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You searched for: Journal Tree genetics & genomes Remove constraint Journal: Tree genetics & genomes Publication Year 2017 Remove constraint Publication Year: 2017 Source 2017 v.13 no.3 Remove constraint Source: 2017 v.13 no.3 Text Availability Citation in PubAg Remove constraint Text Availability: Citation in PubAg
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1. Association genetics of growth and adaptive traits in loblolly pine (Pinus taeda L.) using whole-exome-discovered polymorphisms

Author:
Lu, Mengmeng; Krutovsky, Konstantin V.; Nelson, C. Dana; West, Jason B.; Reilly, Nathalie A.; Loopstra, Carol A.
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 57
ISSN:
1614-2942
Subject:
growth traits; sequence analysis; correlation; marker-assisted selection; nitrogen content; phenotype; isotopes; water use efficiency; epistasis; leaf area; heterozygosity; forest genetics; breeding programs; carbon; single nucleotide polymorphism; Pinus taeda; genetic variance; exons; quantitative traits
Abstract:
... In the USA, forest genetics research began over 100 years ago and loblolly pine breeding programs were established in the 1950s. However, the genetics underlying complex traits of loblolly pine remains to be discovered. To address this, adaptive and growth traits were measured and analyzed in a clonally tested loblolly pine (Pinus taeda L.) population. Over 2.8 million single nucleotide polymorphi ...
DOI:
10.1007/s11295-017-1140-1
CHORUS:
10.1007/s11295-017-1140-1

2. Comparison and confirmation of SNP-bud burst associations in European beech populations in Germany

Author:
Müller, Markus; Seifert, Sarah; Finkeldey, Reiner
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 59
ISSN:
1614-2942
Subject:
Fagus sylvatica subsp. sylvatica; climate change; forest trees; genes; genotyping; phenotypic variation; single nucleotide polymorphism; spring; temperature; Central European region; Germany
Abstract:
... European beech (Fagus sylvatica L.) is one of the most important forest tree species in Central Europe. Climate change scenarios predict an increase in annual mean temperatures that may cause earlier bud burst in spring, potentially leading to an increased late frost-risk. Despite the ecologic and economic importance of beech, knowledge about the molecular basis of bud burst is still scarce in thi ...
DOI:
10.1007/s11295-017-1145-9

3. Complex phylogeographic patterns indicate Central American origin of two widespread Mesoamerican Quercus (Fagaceae) species

Author:
Rodríguez-Correa, Hernando; Oyama, Ken; Quesada, Mauricio; Fuchs, Eric J.; Quezada, Maura; Ferrufino, Lilian; Valencia-Ávalos, Susana; Cascante-Marín, Alfredo; González-Rodríguez, Antonio
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 62
ISSN:
1614-2942
Subject:
Neotropics; Quercus; chloroplast DNA; genetic variation; haplotypes; highlands; microsatellite repeats; mountains; phylogeography; Mexico
Abstract:
... The northern Neotropical region is characterized by a heterogeneous geological and climatic history. Recent studies have shown contrasting patterns regarding the role of geographic elements as barriers that could have determined phylogeographic structure in various species. Recently, the phylogeography and biogeography of Quercus species have been studied intensively, and the patterns observed so ...
DOI:
10.1007/s11295-017-1147-7

4. De novo assembly of transcriptome from Rhododendron latoucheae Franch. using Illumina sequencing and development of new EST-SSR markers for genetic diversity analysis in Rhododendron

Author:
Xing, Wen; Liao, Juyang; Cai, Mengying; Xia, Qingfang; Liu, Yan; Zeng, Wen; Jin, Xiaoling
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 53
ISSN:
1614-2942
Subject:
Rhododendron; alleles; altitude; data collection; databases; flowers; genetic markers; genetic relationships; genetic variation; genomics; geographical distribution; loci; microsatellite repeats; phylogeny; tandem repeat sequences; transcriptome; unigenes
Abstract:
... Rhododendron is universally known for its showy flower, and Rhododendron latoucheae Franch. is an adaptable and wide altitude range species of Rhododendron, with beautiful fragrant flowers and medicinal functions. However, genetic studies of Rhododendron have been hindered by limited genomic resources and genetic markers. In this study, a large dataset composed of 80,660 unigenes derived from the ...
DOI:
10.1007/s11295-017-1135-y

5. Field-based artificial crossings indicate partial compatibility of reciprocal crosses between Pinus sylvestris and Pinus mugo and unexpected chloroplast DNA inheritance

Author:
Kormutak, Andrej; Galgoci, Martin; Manka, Peter; Koubova, Martina; Jopcik, Martin; Sukenikova, Denisa; Bolecek, Peter; Gőmőry, Dusan
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 68
ISSN:
1614-2942
Subject:
Pinus mugo; Pinus sylvestris; chloroplast DNA; gene flow; genetic markers; hybrids; inheritance (genetics); microsatellite repeats; nuclear genome; pollination; reciprocal crosses; seeds
Abstract:
... Crossability relationships between Scots pine (Pinus sylvestris L.) and mountain dwarf pine (Pinus mugo Turra) was studied, using artificial pollination approach. Partial compatibility of the reciprocal crossings of these species was proved experimentally, validating the idea of a spontaneous formation of their hybrid swarms under natural conditions. The hybrids were validated using organellar DNA ...
DOI:
10.1007/s11295-017-1152-x

6. Genetic characterization and diversity among avocado (Persea americana Mill.) genotypes from INIA-CENIAP, Venezuela

Author:
Ferrer Pereira, H.; Perez Almeida, I.; Raymúndez Urrutia, M.
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 56
ISSN:
1614-2942
Subject:
DNA; Persea americana; alleles; avocados; chromosome mapping; cultivars; gels; gene frequency; genetic analysis; genetic variation; germplasm; heterozygosity; horticulture; hybrids; loci; microsatellite repeats; polyacrylamide; polymerase chain reaction; species identification; Venezuela
Abstract:
... Studies on Persea americana have been addressed in different ways with biochemical and molecular techniques. Microsatellites are able to detect multiple alleles for particular loci and are therefore a useful tool to study genealogical relationships, population structures and genetic mapping. Ninety-six samples from 49 cultivars including three horticultural groups and hybrids were collected from t ...
DOI:
10.1007/s11295-017-1128-x

7. Genetic control of growth and shoot phenology in juvenile loblolly pine (Pinus taeda L.) clonal trials

Author:
Quesada, Tania; Parisi, Liliana M.; Huber, Dudley A.; Gezan, Salvador A.; Martin, Timothy A.; Davis, John M.; Peter, Gary F.
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 65
ISSN:
1614-2942
Subject:
Pinus taeda; additive effect; coastal plains; crossing; early selection; genetic correlation; genetic improvement; genotype; growth traits; heritability; juveniles; parents; phenology; progeny; seedlings; Florida; Georgia
Abstract:
... Southern pine genetic improvement programs have selected for faster early growth which has often increased yields over unimproved material, and some of this improvement is likely attributable to variation in growth phenology among genotypes. However, the genetics of shoot growth phenology traits are not well characterized. Loblolly pine cuttings and seedlings from parents originating in the Atlant ...
DOI:
10.1007/s11295-017-1143-y
CHORUS:
10.1007/s11295-017-1143-y

8. Genetic differentiation between clone collections and natural populations of European black poplar (Populus nigra L.) in turkey

Author:
Ciftci, Asiye; Karatay, Hüseyin; Kücükosmanoğlu, Filiz; Karahan, Alptekin; Kaya, Zeki
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 69
ISSN:
1614-2942
Subject:
Populus nigra; breeding; clones; ecosystems; ex situ conservation; genetic markers; genetic variation; genotyping; heterozygosity; microsatellite repeats; plantations; pollution; rivers; trees; Turkey (country)
Abstract:
... The European black poplar (Populus nigra L.) is an ecologically and economically important tree species for Turkey. The important and major genetic resources of species for future breeding and ex situ conservation purposes have been archived in a clone bank in Ankara by selecting clones from natural populations and old plantations throughout Turkey. There is no study to date assessing genetic comp ...
DOI:
10.1007/s11295-017-1154-8

9. Genetic diversity and population structure of pummelo (Citrus maxima) germplasm in China

Author:
Yu, Huiwen; Yang, Xiaoming; Guo, Fei; Jiang, Xiaolin; Deng, Xiuxin; Xu, Qiang
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 58
ISSN:
1614-2942
Subject:
Citrus maxima; breeding programs; genetic variation; genome-wide association study; germplasm; heterozygosity; microsatellite repeats; population structure; pummelos; trees; China
Abstract:
... Pummelo (Citrus maxima) is one of the basic species of Citrus. It has been cultivated for about 4000 years in China, and therefore, there are abundant germplasm during the long time of culture. However, there is still a lack of a detailed study of the genetic characteristics of pummelo population. In this study, genetic diversity and population structure among 274 pummelo accessions collected in C ...
DOI:
10.1007/s11295-017-1133-0

10. Genetic structure of gall oak (Quercus infectoria) characterized by nuclear and chloroplast SSR markers

Author:
Mohammad-Panah, Negar; Shabanian, Naghi; Khadivi, Ali; Rahmani, Mohammad-Shafie; Emami, Arezoo
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 70
ISSN:
1614-2942
Subject:
Quercus infectoria; alleles; arithmetics; chloroplasts; cluster analysis; correlation; ex situ conservation; forests; genetic variation; germplasm; loci; microsatellite repeats; shrubs; variance; Iran
Abstract:
... Quercus infectoria, commonly known as gall oak, is a small shrub found in Iran. Unfortunately, it is subjected to genetic erosion, and so, its conservation and evaluation are desirable. Thus, in the current research, 16 microsatellite primer pairs (seven nuclear simple sequence repeats (nSSRs) and nine chloroplast simple sequence repeats (cpSSRs)) were used in an attempt to assess the genetic dive ...
DOI:
10.1007/s11295-017-1146-8

11. Genotype by environment interactions in forest tree breeding: review of methodology and perspectives on research and application

Author:
Li, Yongjun; Suontama, Mari; Burdon, Rowland D.; Dungey, Heidi S.
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 60
ISSN:
1614-2942
Subject:
Eucalyptus; Pinus; Pseudotsuga menziesii; analytical methods; breeding programs; environmental factors; forest trees; forests; genetic improvement; genetic variation; genomics; genotype; genotype-environment interaction; growth traits; heritability; models; tree breeding; wood properties
Abstract:
... Genotype by environment interaction (G×E) refers to the comparative performances of genotypes differing among environments, representing differences in genotype rankings or differences in the level of expression of genetic differences among environments. G×E can reduce heritability and overall genetic gain, unless breeding programmes are structured to address different categories of environments. ...
DOI:
10.1007/s11295-017-1144-x

12. Global gene expression pattern in a forest tree species, Tectona grandis (Linn. F.), under limited water supply

Author:
Tripathi, Abhinandan Mani; Yadav, Amrita; Saikia, Siddhartha Proteem; Roy, Sribash
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 66
ISSN:
1614-2942
Subject:
Tectona grandis; catechol oxidase; climate change; cytochrome P-450; forest growth; forest trees; gene expression; gene expression regulation; gene ontology; growth and development; laccase; methionine adenosyltransferase; microsatellite repeats; reforestation; stress response; unigenes; water supply
Abstract:
... Global climate change phenomena have led to drought-like situation in many parts of the world. This has major impact on forest growth and development. Among forest tree species, Tectona grandis, commonly known as Teak, is one of the important forest tree species. Limited water availability during early stage of Teak sapling establishment leads to failure in various reforestation programs. Here, we ...
DOI:
10.1007/s11295-017-1151-y

13. Physiological and transcriptional analysis reveals pathways involved in iron deficiency chlorosis in fragrant citrus

Author:
Jin, Long-Fei; Liu, Yong-Zhong; Du, Wei; Fu, Li-Na; Hussain, Syed Bilal; Peng, Shu-Ang
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 51
ISSN:
1614-2942
Subject:
Citrus junos; absorption; biosynthesis; calcareous soils; chlorophyll; chlorosis; crop production; gene expression regulation; genes; glutamyl-tRNA reductase; iron; leaves; nitrate reductase; nitrates; nitrogen; nitrogen metabolism; nutrient deficiencies; photosynthesis; potassium; stomatal conductance; transcription (genetics); zinc
Abstract:
... Iron (Fe) deficiency chlorosis is a yield-limiting problem in citrus production regions with calcareous soils. Physiological and transcriptional analyses of fragrant citrus (Citrus junos Sieb. ex Tanaka) leaves from Fe-sufficient (IS) and Fe-deficient (ID) plants were investigated in this study. The physiological results showed that Fe, potassium, and nitrogen levels decreased by 12, 15, and 41% i ...
DOI:
10.1007/s11295-017-1136-x

14. Pyramiding of male-sterile genes in Cryptomeria japonica D. Don with the aid of closely linked markers

Author:
Moriguchi, Yoshinari; Totsuka, Satoko; Iwai, Junji; Matsumoto, Asako; Ueno, Saneyoshi; Tsumura, Yoshihiko
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 61
ISSN:
1614-2942
Subject:
Cryptomeria japonica; crops; crossing; forest trees; genes; genetic markers; heterozygosity; loci; marker-assisted selection; parents; seedlings
Abstract:
... Gene pyramiding is a breeding method used to combine multiple useful genes. Although several genes have been pyramided in certain crops, gene pyramiding has not previously been applied to forest trees. In this study, we used the markers closely linked to the two male-sterile genes MS1 and MS2 for the effective development of individuals doubly heterozygous for these two genes. This is the first ex ...
DOI:
10.1007/s11295-017-1149-5

15. Quantitative trait loci controlling vegetative propagation traits mapped in European pear (Pyrus communis L.)

Author:
Knäbel, Mareike; Friend, Adam P.; Palmer, John W.; Diack, Robert; Gardiner, Susan E.; Tustin, Stuart; Schaffer, Robert; Foster, Toshi; Chagné, David
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 55
ISSN:
1614-2942
Subject:
Jersey; Pyrus communis; adventitious roots; females; genetic markers; hardwood cuttings; loci; males; marker-assisted selection; parents; pears; quantitative trait loci; rooting; rootstocks; vegetative propagation
Abstract:
... The ease of vegetative propagation by hardwood cuttings is a critical trait for consideration by breeders of woody perennial rootstocks. This is especially so for Pyrus, because most Pyrus rootstock are known to be difficult to propagate. This report presents progress on the identification of loci controlling rooting of hardwood cuttings in European pear (Pyrus communis L.). Quantitative trait loc ...
DOI:
10.1007/s11295-017-1141-0

16. Rangewide population differentiation and population substructure in Quercus rubra L.

Author:
Borkowski, Daniel S.; Hoban, Sean M.; Chatwin, Warren; Romero-Severson, Jeanne
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 67
ISSN:
1614-2942
Subject:
Bayesian theory; Quercus rubra; ancestry; biogeography; climatic factors; genes; genetic variation; genotyping; latitude; models; trees
Abstract:
... Genetic diversity and differentiation in Quercus rubra remains undescribed for most of the native range. Using 10 highly informative gSSR markers, we genotyped 23 populations (980 trees), from across the native range, at local and rangewide spatial scales. We used a hierarchical Bayesian method to generate population-specific F ₛₜ estimates. The posterior probabilities of 3 spatial and 19 climate ...
DOI:
10.1007/s11295-017-1148-6

17. Revisiting the provenance delineation of a widespread shrub, Frangula alnus—the role of spatial, temporal and environmental patterns

Author:
Mosner, Eva; Eimert, Klaus; Hüwe, Ulrike; Ziegenhagen, Birgit; Janßen, Alwin; Leyer, Ilona
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 63
ISSN:
1614-2942
Subject:
Frangula alnus; alleles; chloroplast DNA; climate change; environmental factors; gene flow; genetic markers; genetic variation; landscapes; microsatellite repeats; planting; provenance; shrubs; temperature; Germany
Abstract:
... Including population genetic aspects into the selection of planting material within the framework of conservation and restoration measures is of vital importance for the long-term persistence of populations. This is especially true facing climate change since genetic diversity and the spread of potentially beneficial alleles are important for the adaptability of populations. Therefore, knowledge a ...
DOI:
10.1007/s11295-017-1142-z

18. To what extent do wild apples in Kazakhstan retain their genetic integrity?

Author:
Omasheva, Madina Y.; Flachowsky, Henryk; Ryabushkina, Natalya A.; Pozharskiy, Alexandr S.; Galiakparov, Nurbol N.; Hanke, Magda-Viola
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 52
ISSN:
1614-2942
Subject:
Malus domestica; Malus sieversii; apples; center of origin; cultivars; extinction; gene flow; genetic analysis; genetic stability; genetic variation; grazing; habitats; heterozygosity; hybrids; microsatellite repeats; risk; urbanization; Kazakhstan
Abstract:
... Kazakhstan belongs to the center of origin of apple. Malus sieversii (Ledeb.) M. Roem., the ancestral progenitor of the cultivated apple is native to this region. Pressure on the natural habitats of this wild apple has been intensified due to agriculture, grazing, and urbanization in the last century. For decades, M. sieversii in Kazakhstan has been subjected to the “Red Book of the Kazakh SSR” an ...
DOI:
10.1007/s11295-017-1134-z

19. Transcriptome analysis of Ulmus pumila ‘Jinye’ responses to different shading involved in chlorophyll metabolism

Author:
Zhang, Shuang; Zuo, Lihui; Zhang, Jun; Chen, Panfei; Wang, Jinmao; Yang, Minsheng
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 64
ISSN:
1614-2942
Subject:
Ulmus pumila; carotenoids; chlorophyll; color; gene expression regulation; high-throughput nucleotide sequencing; leaves; mutation; ornamental plants; phenotype; photosynthesis; shade; transcriptomics; unigenes
Abstract:
... A variety of colorful mutations exist in nature. However, shade stress will affect the color of ornamental plants. Ulmus pumila ‘Jinye’ is a cultivated species of elm with a yellow leaf color, which will become green under shade stress. In this paper, ‘Jinye’ samples were treated with different degrees of shade by using shading net to investigate the mechanism of greening of the yellow leaves thro ...
DOI:
10.1007/s11295-017-1139-7

20. Variation in bean morphology and biochemical composition measured in different genetic groups of arabica coffee (Coffea arabica L.)

Author:
Tran, Hue T. M.; Vargas, Carlos Alberto Cordero; Slade Lee, L.; Furtado, Agnelo; Smyth, Heather; Henry, Robert
Source:
Tree genetics & genomes 2017 v.13 no.3 pp. 54
ISSN:
1614-2942
Subject:
Coffea arabica; Research and Education Center for Tropical Agriculture; beans; bulk density; caffeine; chemical composition; domestication; genetic background; geraniol; germplasm; self-pollination; trigonelline; volatile compounds; Costa Rica
Abstract:
... The narrow genetic base of commercial arabica resulting from intensive selection for quality during domestication and self-pollination has been well documented, raising the need for new diverse germplasm sources. Beans of 232 diverse arabica coffee accessions originating from 27 countries were harvested from the germplasm collection at CATIE, Costa Rica. Substantial variation was observed for bean ...
DOI:
10.1007/s11295-017-1138-8