SMV strain SC8 resistance gene in Kefeng No.1. Results indicated that a single dominant gen ...
- DOI:
- 10.1007/s00122-010-1469-4
-
http://dx.doi.org/10.1007/s00122-010-1469-4
- Author:
- Simons, Kristin; Abate, Zewdie; Chao, Shiaoman; Zhang, Wenjun; Rouse, Matt; Jin, Yue; Elias, Elias; Dubcovsky, Jorge
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 649
- ISSN:
- 0040-5752
- Subject:
- Brachypodium; Puccinia graminis; Triticum turgidum; chromosome mapping; chromosomes; clones; disease resistance; durability; durum wheat; expressed sequence tags; genes; genetic markers; races; rice; stem rust; tetraploidy; Uganda
- Abstract:
- ... Wheat stem rust caused by Puccinia graminis f. sp. tritici, can cause significant yield losses. To combat the disease, breeders have deployed resistance genes both individually and in combinations to increase resistance durability. A new race, TTKSK (Ug99), identified in Uganda in 1999 is virulent on most of the resistance genes currently deployed, and is rapidly spreading to other regions of the ...
- Handle:
- 10113/54383
- DOI:
- 10.1007/s00122-010-1444-0
- PubMed:
- 20857083
- PubMed Central:
- PMC4755715
-
http://dx.doi.org/10.1007/s00122-010-1444-0
- Author:
- Admassu, Belayneh; Perovic, Dragan; Friedt, Wolfgang; Ordon, Frank
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 643-648
- ISSN:
- 0040-5752
- Subject:
- Puccinia graminis; Triticum aestivum; breeding lines; chromosome mapping; cultivars; genes; genetic markers; loci; microsatellite repeats; races; stem rust; virulence; wheat
- Abstract:
- ... Puccinia graminis f. sp. tritici, the causative agent of stem rust in wheat, is known for its high virulence variability and ability to evolve new virulence to resistance genes. Thus, pyramiding of several resistance genes in a single line is the best strategy for a sustainable control of wheat stem rust. Sr13 is one of the few resistance genes that are effective against wide ranging P. graminis f ...
- DOI:
- 10.1007/s00122-010-1433-3
- PubMed:
- 20838760
-
http://dx.doi.org/10.1007/s00122-010-1433-3
- Author:
- Mason, Annaliese S.; Nelson, Matthew N.; Castello, Marie-Claire; Yan, Guijun; Cowling, Wallace A.
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 543-553
- ISSN:
- 0040-5752
- Subject:
- Brassica napus; alleles; allopolyploidy; canola; genotype; homologous recombination; hybrids; loci; microsatellite repeats; progeny
- Abstract:
- ... We investigated the influence of genotype on homoeologous and homologous recombination frequency in eight different Brassica napus (AACnCn) × B. carinata (BBCcCc) interspecific hybrids (genome composition CnCcAB). Meiotic recombination events were assessed through microsatellite marker analysis of 67 unreduced microspore-derived progeny. Thirty-four microsatellite markers amplified 83 A-, B-, Cn- ...
- DOI:
- 10.1007/s00122-010-1468-5
-
http://dx.doi.org/10.1007/s00122-010-1468-5
- Author:
- Pearson, Allison; Cogan, Noel O. I.; Baillie, Rebecca C.; Hand, Melanie L.; Bandaranayake, Champa K.; Erb, Stacey; Wang, Junping; Kearney, Gavin A.; Gendall, Anthony R.; Smith, Kevin F.; Forster, John W.
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 609-622
- ISSN:
- 0040-5752
- Subject:
- Lolium perenne; abiotic stress; chromosome mapping; diploidy; flood irrigation; flooded conditions; genetic markers; genotype; linkage groups; outbreeding; oxygen; quantitative trait loci; root systems; single nucleotide polymorphism; winter
- Abstract:
- ... Perennial ryegrass is a globally cultivated obligate outbreeding diploid species (2n = 2x = 14) which is subjected to periods of waterlogging stress due to flood irrigation during winter and the lead-up to summer. Reduction of oxygen supply to root systems due to waterlogging produces consequent deleterious effects on plant performance. Framework genetic maps for a large-scale genetic mapping fami ...
- DOI:
- 10.1007/s00122-010-1473-8
- PubMed:
- 20981402
-
http://dx.doi.org/10.1007/s00122-010-1473-8
- Author:
- Sagredo, B.; Lorenzen, J.; Casper, H.; Lafta, A.
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 471-478
- ISSN:
- 0040-5752
- Subject:
- Leptinotarsa decemlineata; Solanum chacoense; amplified fragment length polymorphism; chemical structure; chromosomes; gas chromatography; genes; genetic background; hydroxylation; ions; leaves; mass spectrometry; microsatellite repeats; molecular weight; nuclear magnetic resonance spectroscopy; potatoes; progeny; solanidine; tetraploidy; tubers
- Abstract:
- ... The potato genotype ND4382-19 has Solanum chacoense Bitt. in its genetic background. Foliar alkaloid analysis of it and its progeny ND5873 (ND4382-19 × Chipeta) by gas chromatography-mass spectrometry (GC-MS) showed that, in addition to the expected alkaloids (solanidine, leptinidine, and acetyl-leptinidine), there was an aglycone of another rare alkaloid. Its molecular mass and some of the m/z fr ...
- DOI:
- 10.1007/s00122-010-1461-z
- PubMed:
- 20924746
-
http://dx.doi.org/10.1007/s00122-010-1461-z
- Author:
- Dadkhodaie, N. A.; Karaoglou, H.; Wellings, C. R.; Park, R. F.
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 479-487
- ISSN:
- 0040-5752
- Subject:
- Puccinia striiformis; Triticum turgidum subsp. dicoccoides; chromosomes; gene segregation; genes; genotype; leaf rust; microsatellite repeats; wheat
- Abstract:
- ... The rust resistance genes Lr53 and Yr35, transferred to common wheat from Triticum dicoccoides, were reported previously to be completely linked on chromosome 6B. Four F ₃ families were produced from a cross between a line carrying Lr53 and Yr35 (98M71) and the leaf rust and stripe rust susceptible genotype Avocet “S” and were rust tested using Puccinina triticina pathotype 53-1,(6),(7),10,11 and ...
- DOI:
- 10.1007/s00122-010-1462-y
- PubMed:
- 20924745
-
http://dx.doi.org/10.1007/s00122-010-1462-y
- Author:
- Xu, Yu; Li, He-Nan; Li, Guang-Jun; Wang, Xia; Cheng, Li-Guo; Zhang, Yuan-Ming
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 581-594
- ISSN:
- 0040-5752
- Subject:
- Glycine max; environmental impact; genes; heritability; quantitative trait loci; reciprocal crosses; soybeans
- Abstract:
- ... Seed size traits in soybean--length, width and thickness--and their corresponding ratios--length-to-width, length-to-thickness and width-to-thickness--play a crucial role in determining seed appearance, quality and yield. In this study, an attempt was made to detect quantitative trait loci (QTL) for the aforementioned seed size traits in F₂:₃, F₂:₄ and F₂:₅ populations from the direct and reciproc ...
- DOI:
- 10.1007/s00122-010-1471-x
- PubMed:
- 20981403
-
http://dx.doi.org/10.1007/s00122-010-1471-x
- Author:
- Comadran, Jordi; Ramsay, Luke; MacKenzie, Katrin; Hayes, Patrick; Close, Timothy J.; Muehlbauer, Gary; Stein, Nils; Waugh, Robbie
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 523-531
- ISSN:
- 0040-5752
- Subject:
- barley; centromeres; gene frequency; genetic variation; genome; germplasm; linkage disequilibrium; loci; molecular cloning; plant breeding; single nucleotide polymorphism
- Abstract:
- ... We carried out a genome-wide analysis of polymorphism (4,596 SNP loci across 190 elite cultivated accessions) chosen to represent the available genetic variation in current elite North West European and North American barley germplasm. Population sub-structure, patterns of diversity and linkage disequilibrium varied considerably across the seven barley chromosomes. Gene-rich and rarely recombining ...
- DOI:
- 10.1007/s00122-010-1466-7
- PubMed:
- 21076812
- PubMed Central:
- PMC3026706
-
http://dx.doi.org/10.1007/s00122-010-1466-7
- Author:
- Newell, M. A.; Cook, D.; Tinker, N. A.; Jannink, J.-L.
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 623-632
- ISSN:
- 0040-5752
- Subject:
- Avena sativa; cluster analysis; linkage disequilibrium; oats; population structure; principal component analysis
- Abstract:
- ... The level of population structure and the extent of linkage disequilibrium (LD) can have large impacts on the power, resolution, and design of genome-wide association studies (GWAS) in plants. Until recently, the topics of LD and population structure have not been explored in oat due to the lack of a high-throughput, high-density marker system. The objectives of this research were to survey the le ...
- DOI:
- 10.1007/s00122-010-1474-7
- PubMed:
- 21042793
-
http://dx.doi.org/10.1007/s00122-010-1474-7
- Author:
- Blair, Matthew W.; Astudillo, Carohna; Rengifo, Judith; Beebe, Steve E.; Graham, Robin
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 511-521
- ISSN:
- 0040-5752
- Subject:
- Phaseolus vulgaris; analytical methods; beans; chromosome mapping; cream; crops; crossing; genotype; grains; inbred lines; iron; linkage groups; loci; marker-assisted selection; microsatellite repeats; minerals; quantitative trait loci; random amplified polymorphic DNA technique; roots; seeds; sulfur amino acids; vitamins; zinc; Andes region
- Abstract:
- ... Legumes provide essential micronutrients that are found only in low amounts in the cereals or root crops. An ongoing project at CIAT has shown that the legume common bean is variable in the amount of seed minerals (iron, zinc, and other elements), vitamins, and sulfur amino acids that they contain and that these traits are likely to be inherited quantitatively. In this study we analyzed iron and z ...
- DOI:
- 10.1007/s00122-010-1465-8
- PubMed:
- 21113704
-
http://dx.doi.org/10.1007/s00122-010-1465-8
- Author:
- Spiller, Monika; Linde, Marcus; Hibrand-Saint Oyant, Laurence; Tsai, Ching-Jung; Byrne, David H.; Smulders, Marinus J. M.; Foucher, Fabrice; Debener, Thomas
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 489-500
- ISSN:
- 0040-5752
- Subject:
- Rosa; chromosome mapping; diploidy; expressed sequence tags; genetic markers; linkage groups; loci; marker-assisted selection; odors; population size; quantitative trait loci
- Abstract:
- ... We have constructed the first integrated consensus map (ICM) for rose, based on the information of four diploid populations and more than 1,000 initial markers. The single population maps are linked via 59 bridge markers, on average 8.4 per linkage group (LG). The integrated map comprises 597 markers, 206 of which are sequence-based, distributed over a length of 530 cM on seven LGs. By using a lar ...
- DOI:
- 10.1007/s00122-010-1463-x
- PubMed:
- 20936462
-
http://dx.doi.org/10.1007/s00122-010-1463-x
- Author:
- Wichmann, Fabienne; Asp, Torben; Widmer, Franco; Kölliker, Roland
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 567-579
- ISSN:
- 0040-5752
- Subject:
- transcriptomics; wilting; marker-assisted selection; bacterial wilt; complementary DNA; microarray technology; Lolium perenne; expressed sequence tags; transcription (genetics); gene expression; forage grasses; resistance mechanisms; Xanthomonas translucens; genotype; transcriptome; gene expression regulation; Lolium multiflorum
- Abstract:
- ... Xanthomonas translucens pv. graminis (Xtg) causes bacterial wilt, a severe disease of forage grasses such as Italian ryegrass (Lolium multiflorum Lam.). In order to gain a more detailed understanding of the genetic control of resistance mechanisms and to provide prerequisites for marker assisted selection, the partial transcriptomes of two Italian ryegrass genotypes, one resistant and one suscepti ...
- DOI:
- 10.1007/s00122-010-1470-y
- PubMed:
- 20976589
-
http://dx.doi.org/10.1007/s00122-010-1470-y
- Author:
- Ohnishi, Shizen; Funatsuki, Hideyuki; Kasai, Atsushi; Kurauchi, Tasuku; Yamaguchi, Naoya; Takeuchi, Toru; Yamazaki, Hiroyuki; Kurosaki, Hideki; Shirai, Shigehisa; Miyoshi, Tomoaki; Horita, Harukuni; Senda, Mineo
- Source:
- Theoretical and applied genetics 2011 v.122 no.3 pp. 633-642
- ISSN:
- 0040-5752
- Subject:
- quantitative trait loci; cultivars; RNA interference; Glycine max; marker-assisted selection; phenotype; naringenin-chalcone synthase; discoloration; pseudogenes; testa; soybeans; genotype; inbred lines; temperature; genetic markers
- Abstract:
- ... In yellow soybean, seed coat pigmentation is inhibited by post-transcriptional gene silencing (PTGS) of chalcone synthase (CHS) genes. A CHS cluster named GmIRCHS (Glycine max inverted-repeat CHS pseudogene) is suggested to cause PTGS in yellow-hilum cultivars. Cold-induced seed coat discoloration (CD), a commercially serious deterioration of seed appearance, is caused by an inhibition of this PTG ...
- DOI:
- 10.1007/s00122-010-1475-6
- PubMed:
- 20981401
-
http://dx.doi.org/10.1007/s00122-010-1475-6