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You searched for: Journal name Tree genetics & genomes Remove constraint Journal name: Tree genetics & genomes Subject apples Remove constraint Subject: apples Subject fruiting Remove constraint Subject: fruiting
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1. The transcriptomes of healthy and bitter pit-affected ‘Honeycrisp’ fruit reveal genes associated with disorder development and progression

Author:
Benjamin Orcheski; Dong Meng; Yang Bai; Zhangjun Fei; Lailiang Cheng
Source:
Tree genetics & genomes 2021 v.17 no.4 pp. 37
ISSN:
1614-2942
Subject:
Arabidopsis; RNA; abscission; apples; bitter pit; cultivars; data collection; fruiting; fruits; gene expression regulation; plant genetics; sequence analysis; transcriptome
Abstract:
... The high-value apple cultivar ‘Honeycrisp’ is prone to bitter pit, a physiological disorder characterized by the development of dark, sunken lesions on fruit particularly towards the calyx-end. Identifying the genetic basis of bitter pit is critical for mitigation of the disorder and development of bitter pit-free varieties. To this end, we performed an RNA sequencing experiment to compare the pee ...
DOI:
10.1007/s11295-021-01518-7

2. Genome-wide identification and expression analysis of the bZIP gene family in apple (Malus domestica)

Author:
Yuan-Yuan Li; Dong Meng; Mingjun Li; Lailiang Cheng
Source:
Tree genetics & genomes 2016 v.12 no.4 pp. 82
ISSN:
1614-2942
Subject:
Malus domestica; apples; basic-leucine zipper transcription factors; drought; fruiting; gene expression regulation; genes; growth and development; leaves; leucine zipper; models; plant growth; quantitative polymerase chain reaction; reverse transcriptase polymerase chain reaction; roots; salt stress; stress response; stress tolerance; transcription (genetics)
Abstract:
... The basic leucine zipper (bZIP) family is one of the largest transcription factor (TF) families in plants, which play crucial roles in plant growth and development. bZIP proteins are involved in multiple biological processes, as well as responses to various biotic/abiotic stresses. Although genome-wide analysis of the bZIP gene family has been conducted in several plant species, only few comprehen ...
DOI:
10.1007/s11295-016-1043-6

3. Selection of low-variance expressed Malus x domestica (apple) genes for use as quantitative PCR reference genes (housekeepers)

Author:
Judith Bowen; Hilary S. Ireland; Ross Crowhurst; Zhiwei Luo; Amy E. Watson; Toshi Foster; Nigel Gapper; Jim J. Giovanonni; James P. Mattheis; Chris Watkins; David Rudell; Jason W. Johnston; Robert J. Schaffer
Source:
Tree genetics & genomes 2014 v.10 no.3 pp. 751-759
ISSN:
1614-2942
Subject:
Malus domestica; apples; data collection; essential genes; fruiting; gene expression; genomics; messenger RNA; phosphoprotein phosphatase; phytochrome; quantitative polymerase chain reaction; ubiquitination; variance
Abstract:
... To accurately measure gene expression using PCR-based approaches, there is the need for reference genes that have low variance in expression (housekeeping genes) to normalise the data for RNA quantity and quality. For non-model species such as Malus x domestica (apples), previously, the selection of reference genes relied on using homology to reference genes in model species. In this study, a geno ...
DOI:
10.1007/s11295-014-0720-6

4. A FRUITFULL-like gene is associated with genetic variation for fruit flesh firmness in apple (Malus domestica Borkh.)

Author:
Cevik, Volkan; Ryder, Carol D.; Popovich, Alexandra; Manning, Kenneth; King, Graham J.; Seymour, Graham B.
Source:
Tree genetics & genomes 2010 v.6 no.2 pp. 271-279
ISSN:
1614-2942
Subject:
Arabidopsis; Malus domestica; analysis of variance; apples; dehiscence; firmness; fruiting; fruits; genes; genetic variation; linkage groups; loci; phenotypic variation; progeny; texture
Abstract:
... The FRUITFULL (FUL) and SHATTERPROOF (SHP) genes are involved in regulating fruit development and dehiscence in Arabidopsis. We tested the hypothesis that this class of genes are also involved in regulating the development of fleshy fruits, by exploring genetic and phenotypic variation within the apple (Malus domestica) gene pool. We isolated and characterised the genomic sequences of two candidat ...
DOI:
10.1007/s11295-009-0247-4

5. Transcription analysis of apple fruit development using cDNA microarrays

Author:
Soglio, V.; Costa, F.; Molthoff, J. W.; Weemen-Hendriks, W. M. J.; Schouten, H. J.; Gianfranceschi, L.
Source:
Tree genetics & genomes 2009 v.5 no.4 pp. 685-698
ISSN:
1614-2942
Subject:
apples; biochemical pathways; cluster analysis; complementary DNA; developmental stages; fruit quality; fruiting; gene expression regulation; genes; marker-assisted selection; metabolism; microarray technology
Abstract:
... The knowledge of the molecular mechanisms underlying fruit quality traits is fundamental to devise efficient marker-assisted selection strategies and to improve apple breeding. In this study, cDNA microarray technology was used to identify genes whose expression changes during fruit development and maturation thus potentially involved in fruit quality traits. The expression profile of 1,536 transc ...
DOI:
10.1007/s11295-009-0219-8

6. Identification and characterisation of primary microRNAs from apple (Malus domestica cv. Royal Gala) expressed sequence tags

Author:
Gleave, Andrew P.; Ampomah-Dwamena, Charles; Berthold, Susann; Dejnoprat, Supinya; Karunairetnam, Sakuntala; Nain, Bhawana; Wang, Yen-Yi; Crowhurst, Ross N.; MacDiarmid, Robin M.
Source:
Tree genetics & genomes 2008 v.4 no.2 pp. 343-358
ISSN:
1614-2942
Subject:
proteins; messenger RNA; Arabidopsis; apples; flowering; rice; data collection; acids; expressed sequence tags; gene expression; microRNA; Malus domestica; fruiting; leaves
Abstract:
... Microribonucleic acids (miRNAs) are small, non-coding RNAs that play important regulatory roles by down-regulating target transcripts in a sequence-specific manner. The miRBase Registry (Release 8.2) lists 732 miRNAs from flowering plant species, with the majority identified from Arabidopsis, rice and poplar where genome sequence is available. In the absence of genomic sequence and on the basis th ...
DOI:
10.1007/s11295-007-0113-1