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1. Genome-wide analysis of LTR-retrotransposon expression in leaves of Populus × canadensis water-deprived plants

Author:
Giordani, Tommaso; Cossu, Rosa Maria; Mascagni, Flavia; Marroni, Fabio; Morgante, Michele; Cavallini, Andrea; Natali, Lucia
Source:
Tree genetics & genomes 2016 v.12 no.4 pp. 75
ISSN:
1614-2942
Subject:
Populus canadensis; RNA; chromatin; drought; gene expression regulation; genes; high-throughput nucleotide sequencing; hybrids; leaves; methylation; retrotransposons; transcription (genetics); water deprivation
Abstract:
... Retrotransposons represent a major component of plant genomes; however, large-scale studies on their expression are rare. Massively parallel sequencing offers new analytical possibilities enabling a comprehensive study of retrotransposon RNA transcription. We evaluated the expression of long terminal repeat-retrotransposons in leaves of two sister hybrids Populus × canadensis (P. deltoides × P. ni ...
DOI:
10.1007/s11295-016-1036-5