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Tree genetics & genomes
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- Author:
- Joukje Buiteveld; Herma JJ Koehorst-van Putten; Linda Kodde; Ivo Laros; Giorgio Tumino; Nicholas P. Howard; Eric van de Weg; Marinus J.M. Smulders
- Source:
- Tree genetics & genomes 2021 v.17 no.4 pp. 32
- ISSN:
- 1614-2942
- Subject:
- Malus sylvestris; alleles; apples; effective population size; gene banks; genetic relationships; genotyping; haplotypes; introgression; plant genetics; pollination; seed orchards; single nucleotide polymorphism; single nucleotide polymorphism arrays; Netherlands
- Abstract:
- ... The Netherlands’ field genebank collection of European wild apple (Malus sylvestris), consisting of 115 accessions, was studied in order to determine whether duplicates and mistakes had been introduced, and to develop a strategy to optimize the planting design of the collection as a seed orchard. We used the apple 20K Infinium single nucleotide polymorphism (SNP) array, developed in M. domestica, ...
- DOI:
- 10.1007/s11295-021-01513-y
- https://doi.org/10.1007/s11295-021-01513-y
- Author:
- Shigeki Moriya; Hiroshi Iwanami; Nobuhiro Kotoda; Takashi Haji; Kazuma Okada; Shingo Terakami; Naozumi Mimida; Toshiya Yamamoto; Kazuyuki Abe
- Source:
- Tree genetics & genomes 2012 v.8 no.4 pp. 709-723
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; Malus prunifolia; Malus toringo; apples; chromosome mapping; cultivars; genes; linkage groups; loci; marker-assisted selection; quantitative trait loci; rootstocks
- Abstract:
- ... Identification of markers associated with genes of interest and quantitative trait loci (QTLs), combined with high-density genetic linkage maps, can help reduce labor and costs by enabling marker-assisted selection (MAS). In this study, a dwarfing apple rootstock cultivar âJM7â (Malus prunifolia à Malus pumila âMalling 9â) and wild apple Malus sieboldii âSanashi 63â (section Sorbomalu ...
- DOI:
- 10.1007/s11295-011-0458-3
- https://doi.org/10.1007/s11295-011-0458-3
3. Apple NPR1 homologs and their alternative splicing forms may contribute to SA and disease responses
- Author:
- Junke Zhang; Peng Jiao; Chong Zhang; Xiaolei Tong; Qinping Wei; Lingfei Xu
- Source:
- Tree genetics & genomes 2016 v.12 no.5 pp. 92
- ISSN:
- 1614-2942
- Subject:
- Arabidopsis; Diplocarpon mali; Malus baccata; Malus domestica; alternative splicing; amino acid sequences; apples; disease resistance; genes; immune response; leaves; phylogeny; reverse transcriptase polymerase chain reaction; salicylic acid; sequence alignment; signal transduction; systemic acquired resistance; transcription (genetics)
- Abstract:
- ... The non-expressor of pathogenesis-related genes 1 (NPR1) plays essential roles in the salicylic acid (SA) signal pathway and in systemic acquired resistance (SAR) responses. Although a genome-wide analysis of NPR1 gene family has been conducted in some plant species, little is known about these genes in apple (Malus spp.). In this study, eight NPR1 homologs were identified within the apple genome ...
- DOI:
- 10.1007/s11295-016-1050-7
- https://doi.org/10.1007/s11295-016-1050-7
- Author:
- Inès Ben Sadok; Aline Tiecher; Didiana Galvez-Lopez; Marc Lahaye; Pauline Lasserre-Zuber; Maryline Bruneau; Sylvain Hanteville; Roland Robic; Raphael Cournol; François Laurens
- Source:
- Tree genetics & genomes 2015 v.11 no.6 pp. 119
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; cold storage; deformation; fruit quality; genotype; hardness; heritability; mechanical properties; models; phenotype; quantitative trait loci; quantitative traits; storage time; texture
- Abstract:
- ... Postharvest texture change is a fundamental question for fruit growers and breeders as it drives consumer acceptability. To decipher the genetic control of fruit texture, we studied an apple segregating population over 2 years at harvest and after 2 months of cold storage. Texture complexity was dissected in quantitative traits, related to (i) sensory perception of fruit quality and (ii) fruit mec ...
- DOI:
- 10.1007/s11295-015-0947-x
- https://doi.org/10.1007/s11295-015-0947-x
- Author:
- Kanehira, Azumi; Yamada, Kaori; Iwaya, Tomomi; Tsuwamoto, Ryo; Kasai, Atsushi; Nakazono, Mikio; Harada, Takeo
- Source:
- Tree genetics & genomes 2010 v.6 no.5 pp. 635-642
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; RNA transport; apples; complementary DNA; fruit trees; messenger RNA; phloem; rootstocks; scions
- Abstract:
- ... Apple (Malus × domestica Borkh.), like many fruit trees, cannot be propagated clonally from seed and is instead propagated by the grafting onto rootstocks. Rootstocks affect the growth of scions, but it is not known why. The circulation of some mRNAs throughout the phloem has recently been shown. To clarify whether RNAs are transported long distance through the graft union of apple trees, we analy ...
- DOI:
- 10.1007/s11295-010-0279-9
- https://doi.org/10.1007/s11295-010-0279-9
- Author:
- M. Troggio; A. Gleave; S. Salvi; D. Chagné; A. Cestaro; S. Kumar; R. N. Crowhurst; S. E. Gardiner
- Source:
- Tree genetics & genomes 2012 v.8 no.3 pp. 509-529
- ISSN:
- 1614-2942
- Subject:
- Malus; apples; bioinformatics; breeding; chromosome mapping; cultivars; databases; evolution; genes; metabolomics; nucleotide sequences; phenotype; proteomics; temperate zones; transcriptomics
- Abstract:
- ... Genome resources for apple (Malus × domestica Borkh), the main fruit crop of temperate regions, have been developed over the past 10 years, culminating in the sequencing of the ‘Golden Delicious’ genome. The apple genome sequence anchored to a high-density linkage map provides the apple community with new tools to identify genes and other functional elements that will enable the study of the evolu ...
- DOI:
- 10.1007/s11295-012-0492-9
- https://doi.org/10.1007/s11295-012-0492-9
- Author:
- Zhaoyu Gu; Dong Meng; Qing Yang; Hui Yuan; Aide Wang; Wei Li; Qiuju Chen; Yi Zhang; Dongmei Wang; Tianzhong Li
- Source:
- Tree genetics & genomes 2015 v.11 no.2 pp. 27
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; calcium; calcium signaling; cell growth; fluorescence; gene expression regulation; genes; pollen; pollen tubes; protein subunits; quantitative polymerase chain reaction; ribonucleases; two hybrid system techniques
- Abstract:
- ... As a signaling molecule in plants and animals, calcium plays important roles in cell growth and development. A concentration gradient of calcium in the apex of tip-growing cells regulates polarized growth. In this study, we cloned the gene encoding a calcineurin B subunit protein, MdCBL5, in “Ralls Janet” apple. We found that MdCBL5 was strongly expressed in pollen and that the encoded protein con ...
- DOI:
- 10.1007/s11295-015-0853-2
- https://doi.org/10.1007/s11295-015-0853-2
- Author:
- Héloïse Bastiaanse; Yordan Muhovski; Dominique Mingeot; Marc Lateur
- Source:
- Tree genetics & genomes 2015 v.11 no.6 pp. 125
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; Venturia inaequalis; apples; breeding; cultivars; disease resistance; fungi; genes; genetic markers; phenotypic variation; progeny; quantitative trait loci; scab diseases
- Abstract:
- ... Scab, caused by the fungus Venturia inaequalis, is one of the most important diseases of apple. Although major scab resistance genes (R gene) have been widely studied, little is known about the molecular mechanisms underlying partial resistance, thought to be more durable. We used a candidate gene approach to decipher the genetic determinism of the durable partial resistance in ‘Président Roulin’, ...
- DOI:
- 10.1007/s11295-015-0948-9
- https://doi.org/10.1007/s11295-015-0948-9
- Author:
- Toshi Foster; Chris Kirk; William T. Jones; Andrew C. Allan; Richard Espley; Sakuntala Karunairetnam; Jasna Rakonjac
- Source:
- Tree genetics & genomes 2007 v.3 no.3 pp. 187-197
- ISSN:
- 1614-2942
- Subject:
- flowering; apples; sequence alignment; signal transduction; summer; allopolyploidy; stems; gibberellic acid; clones; gene expression; amino acids; Malus domestica; databases; leaves; messenger RNA; Arabidopsis; buds; autumn; complementary DNA; quantitative polymerase chain reaction; proteins; transgenic plants; expressed sequence tags
- Abstract:
- ... The hormone gibberellic acid (GA) regulates growth and development throughout the plant life cycle. DELLA proteins are key components of the GA signalling pathway and act to repress GA responses. The “DELLA” amino acid motif is highly conserved among diverse species and is essential for GA-induced destruction of DELLA proteins, which relieves repression. Six genes encoding the DELLA motif were ide ...
- DOI:
- 10.1007/s11295-006-0047-z
- https://doi.org/10.1007/s11295-006-0047-z
- Author:
- Long, Shenshan; Li, Maofu; Han, Zhenhai; Wang, Kun; Li, Tianzhong
- Source:
- Tree genetics & genomes 2010 v.6 no.2 pp. 161-168
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; alleles; apples; crop production; cultivars; polymerase chain reaction
- Abstract:
- ... Apple (Malus domestica Borkh), a member of the Rosaceae, shows gametophytic self-incompatibility (GSI) controlled by polymorphic S-alleles. Identifying the S-genotypes of apple cultivars can be applied on correct assignment of apple cultivars to cross-compatibility groups, which is important for the efficient production of apple fruit. This study characterized three new S-alleles (designated S ₄₄ ...
- DOI:
- 10.1007/s11295-009-0237-6
- https://doi.org/10.1007/s11295-009-0237-6
- Author:
- Yue-zhi Wang; Mei-song Dai; Dan-ying Cai; Lixiang Miao; Lingzhu Wei; Ze-bin Shi
- Source:
- Tree genetics & genomes 2018 v.14 no.4 pp. 62
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; Pyrus; apples; developmental stages; essential genes; eukaryotic cells; fruits; genome expansion; high-throughput nucleotide sequencing; pears; peptide elongation factors; phylogeny; quantitative polymerase chain reaction; reverse transcriptase polymerase chain reaction; ribosomes; species diversity; tissues
- Abstract:
- ... Reference genes are a key factor for the sensitivity and reliability of quantitative reverse transcription-polymerase chain reaction (qRT-PCR) analysis. The elongation factor gene EF1α encodes a highly conserved ubiquitous protein that functions in the binding of aminoacyl-tRNA to the ribosome during peptide synthesis in eukaryotes, which is proposed for qRT-PCR as an internal reference for its pu ...
- DOI:
- 10.1007/s11295-018-1268-7
- https://doi.org/10.1007/s11295-018-1268-7
- Author:
- Henk J. Schouten; Jos Brinkhuis; Aranka van der Burgh; Jan G. Schaart; Remmelt Groenwold; Giovanni A. L. Broggini; Cesare Gessler
- Source:
- Tree genetics & genomes 2014 v.10 no.2 pp. 251-260
- ISSN:
- 1614-2942
- Subject:
- cultivars; Venturia inaequalis; proteins; apples; sporulation; interleukin-1; apoplast; cytoplasm; mammals; induced resistance; introns; hypersensitive response; pathogens
- Abstract:
- ... Apple scab, caused by Venturia inaequalis, is a serious disease of apple. Previously, the scab resistance Rvi15 (Vr2) from the accession GMAL 2473 was genetically mapped, and three candidate resistance genes were identified. Here, we report the cloning and functional characterization of these three genes, named Vr2-A, Vr2-B, and Vr2-C. Each gene was cloned with its native promoter, terminator and ...
- DOI:
- 10.1007/s11295-013-0678-9
- https://doi.org/10.1007/s11295-013-0678-9
- Author:
- De Franceschi, Paolo; Pierantoni, Luca; Dondini, Luca; Grandi, Marco; Sanzol, Javier; Sansavini, Silviero
- Source:
- Tree genetics & genomes 2011 v.7 no.2 pp. 231-240
- ISSN:
- 1614-2942
- Subject:
- Antirrhinum; Petunia; Prunus; Pyrus communis; apples; chromosome mapping; crossing over; gametophytes; genes; haplotypes; loci; males; molecular cloning; pears; pollen; progeny; ribonucleases
- Abstract:
- ... European pear, as well as its close relatives Japanese pear and apple, exhibits S-RNase-based gametophytic self-incompatibility. The male determinant of this self-incompatibility mechanism is a pollen-expressed protein containing an F-box domain; in the genera Petunia (Solanaceae), Antirrhinum (Plantaginaceae), and Prunus (Rosaceae), a single F-box gene determines the pollen S. In apple and Japane ...
- DOI:
- 10.1007/s11295-010-0327-5
- https://doi.org/10.1007/s11295-010-0327-5
- Author:
- Weichen Ni; Longming Zhu; Renhe Sha; Jianmin Tao; Binhua Cai; Sanhong Wang
- Source:
- Tree genetics & genomes 2017 v.13 no.1 pp. 23
- ISSN:
- 1614-2942
- Subject:
- cultivars; protein synthesis; apples; fungal diseases of plants; host plants; linoleate 13S-lipoxygenase; signal transduction; Western blotting; beta-glucanase; proteomics; photosynthesis; Alternaria alternata; plant pathogenic fungi; pathotypes; chitinase
- Abstract:
- ... Alternaria blotch, caused by the Alternaria alternata apple pathotype (A. alternata AP), is one of serious pathogen of apples. In order to better understand the molecular mechanisms that underlie the defense responses of apple resistance to Alternaria blotch disease, a comparative proteomic approach was applied to analyze of susceptible and resistant apple cultivars response to A. alternata AP inf ...
- DOI:
- 10.1007/s11295-017-1104-5
- https://doi.org/10.1007/s11295-017-1104-5
- Author:
- Celton, J.-M.; Tustin, D. S.; Chagné, D.; Gardiner, S. E.
- Source:
- Tree genetics & genomes 2009 v.5 no.1 pp. 93-107
- ISSN:
- 1614-2942
- Subject:
- Erwinia amylovora; apples; Pyrus; Eriosoma lanigerum; seedlings; insects; genetic markers; microsatellite repeats; marker-assisted selection; phenotype; linkage groups; Malus domestica; cultivars; Venturia inaequalis; scions; chromosome mapping; rootstocks; molecular cloning; prediction; single nucleotide polymorphism; dwarfing; expressed sequence tags
- Abstract:
- ... Marker-assisted selection (MAS) offers quick and reliable prediction of the phenotypes of seedlings in large populations and thus opens new approaches for selection to breeders of apple (Malus x domestica Borkh.). The development of framework maps enables the discovery of genetic markers linked to desired traits. Although genetic maps have been reported for apple scion cultivars, none has previous ...
- DOI:
- 10.1007/s11295-008-0171-z
- https://doi.org/10.1007/s11295-008-0171-z
- Author:
- Baiquan Ma; Shuang Zhao; Benhong Wu; Dongmei Wang; Qian Peng; Albert Owiti; Ting Fang; Liao Liao; Collins Ogutu; Schuyler S. Korban; Shaohua Li; Yuepeng Han
- Source:
- Tree genetics & genomes 2016 v.12 no.1 pp. 1
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; chromosome mapping; citric acid; fructose; fruit quality; genetic markers; genotyping; glucose; linkage groups; malic acid; marker-assisted selection; microsatellite repeats; quantitative trait loci; sensory properties; single nucleotide polymorphism; sorbitol; sucrose
- Abstract:
- ... Soluble sugars and organic acids have a strong impact on the overall organoleptic quality of fruits. In this study, we report the identification of quantitative trait loci (QTLs) for individual sugars and organic acids in apple. A high density linkage map of apple was constructed using the 1536 EST-derived SNP GoldenGate genotyping platform. The linkage map consists of 601 molecular markers, inclu ...
- DOI:
- 10.1007/s11295-015-0959-6
- https://doi.org/10.1007/s11295-015-0959-6
17. Construction of an integrated consensus map of the apple genome based on four mapping populations
- Author:
- A. N’Diaye; W. E. Van de Weg; L. P. Kodde; B. Koller; F. Dunemann; M. Thiermann; S. Tartarini; F. Gennari; C. E. Durel
- Source:
- Tree genetics & genomes 2008 v.4 no.4 pp. 727-743
- ISSN:
- 1614-2942
- Subject:
- apples; chromosome number; genetic background; genome; linkage groups; microsatellite repeats; quantitative trait loci
- Abstract:
- ... An integrated consensus genetic map for apple was constructed on the basis of segregation data from four genetically connected crosses (C1 = Discovery × TN10-8, C2 = Fiesta × Discovery, C3 = Discovery × Prima, C4 = Durello di Forli × Fiesta) with a total of 676 individuals using CarthaGene® software. First, integrated female–male maps were built for each population using common female–male simple ...
- DOI:
- 10.1007/s11295-008-0146-0
- https://doi.org/10.1007/s11295-008-0146-0
- Author:
- Daniel A. Edge-Garza; Miguel Villamil-Castro; Dorrie Main; Craig Hardner
- Source:
- Tree genetics & genomes 2021 v.17 no.2 pp. 17
- ISSN:
- 1614-2942
- Subject:
- National Center for Biotechnology Information; Rosaceae; apples; data collection; databases; genome; loci; plant genetics; single nucleotide polymorphism arrays
- Abstract:
- ... Accurate SNP locus identifiers are essential for the correct matching and aggregation of multiple historical datasets. The National Center for Biotechnology Information (NCBI) issued unique “submitted SNP identification” numbers (ssIDs) for every published SNP submitted to its database. Discrepant ssID information was discovered for 78 SNPs for the 8K IRSC apple SNP array while attempting to colla ...
- DOI:
- 10.1007/s11295-021-01500-3
- https://doi.org/10.1007/s11295-021-01500-3
- Author:
- Hilde Nybom; Masoud Ahmadi-Afzadi; Jasna Sehic; Maarten Hertog
- Source:
- Tree genetics & genomes 2013 v.9 no.1 pp. 279-290
- ISSN:
- 1614-2942
- Subject:
- DNA; alleles; apples; cell walls; cold storage; correlation; cultivars; discriminant analysis; ethylene production; firmness; gene frequency; germplasm; least squares; loci; polyploidy; storage time; texture
- Abstract:
- ... Several different genes have been proposed as responsible for fruit texture variability at harvest and/or after storage. We have analysed 127 apple cultivars for allelic composition in two key genes that are directly involved in the ethylene biosynthesis pathway, Md-ACS1 and Md-ACO1, and two other genes that are involved in cell wall degradation, Md-Exp7 and Md-PG1. Firmness was measured with a pe ...
- DOI:
- 10.1007/s11295-012-0554-z
- https://doi.org/10.1007/s11295-012-0554-z
- Author:
- Marijn Rymenants; Eric van de Weg; Annemarie Auwerkerken; Inge De Wit; Andrzej Czech; Bart Nijland; Henri Heuven; Nico De Storme; Wannes Keulemans
- Source:
- Tree genetics & genomes 2020 v.16 no.5 pp. 71
- ISSN:
- 1614-2942
- Subject:
- acidity; apples; cold storage; fruit acids; fruit quality; genotyping; incomplete dominance; loci; models; plant genetics; sensory evaluation; single nucleotide polymorphism arrays; sweetness
- Abstract:
- ... Acidity and sweetness are important qualities for apple breeders and understanding their genetic regulation can improve the breeding process. In previous QTL studies, fruit quality assessments were performed using instrumental measurements, leading to the identification of two major QTL Ma and Ma3. Here, we use sensorial data to investigate the role of known and unknown genetic factors in the perc ...
- DOI:
- 10.1007/s11295-020-01466-8
- https://doi.org/10.1007/s11295-020-01466-8
- Author:
- Patocchi, A.; Fernández-Fernández, F.; Evans, K.; Gobbin, D.; Rezzonico, F.; Boudichevskaia, A.; Dunemann, F.; Stankiewicz-Kosyl, M.; Mathis-Jeanneteau, F.; Durel, C. E.; Gianfranceschi, L.; Costa, F.; Toller, C.; Cova, V.; Mott, D.; Komjanc, M.; Barbaro, E.; Kodde, L.; Rikkerink, E.; Gessler, C.; van de Weg, W. E.
- Source:
- Tree genetics & genomes 2009 v.5 no.1 pp. 211-223
- ISSN:
- 1614-2942
- Subject:
- DNA; alleles; apples; genotype; genotyping; linkage groups; loci; microsatellite repeats; polymerase chain reaction; sustainable agriculture
- Abstract:
- ... A series of 21 multiplex (MP) polymerase chain reactions containing simple sequence repeat (SSR) markers spanning most of the apple genome has been developed. Eighty-eight SSR markers, well distributed over all 17 linkage groups (LGs), have been selected. Eighty-four of them were included in 21 different MPs while four could not be included in any MPs. The 21 MPs were then used to genotype approxi ...
- DOI:
- 10.1007/s11295-008-0176-7
- https://doi.org/10.1007/s11295-008-0176-7
- Author:
- Isabelle O. Baumgartner; Markus Kellerhals; Fabrizio Costa; Luca Dondini; Giulia Pagliarani; Roberto Gregori; Stefano Tartarini; Lucie Leumann; François Laurens; Andrea Patocchi
- Source:
- Tree genetics & genomes 2016 v.12 no.3 pp. 35
- ISSN:
- 1614-2942
- Subject:
- DNA; Dysaphis plantaginea; Malus domestica; Venturia inaequalis; apples; disease resistance; firmness; fruit quality; genes; genetic markers; genomics; genotyping; marker-assisted selection; pest resistance; planting seed; polymerase chain reaction; powdery mildew; seedlings; single nucleotide polymorphism; sowing; storage quality; texture
- Abstract:
- ... The development of molecular markers linked to specific traits is now routine practice, but the gap between genomics and breeding often delays their application. In the frame of the FP7 European project FruitBreedomics, apple pilot studies were designed to exploit the project’s outcomes towards the practical application of marker-assisted breeding (MAB) programs. The aim of this pilot study was to ...
- DOI:
- 10.1007/s11295-016-0994-y
- https://doi.org/10.1007/s11295-016-0994-y
- Author:
- F. Fernández-Fernández; K. M. Evans; J. B. Clarke; C. L. Govan; C. M. James; S. Marič; K. R. Tobutt
- Source:
- Tree genetics & genomes 2008 v.4 no.3 pp. 469-479
- ISSN:
- 1614-2942
- Subject:
- Malus; Prunus; agronomic traits; apples; chromosome mapping; chromosome number; color; disease resistance; genes; genetic markers; growth habit; linkage groups; loci; microsatellite repeats; mildews; progeny
- Abstract:
- ... Simple sequence repeat (SSR) markers developed from Malus, as well as Prunus, Pyrus and Sorbus, and some other sequence-tagged site (STS) loci were analysed in an interspecific F₁ apple progeny from the cross ‘Fiesta’ × ‘Totem’ that segregated for several agronomic characters. A linkage map was constructed using 259 STS loci (247 SSRs, four SCARs and eight known-function genes) and five genes for ...
- DOI:
- 10.1007/s11295-007-0124-y
- https://doi.org/10.1007/s11295-007-0124-y
- Author:
- Sargent, Daniel J.; Marchese, Annalisa; Simpson, David W.; Howad, Werner; Fernández-Fernández, Felicidad; Monfort, Amparo; Arús, Pere; Evans, Kate M.; Tobutt, Kenneth R.
- Source:
- Tree genetics & genomes 2009 v.5 no.1 pp. 133-145
- ISSN:
- 1614-2942
- Subject:
- stone fruits; Arabidopsis; apples; loci; complementary DNA; marker-assisted selection; strawberries; linkage groups; parents; polymerase chain reaction; Prunus; chromosome mapping; Malus; progeny; exons; molecular biology; databases; Fragaria
- Abstract:
- ... The Rosaceae contains many economically valuable crop genera, including Malus (apple), Fragaria (strawberry), and Prunus (stone fruit). There has been increasing interest in the development of linkage maps for these species, with a view to marker-assisted selection to assist breeding programs and, recently, in the development of transferable markers to permit syntenic comparisons of maps of differ ...
- DOI:
- 10.1007/s11295-008-0178-5
- https://doi.org/10.1007/s11295-008-0178-5
25. Differences in acidity of apples are probably mainly caused by a malic acid transporter gene on LG16
- Author:
- Sabaz Ali Khan; Jules Beekwilder; Jan G. Schaart; Roland Mumm; Jose Miguel Soriano; Evert Jacobsen; Henk J. Schouten
- Source:
- Tree genetics & genomes 2013 v.9 no.2 pp. 475-487
- ISSN:
- 1614-2942
- Subject:
- Arabidopsis; Malus; acidity; alleles; apples; cytosol; loci; malates; malic acid; pH; proteins; taste; vacuoles
- Abstract:
- ... Acidity has profound effects on the taste of apples (Malus × domestica). Malic acid is the predominant organic acid in apples. Differences in malic acid content are caused by differences in accumulation of malic acid in the vacuole. This accumulation may be caused by a gene that is responsible for transport of malic acid from the cytosol into the vacuole. Here, we provide evidence that a malic aci ...
- DOI:
- 10.1007/s11295-012-0571-y
- https://doi.org/10.1007/s11295-012-0571-y
26. Dissecting apple tree architecture into genetic, ontogenetic and environmental effects: QTL mapping
- Author:
- Segura, Vincent; Durel, Charles-Eric; Costes, Evelyne
- Source:
- Tree genetics & genomes 2009 v.5 no.1 pp. 165-179
- ISSN:
- 1614-2942
- Subject:
- apples; climatic factors; developmental stages; environmental impact; genotype; linear models; loci; ontogeny; progeny; quantitative trait loci; quantitative traits; shoots; tree age; trees; variance
- Abstract:
- ... The present study aimed to dissect tree architectural plasticity into genetic, ontogenetic and environmental effects over the first 4 years of growth of an apple F1 progeny by means of quantitative traits loci (QTL) mapping. Both growth and branching processes were phenotyped on the consecutive annual shoots of different axes within a tree. For each studied trait, predicted values (best linear unb ...
- DOI:
- 10.1007/s11295-008-0181-x
- https://doi.org/10.1007/s11295-008-0181-x
- Author:
- Sushan Ru; Craig Hardner; Kate Evans; Dorrie Main; Patrick A. Carter; Julia Harshman; Paul Sandefur; Daniel Edge-Garza; Cameron Peace
- Source:
- Tree genetics & genomes 2021 v.17 no.1 pp. 13
- ISSN:
- 1614-2942
- Subject:
- DNA; acidity; apples; cost effectiveness; firmness; fruit acids; genetic improvement; genome; hardness; phenotype; phenotypic selection; plant genetics; seedlings; variance
- Abstract:
- ... Marker-assisted seedling selection (MASS) has much potential to improve the efficiency of traditional apple breeding. Theoretical and empirical evaluation of selection cost and theoretical evaluation of genetic gain in previous studies support this promise. However, there is a lack of empirical validation of MASS efficiency reported in tree fruit crops for genetic gain and cost nor even genetic ga ...
- DOI:
- 10.1007/s11295-021-01494-y
- https://doi.org/10.1007/s11295-021-01494-y
- Author:
- Kouassi, Abou Bakari; Durel, Charles-Eric; Costa, Fabrizio; Tartarini, Stefano; van de Weg, Eric; Evans, Kate; Fernandez-Fernandez, Felicidad; Govan, Ceri; Boudichevskaja, Anastasia; Dunemann, Frank; Antofie, Adriana; Lateur, Marc; Stankiewicz-Kosyl, Marta; Soska, Andrzej; Tomala, Kazimierz; Lewandowski, Markus; Rutkovski, Krzysztof; Zurawicz, Edwards; Guerra, Walter; Laurens, François
- Source:
- Tree genetics & genomes 2009 v.5 no.4 pp. 659-672
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; acidity; apples; breeding; color; computer software; firmness; flavor; fruit quality; genetic correlation; genotype; hardness; heritability; juiciness; prediction; sugars; taste; texture; Europe
- Abstract:
- ... Genetic parameters for apple (Malus x domestica) fruit external traits (fruit size, ground colour, proportion of over colour and attractiveness) and sensory traits (firmness, crispness, texture, juiciness, flavour, sugar, acidity and global taste) were estimated using 2,207 pedigreed genotypes from breeding programmes in six European countries. Data were scored for 3 years and four periods during ...
- DOI:
- 10.1007/s11295-009-0217-x
- https://doi.org/10.1007/s11295-009-0217-x
- Author:
- Jiangmei Sun; Hao Yin; Leiting Li; Yue Song; Lian Fan; Shaoling Zhang; Jun Wu
- Source:
- Tree genetics & genomes 2015 v.11 no.2 pp. 25
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; Pyrus communis; alleles; apples; bud sport; cultivars; genetic background; genetic markers; genetic polymorphism; genetic relationships; genetic variation; genomics; loci; mutants; pears
- Abstract:
- ... Inter-retrotransposon amplified polymorphisms (IRAP) are one of the main components of the retrotransposon-based molecular marker system, but currently have no applications in pear. In this context, new IRAP markers were developed and used to study the genetic polymorphism of pear cultivars and bud mutants. In total, eight polymorphic IRAP markers were selected in ten genotypes of pear with a wide ...
- DOI:
- 10.1007/s11295-015-0849-y
- https://doi.org/10.1007/s11295-015-0849-y
- Author:
- Diana I. Trujillo; Harpartap S. Mann; Cindy B. S. Tong
- Source:
- Tree genetics & genomes 2012 v.8 no.1 pp. 27-38
- ISSN:
- 1614-2942
- Subject:
- Malus; alleles; apples; cold storage; cultivars; genotype; hardness; raw fruit
- Abstract:
- ... The possible relationship of seven expansin genes to maintenance of apple (Malus à domestica Borkh.) crispness during storage was examined. Expression of expansin genes MdEXPA1, MdEXPA2, MdEXPA3, MdEXPA4, MdEXPA5, and MdEXPA7 was quantified among apple cultivars that remained crisp or lost crispness between harvest and after 8 weeks of cold storage. MdEXPA1 was expressed in low quantities in fre ...
- DOI:
- 10.1007/s11295-011-0417-z
- https://doi.org/10.1007/s11295-011-0417-z
- Author:
- Paris, Roberta; Cova, Valentina; Pagliarani, Giulia; Tartarini, Stefano; Komjanc, Matteo; Sansavini, Silviero
- Source:
- Tree genetics & genomes 2009 v.5 no.1 pp. 81-91
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; Malus floribunda; Venturia inaequalis; apples; complementary DNA; databases; disease resistance; gene expression regulation; genetic transformation; leaves; polymerase chain reaction; scab diseases; suppression subtractive hybridization; transgenic plants; unigenes; woody plants
- Abstract:
- ... Apple scab resistance is one of the most well-characterized plant-pathogen interactions in a woody plant species. While the HcrVf2 gene from the wild apple Malus floribunda 821 has proved capable of conferring scab resistance to the susceptible cv. Gala after genetic transformation, its identification represents only the first step in understanding the molecular mechanisms and, hence, the network ...
- DOI:
- 10.1007/s11295-008-0177-6
- https://doi.org/10.1007/s11295-008-0177-6
- Author:
- Cevik, Volkan; Ryder, Carol D.; Popovich, Alexandra; Manning, Kenneth; King, Graham J.; Seymour, Graham B.
- Source:
- Tree genetics & genomes 2010 v.6 no.2 pp. 271-279
- ISSN:
- 1614-2942
- Subject:
- Arabidopsis; Malus domestica; analysis of variance; apples; dehiscence; firmness; fruiting; fruits; genes; genetic variation; linkage groups; loci; phenotypic variation; progeny; texture
- Abstract:
- ... The FRUITFULL (FUL) and SHATTERPROOF (SHP) genes are involved in regulating fruit development and dehiscence in Arabidopsis. We tested the hypothesis that this class of genes are also involved in regulating the development of fleshy fruits, by exploring genetic and phenotypic variation within the apple (Malus domestica) gene pool. We isolated and characterised the genomic sequences of two candidat ...
- DOI:
- 10.1007/s11295-009-0247-4
- https://doi.org/10.1007/s11295-009-0247-4
- Author:
- G. Pagliarani; E. Dapena; M. Miñarro; C. Denancé; Y. Lespinasse; E. Rat-Morris; M. Troggio; C. E. Durel; S. Tartarini
- Source:
- Tree genetics & genomes 2016 v.12 no.3 pp. 56
- ISSN:
- 1614-2942
- Subject:
- Dysaphis plantaginea; apples; chromosome mapping; cultivars; fruit growing; genes; genetic markers; insect pests; linkage groups; loci; marker-assisted selection; microsatellite repeats; pest resistance; plant damage; polymerase chain reaction; single nucleotide polymorphism
- Abstract:
- ... Rosy apple aphid (Dysaphis plantaginea), is one of the major insect pests of apple, causing serious physical and economic damage to fruit production. A dominant resistance gene Dp-fl was previously mapped at the bottom of linkage group LG8 from the cultivar ‘Florina’, linked to the SSR CH01h10. The development of additional genetic markers mapping closer to Dp-fl was needed to position the gene ac ...
- DOI:
- 10.1007/s11295-016-1015-x
- https://doi.org/10.1007/s11295-016-1015-x
- Author:
- Takuya Morimoto; Kiyoshi Banno
- Source:
- Tree genetics & genomes 2015 v.11 no.1 pp. 807
- ISSN:
- 1614-2942
- Subject:
- Malus; apples; branching; chromosome mapping; cultivars; genes; genotype; genotyping; internodes; loci; marker-assisted selection; microsatellite repeats; planting; progeny
- Abstract:
- ... The columnar trait in apple (Malus × domestica Borkh.) is characterized by short internodes, reduced branching, and increased spurs, which are labor-saving features useful for high-density planting. In this study, we used six segregating populations of a descendant of the columnar-type cultivar ‘Maypole’ and constructed a genetic linkage map for the columnar gene (Co). Based on the linkage map of ...
- DOI:
- 10.1007/s11295-014-0807-0
- https://doi.org/10.1007/s11295-014-0807-0
- Author:
- Craig M. Hardner; Kate Evans; Chris Brien; Fred Bliss; Cameron Peace
- Source:
- Tree genetics & genomes 2016 v.12 no.2 pp. 20
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; breeding; color; crop production; cultivars; firmness; fruit quality; genetic correlation; genetic improvement; genetic variation; hardness; juiciness; models; prediction; selection response; storage time; sweetness; titratable acidity; Washington (state)
- Abstract:
- ... Accurate prediction of genetic potential and response to selection in breeding requires knowledge of genetic parameters for important selection traits. Data from breeding trials can be used to obtain estimates of these parameters so that predictions are directly relevant to the improvement program. Here, a factor allocation diagram was developed to describe the sampling design used to assess the q ...
- DOI:
- 10.1007/s11295-016-0977-z
- https://doi.org/10.1007/s11295-016-0977-z
- Author:
- Satish Kumar; Richard Volz; Rosemary Weskett
- Source:
- Tree genetics & genomes 2011 v.7 no.5 pp. 1079-1088
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; breeding; color; cultivars; fruit quality; genetic variance; genotype; heritability; ingestion; parents; progeny; roots; rootstocks; seedlings; variance
- Abstract:
- ... The comparative performance of vegetative propagules (VP) grafted on ‘M. 9’ rootstock and own-rooted (OR) seedlings of the same genotypes was investigated for apple [Malus x domestica (Borkh.)] fruit quality traits using offspring from 22 control-pollinated families. Fifteen fruit quality traits including fruit size and shape, skin colour, russet and sensory eating characteristics were evaluated f ...
- DOI:
- 10.1007/s11295-011-0396-0
- https://doi.org/10.1007/s11295-011-0396-0
37. Genetic characterization of flesh browning trait in apple using the non-browning cultivar ‘Aori 27’
- Author:
- Junko Tazawa; Hidemi Oshino; Tomoyuki Kon; Satoshi Kasai; Tsuyoshi Kudo; Yoshimichi Hatsuyama; Tomoko Fukasawa-Akada; Toshiya Yamamoto; Miyuki Kunihisa
- Source:
- Tree genetics & genomes 2019 v.15 no.4 pp. 49
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; acidity; alleles; ancestry; apples; catechol oxidase; chromosome mapping; crossing; cultivars; enzymatic browning; fruits; genomics; haplotypes; homozygosity; inheritance (genetics); juices; loci; parents; phenotypic variation; polyphenols; quantitative trait loci
- Abstract:
- ... Market demand for non-browning apple (Malus × domestica Borkh.) fruit is expected to increase. To facilitate development of non-browning cultivars, we investigated the origin, inheritance pattern, and causal genomic region of the non-browning trait through genetic and quantitative trait loci (QTL) analysis of two F₁ populations (165A27 and KA27) derived from crosses between the non-browning cultiv ...
- DOI:
- 10.1007/s11295-019-1356-3
- https://doi.org/10.1007/s11295-019-1356-3
- Author:
- Richards, Christopher M.; Volk, Gayle M.; Reilley, Ann A.; Henk, Adam D.; Lockwood, Dale R.; Reeves, Patrick A.; Forsline, Philip L.
- Source:
- Tree genetics & genomes 2009 v.5 no.2 pp. 339-347
- ISSN:
- 1614-2942
- Subject:
- Malus sieversii; Markov chain; apples; data collection; genes; genetic variation; genotype; germplasm; loci; microsatellite repeats; models; population structure; seedlings; trees; wild relatives; Kazakhstan
- Abstract:
- ... Malus sieversii (Lebed.) M. Roem. is a wild progenitor species of the domesticated apple. It is found across a mountainous region of central Asia and has been the focus of several collection expeditions by the USDA-ARS-National Plant Germplasm System. This study used microsatellite variation at seven loci to estimate diversity and differentiation within M. sieversii using several complimentary app ...
- DOI:
- 10.1007/s11295-008-0190-9
- https://doi.org/10.1007/s11295-008-0190-9
- Author:
- Jorge Urrestarazu; Carlos Miranda; Luis G. Santesteban; José B. Royo
- Source:
- Tree genetics & genomes 2012 v.8 no.6 pp. 1163-1180
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; alleles; apples; cultivars; genetic variation; genotype; microsatellite repeats; Spain
- Abstract:
- ... A set of 493 old and local Spanish accessions of apple (Malus x domestica Borkh) maintained at three collections in Northeastern Spain was studied using 16 simple sequence repeats in order to estimate their genetic diversity and to identify the genetic structure and relationships among their accessions. An additional diverse set of 45 apple cultivars, including old Spanish and international cultiv ...
- DOI:
- 10.1007/s11295-012-0502-y
- https://doi.org/10.1007/s11295-012-0502-y
- Author:
- Yuan Gao; Fengzhi Liu; Kun Wang; Dajiang Wang; Xin Gong; Lijun Liu; Christopher M. Richards; Adam D. Henk; Gayle M. Volk
- Source:
- Tree genetics & genomes 2015 v.11 no.5 pp. 106
- ISSN:
- 1614-2942
- Subject:
- Malus baccata; USSR; Malus domestica; Malus prunifolia; Malus sieversii; apples; breeding; cultivars; genetic variation; germplasm; landraces; microsatellite repeats; wild relatives; China; Japan; North America; Western European region
- Abstract:
- ... The Research Institute of Pomology (IP), Chinese Academy of Agricultural Sciences (CAAS) in Xingcheng, China, maintains hundreds of apple accessions that originated from around the world. We have used 16 microsatellites to assess the diversity and differentiation of 391 accessions within the IP that represent Malus × domestica (from China, Japan, former Soviet Republics, and Western countries) as ...
- Handle:
- 10113/62431
- DOI:
- 10.1007/s11295-015-0913-7
- https://doi.org/10.1007/s11295-015-0913-7
- Author:
- Stijn Vanderzande; Diego Micheletti; Michela Troggio; Mark W. Davey; Johan Keulemans
- Source:
- Tree genetics & genomes 2017 v.13 no.6 pp. 125
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; breeding; chromosome mapping; cultivars; genetic markers; genetic variation; genome; genotyping; germplasm; germplasm conservation; kinship; linkage disequilibrium; population structure; single nucleotide polymorphism; triploidy; Belgium
- Abstract:
- ... The identification of molecular markers associated with economic and quality traits will help improve breeding for new apple (Malus × domestica Borkh.) cultivars. Tools such as the 8K apple SNP array developed by the RosBREED consortium allow for high-throughput genotyping of SNP polymorphisms within collections. However, genetic characterization and the identification of population stratification ...
- DOI:
- 10.1007/s11295-017-1206-0
- https://doi.org/10.1007/s11295-017-1206-0
42. Genetic mapping of a locus controlling the intergeneric hybridization barrier between apple and pear
- Author:
- Takuya Morimoto; Maia Inaoka; Kiyoshi Banno; Akihiro Itai
- Source:
- Tree genetics & genomes 2020 v.16 no.1 pp. 5
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; Pyrus communis; Pyrus pyrifolia; apples; genetic analysis; genomics; genotyping; hybrids; intergeneric hybridization; loci; pears; plant genetics; pollen; pollen tubes; pollination; reproductive isolation
- Abstract:
- ... Hybridizations involving different species are often hindered because of incompatibility reactions. Although these reproductive barriers have been observed in many plant species, the underlying mechanisms remain to be comprehensively elucidated. In this study, we detected a hybridization barrier between apple (Malus × domestica) and pear (Pyrus spp.) belonging to different genera in the subtribe M ...
- DOI:
- 10.1007/s11295-019-1397-7
- https://doi.org/10.1007/s11295-019-1397-7
- Author:
- Vincent G. M. Bus; Reiny W. A. Scheper; Monika Walter; Rebecca E. Campbell; Biff Kitson; Lauren Turner; Brent M. Fisher; Sarah L. Johnston; Chen Wu; Cecilia H. Deng; Gagandeep Singla; Deepa Bowatte; Linley K. Jesson; Duncan I. Hedderley; Richard K. Volz; David Chagné; Susan E. Gardiner
- Source:
- Tree genetics & genomes 2019 v.15 no.2 pp. 25
- ISSN:
- 1614-2942
- Subject:
- Malus; Neonectria ditissima; apples; bioinformatics; breeding programs; chromosome mapping; conidia; cultivars; disease course; disease resistance; genetic markers; greenhouses; growers; leaves; linkage groups; loci; marker-assisted selection; nucleotide sequences; pathogens; phenotype; progeny; quantitative trait loci; resistance genes; roots; seedlings; shoots; single nucleotide polymorphism; trees
- Abstract:
- ... Current control strategies for the major apple disease European canker (EC) are laborious and expensive, and often do not prevent progression of the disease, which can lead to loss of trees and therefore production. Hence, the development of resistant cultivars is a significant goal for breeders supporting growers in maritime climates conducive to the disease. With genetic markers increasingly bei ...
- DOI:
- 10.1007/s11295-019-1332-y
- https://doi.org/10.1007/s11295-019-1332-y
- Author:
- Moriya, Shigeki; Iwanami, Hiroshi; Takahashi, Sae; Kotoda, Nobuhiro; Suzaki, Kouichi; Yamamoto, Toshiya; Abe, Kazuyuki
- Source:
- Tree genetics & genomes 2010 v.6 no.2 pp. 195-203
- ISSN:
- 1614-2942
- Subject:
- Agrobacterium radiobacter; Malus toringo; alleles; apples; chromosome mapping; crown galls; genetic markers; marker-assisted selection; microsatellite repeats; phenotypic variation; quantitative trait loci; rootstocks; saplings
- Abstract:
- ... Crown gall, caused by Agrobacterium tumefaciens, causes severe damage to apple saplings resulting in weak growth and loss of commercial value. Developing molecular markers linked to crown gall resistance genes, and establishing a marker-assisted selection (MAS) for such a trait would be an effective way to improve rootstock breeding for crown gall resistance. The wild apple Malus sieboldii Sanashi ...
- DOI:
- 10.1007/s11295-009-0240-y
- https://doi.org/10.1007/s11295-009-0240-y
- Author:
- Shinji Fukuda; Keiichiro Ishimoto; Shusei Sato; Shingo Terakami; Toshiya Yamamoto; Naofumi Hiehata
- Source:
- Tree genetics & genomes 2014 v.10 no.4 pp. 875-883
- ISSN:
- 1614-2942
- Subject:
- Eriobotrya japonica; Pseudomonas syringae pv. eriobotryae; apples; chromosome mapping; cultivars; genetic markers; genome; genomics; introgression; linkage groups; loci; loquats; marker-assisted selection; microsatellite repeats
- Abstract:
- ... Loquat canker disease, caused by Pseudomonas syringae pv. eriobotryae, is one of the most harmful diseases of commercial cultivars of loquat (Eriobotrya japonica). To introgress resistance to loquat canker, we identified the linkage group and position of the resistance locus derived from the related wild species bronze loquat (Eriobotrya deflexa). The segregation of resistance and susceptibility f ...
- DOI:
- 10.1007/s11295-014-0728-y
- https://doi.org/10.1007/s11295-014-0728-y
- Author:
- V. Ferreira; A. M. Ramos-Cabrer; V. Carnide; O. Pinto-Carnide; A. Assunção; A. Marreiros; R. Rodrigues; S. Pereira-Lorenzo; I. Castro
- Source:
- Tree genetics & genomes 2016 v.12 no.3 pp. 36
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; analysis of variance; apples; correspondence analysis; cultivars; diploidy; gene pool; genetic techniques and protocols; genetic variation; genotype; germplasm; germplasm conservation; homonym; hybridization; landraces; microsatellite repeats; triploidy; Portugal
- Abstract:
- ... A set of 87 apple accessions, located in three Portuguese apple germplasm collections, plus eight reference cultivars, were analyzed using 16 SSRs with the aim of assessing their genetic diversity and structure and evaluating relationships among them. Among the accessions studied, 64 unique genotypes were identified, 51 diploids and 13 putative triploids, revealing 19 groups of synonyms and 4 of h ...
- DOI:
- 10.1007/s11295-016-0997-8
- https://doi.org/10.1007/s11295-016-0997-8
- Author:
- Abe, Kazuyuki; Kotoda, Nobuhiro; Kato, Hidenori; Soejima, Jun-ichi
- Source:
- Tree genetics & genomes 2011 v.7 no.2 pp. 363-372
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; Malus toringo; Valsa; apples; biological resistance; breeding value; general combining ability; genetic variance; genotype; heritability; hybridization; hybrids; linear models; parents; prediction; progeny; reciprocal crosses; specific combining ability; variance; virulence
- Abstract:
- ... Malus sieboldii Rehd. exhibits high levels of resistance to Valsa canker caused by Valsa ceratosperma (Tode ex Fr.) Maire while cultivated apples (Malus domestica Borkh.) are susceptible to the disease. In this study, progenies from 23 full-sib families derived from both inter- and intra-specific hybridization among 16 Malus genotypes as parents were assessed for resistance to V. ceratosperma (Vc) ...
- DOI:
- 10.1007/s11295-010-0337-3
- https://doi.org/10.1007/s11295-010-0337-3
- Author:
- Yash P. Khajuria; Sanjana Kaul; Aijaz A. Wani; Manoj K. Dhar
- Source:
- Tree genetics & genomes 2018 v.14 no.2 pp. 16
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; Malus floribunda; Venturia inaequalis; apples; binding sites; breeding programs; cultivars; disease control; disease resistance; fungicides; gene interaction; genetic markers; linkage groups; marker-assisted selection; parents; progeny; resistance genes; wild relatives
- Abstract:
- ... Apple (Malus × domestica) is the third important fruit in terms of production and consumption worldwide. Apple scab caused by Venturia inaequalis is the most devastating disease of apple. In the apple-growing regions, many fungicides are sprayed to control the disease leading to increase in the production cost. Development of scab-resistant cultivars is the long-lasting solution to control the dis ...
- DOI:
- 10.1007/s11295-018-1226-4
- https://doi.org/10.1007/s11295-018-1226-4
- Author:
- Bus, Vincent G. M.; Bassett, Heather C. M.; Bowatte, Deepa; Chagné, David; Ranatunga, Chandra A.; Ulluwishewa, Dulantha; Wiedow, Claudia; Gardiner, Susan E.
- Source:
- Tree genetics & genomes 2010 v.6 no.3 pp. 477-487
- ISSN:
- 1614-2942
- Subject:
- Eriosoma lanigerum; Venturia inaequalis; apples; chromosome mapping; durability; genes; marker-assisted selection; mildews; pests; powdery mildew; progeny
- Abstract:
- ... Apple is host to a wide range of pests and diseases, with several of these, such as apple scab, powdery mildew and woolly apple aphid, being major causes of damage in most areas around the world. Resistance breeding is an effective way of controlling pests and diseases, provided that the resistance is durable. As the gene pyramiding strategy for increasing durability requires a sufficient supply o ...
- DOI:
- 10.1007/s11295-009-0265-2
- https://doi.org/10.1007/s11295-009-0265-2
50. Genome mapping of three major resistance genes to woolly apple aphid (Eriosoma lanigerum Hausm.)
- Author:
- Bus, V. G. M.; Chagné, D.; Bassett, H. C. M.; Bowatte, D.; Calenge, F.; Celton, J.-M.; Durel, C.-E.; Malone, M. T.; Patocchi, A.; Ranatunga, A. C.; Rikkerink, E. H. A.; Tustin, D. S.; Zhou, J.; Gardiner, S. E.
- Source:
- Tree genetics & genomes 2008 v.4 no.2 pp. 223-236
- ISSN:
- 1614-2942
- Subject:
- DNA; Eriosoma lanigerum; Malus toringo; apples; chromosome mapping; cultivars; genetic markers; linkage groups; major genes; marker-assisted selection; pest control; pests; progeny; random amplified polymorphic DNA technique; rootstocks; screening
- Abstract:
- ... Woolly apple aphid (WAA; Eriosoma lanigerum Hausm.) can be a major economic problem to apple growers in most parts of the world, and resistance breeding provides a sustainable means to control this pest. We report molecular markers for three genes conferring WAA resistance and placing them on two linkage groups (LG) on the genetic map of apple. The Er1 and Er2 genes derived from 'Northern Spy' and ...
- DOI:
- 10.1007/s11295-007-0103-3
- https://doi.org/10.1007/s11295-007-0103-3
- Author:
- Rui Li; Jian-Ping An; Chun-Xiang You; Xiao-Fei Wang; Yu-Jin Hao
- Source:
- Tree genetics & genomes 2018 v.14 no.4 pp. 61
- ISSN:
- 1614-2942
- Subject:
- Arabidopsis; Bryophyta; Malus domestica; abiotic stress; apples; bioinformatics; flowers; fruits; gene duplication; genes; genome-wide association study; leaves; models; phylogeny; proteins; rice; roots; signal transduction; stems; strigolactones
- Abstract:
- ... Strigolactones (SLs) are a recently discovered type of plant hormone that controls various developmental processes. The DWARF53 (D53) protein in rice and the SMAX1-LIKE (SMXL) family in Arabidopsis repress SL signaling. In this study, bioinformatics analyses were performed, and 236 SMXL proteins were identified in 28 sequenced plants. A phylogenetic analysis indicated that all potential SMXL prote ...
- DOI:
- 10.1007/s11295-018-1275-8
- https://doi.org/10.1007/s11295-018-1275-8
- Author:
- Miyuki Kunihisa; Takeshi Hayashi; Yoshimichi Hatsuyama; Tomoko Fukasawa-Akada; Hirohide Uenishi; Toshimi Matsumoto; Tomoyuki Kon; Satoshi Kasai; Tsuyoshi Kudo; Hidemi Oshino; Toshiya Yamamoto; Junko Tazawa
- Source:
- Tree genetics & genomes 2021 v.17 no.1 pp. 11
- ISSN:
- 1614-2942
- Subject:
- apples; cultivars; genome-wide association study; germplasm conservation; homozygosity; juices; oxidoreductases; phenotypic variation; plant genetics; polyphenols; quantitative traits; variance
- Abstract:
- ... Flesh browning after cutting or bruising reduces the commercial value of apple fruit. Here, we investigated the genetic factors that regulate flesh browning (at 15 min and 24 h after grating) by a genome-wide association study (GWAS) of 24 sib-families (468 genotypes). Three quantitative trait loci (QTLs) were detected on chr5, chr16, and chr17. Their effects were estimated in a germplasm collecti ...
- DOI:
- 10.1007/s11295-021-01492-0
- https://doi.org/10.1007/s11295-021-01492-0
53. Genome-wide identification and analysis of the apple (Malus × domestica Borkh.) TIFY gene family
- Author:
- Xiaoqin Li; Xiangjing Yin; Hao Wang; Jun Li; Chunlei Guo; Hua Gao; Yi Zheng; Chonghui Fan; Xiping Wang
- Source:
- Tree genetics & genomes 2015 v.11 no.1 pp. 808
- ISSN:
- 1614-2942
- Subject:
- Arabidopsis; Malus domestica; abiotic stress; abscisic acid; apples; drought; ethylene; genes; methyl jasmonate; phylogeny; salicylic acid; salinity; stress response; stress tolerance; transcription factors; woody plants
- Abstract:
- ... TIFY transcription factors comprise a plant-specific family involved in the regulation of diverse developmental processes and responses to phytohormones. However, little is known about these genes in woody species, and so, we characterized the 30-member TIFY gene family of apple (Malus × domestica Borkh.). Synteny analysis indicated that segmental, tandem, and whole genome duplications have contri ...
- DOI:
- 10.1007/s11295-014-0808-z
- https://doi.org/10.1007/s11295-014-0808-z
54. Genome-wide identification and expression analysis of GRF genes regulating apple tree architecture
- Author:
- Liwei Zheng; Juanjuan Ma; Chunhui Song; Lizhi Zhang; Cai Gao; Dong Zhang; Na An; Jiangping Mao; Mingyu Han
- Source:
- Tree genetics & genomes 2018 v.14 no.4 pp. 54
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; benzyladenine; brassinolide; cultivars; databases; dwarfing; gene duplication; gene expression; genes; gibberellic acid; mutation; naphthaleneacetic acid; phylogeny; plant architecture; transcription (genetics); transcription factors; trees
- Abstract:
- ... Growth-regulating factor (GRF) proteins comprise a family of plant-specific transcription factors that play crucial roles in regulating plant architecture. However, information pertaining to the GRF gene family in apple (Malus × domestica) is limited. In the present study, 16 GRF family members were identified in the apple genome, and nine were predicted to be putative targets of apple microRNA396 ...
- DOI:
- 10.1007/s11295-018-1267-8
- https://doi.org/10.1007/s11295-018-1267-8
- Author:
- Yuan-Yuan Li; Dong Meng; Mingjun Li; Lailiang Cheng
- Source:
- Tree genetics & genomes 2016 v.12 no.4 pp. 82
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; basic-leucine zipper transcription factors; drought; fruiting; gene expression regulation; genes; growth and development; leaves; leucine zipper; models; plant growth; quantitative polymerase chain reaction; reverse transcriptase polymerase chain reaction; roots; salt stress; stress response; stress tolerance; transcription (genetics)
- Abstract:
- ... The basic leucine zipper (bZIP) family is one of the largest transcription factor (TF) families in plants, which play crucial roles in plant growth and development. bZIP proteins are involved in multiple biological processes, as well as responses to various biotic/abiotic stresses. Although genome-wide analysis of the bZIP gene family has been conducted in several plant species, only few comprehen ...
- DOI:
- 10.1007/s11295-016-1043-6
- https://doi.org/10.1007/s11295-016-1043-6
- Author:
- Huifeng Li; Qinglong Dong; Qiang Zhao; Kun Ran
- Source:
- Tree genetics & genomes 2019 v.15 no.3 pp. 45
- ISSN:
- 1614-2942
- Subject:
- Liliopsida; Malus domestica; apples; chromosome mapping; chromosomes; genes; mannitol; osmotic stress; phylogeny; plant growth; protein-protein interactions; reverse transcriptase polymerase chain reaction; sodium chloride; stress response; tissues; transcription factors
- Abstract:
- ... As plant-specific transcription factors, ovate family proteins (OFP) were involved in the regulation of plant growth, development, and stress response. Although OFP proteins have been reported in some species, little is known about their evolution, structure, expression levels under biological and abiotic stress, and interactions among OFP members in apple. In this study, 26 apple MdOFP genes were ...
- DOI:
- 10.1007/s11295-019-1354-5
- https://doi.org/10.1007/s11295-019-1354-5
- Author:
- Xu, Haiyan; Zhang, Wenna; Li, Maofu; Harada, Takeo; Han, Zhenhai; Li, Tianzhong
- Source:
- Tree genetics & genomes 2010 v.6 no.6 pp. 1013-1019
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; RNA transport; apples; gibberellic acid; hormones; messenger RNA; nutrients; scions; transgenes
- Abstract:
- ... The sieve tube in higher plants functions as infrastructure for long-distance transport of nutrients, photoassimilates, and growth regulators including hormones. Recently, it was revealed that some protein and RNA molecules also function as movable growth regulators in the sieve tube. In the case of the mRNA of gibberellic acid insensitive (GAI), the transport evidence was obtained through identif ...
- DOI:
- 10.1007/s11295-010-0309-7
- https://doi.org/10.1007/s11295-010-0309-7
- Author:
- Benjamin Orcheski; Susan Brown
- Source:
- Tree genetics & genomes 2017 v.13 no.1 pp. 9
- ISSN:
- 1614-2942
- Subject:
- Malus; abiotic stress; abscisic acid; apples; biosynthesis; chlorophyll; cotyledons; fruit trees; genes; genetic disorders; germination; high-throughput nucleotide sequencing; loss-of-function mutation; models; mortality; osmotolerance; photosynthesis; phylloquinone; seedlings; sorbitol; starvation; stress response
- Abstract:
- ... Pale green lethal (PGL) is a recessive genetic disorder of apple (Malus) characterized by severe chlorophyll deficiency and seedling lethality. Following germination, seedlings cannot photosynthesize and die at the cotyledon stage. We previously reported that the genetic and biochemical basis of PGL is due to a loss-of-function mutation in a gene required for the biosynthesis of phylloquinone (vit ...
- DOI:
- 10.1007/s11295-016-1097-5
- https://doi.org/10.1007/s11295-016-1097-5
- Author:
- Szankowski, Iris; Waidmann, Sascha; Degenhardt, Juliana; Patocchi, Andrea; Paris, Roberta; Silfverberg-Dilworth, Eve; Broggini, Giovanni; Gessler, Cesare
- Source:
- Tree genetics & genomes 2009 v.5 no.2 pp. 349-358
- ISSN:
- 1614-2942
- Subject:
- 5' untranslated regions; DNA; Malus floribunda; Venturia inaequalis; apples; cultivars; fungi; genes; introgression; orchards; transgenic plants
- Abstract:
- ... Apple scab, caused by the ascomycete Venturia inaequalis, is the most damaging fungal disease of commercial apple orchards. Functional scab resistance genes are present in some wild Malus species. The HcrVf2 gene, derived from the Vf-region of the wild apple Malus floribunda 821 and encoding a receptor-like protein, has proved to confer scab resistance in a transgenic susceptible cultivar. In orde ...
- DOI:
- 10.1007/s11295-008-0191-8
- https://doi.org/10.1007/s11295-008-0191-8
- Author:
- Thomas Wöhner; Erik Szentgyörgyi; Andreas Peil; Klaus Richter; Magda-Viola Hanke; Henryk Flachowsky
- Source:
- Tree genetics & genomes 2016 v.12 no.1 pp. 2
- ISSN:
- 1614-2942
- Subject:
- Erwinia amylovora; Malus baccata; Malus domestica; Malus prunifolia; alleles; apples; breeding; genotype; germplasm conservation; loci; microsatellite repeats; pathogens; sequence analysis; Korean Peninsula
- Abstract:
- ... Breeding for fire blight resistance is a major goal of nearly all apple breeding programs worldwide. Resources for resistance can be found in Malus wild species accession such as Malus ×robusta 5 (Mr5) which carries the FB_MR5 CC-NBS-LRR fire blight resistance gene. To study the occurrence of FB_MR5 in other genetic resources of Malus, a total of 394 wild species accessions of three international ...
- DOI:
- 10.1007/s11295-015-0962-y
- https://doi.org/10.1007/s11295-015-0962-y
- Author:
- Gleave, Andrew P.; Ampomah-Dwamena, Charles; Berthold, Susann; Dejnoprat, Supinya; Karunairetnam, Sakuntala; Nain, Bhawana; Wang, Yen-Yi; Crowhurst, Ross N.; MacDiarmid, Robin M.
- Source:
- Tree genetics & genomes 2008 v.4 no.2 pp. 343-358
- ISSN:
- 1614-2942
- Subject:
- proteins; messenger RNA; Arabidopsis; apples; flowering; rice; data collection; acids; expressed sequence tags; gene expression; microRNA; Malus domestica; fruiting; leaves
- Abstract:
- ... Microribonucleic acids (miRNAs) are small, non-coding RNAs that play important regulatory roles by down-regulating target transcripts in a sequence-specific manner. The miRBase Registry (Release 8.2) lists 732 miRNAs from flowering plant species, with the majority identified from Arabidopsis, rice and poplar where genome sequence is available. In the absence of genomic sequence and on the basis th ...
- DOI:
- 10.1007/s11295-007-0113-1
- https://doi.org/10.1007/s11295-007-0113-1
- Author:
- Shigeki Moriya; Hiroshi Iwanami; Takashi Haji; Kazuma Okada; Masahiko Yamada; Toshiya Yamamoto; Kazuyuki Abe
- Source:
- Tree genetics & genomes 2015 v.11 no.3 pp. 59
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; adventitious roots; apples; auxins; environmental factors; ethylene; genes; genetic variance; genotyping; hardwood; marker-assisted selection; phenotypic variation; plant cuttings; quantitative trait loci; rooting; rootstocks; transcription factors; vegetative propagation
- Abstract:
- ... Vegetative propagation enables the multiplication of plants that are genetically identical to the original. Hardwood cuttings have a low cost advantage and are used widely for the propagation of JM series apple rootstocks, which root well from hardwood cuttings. To breed new apple rootstocks with similarly high rooting capabilities, the development of a marker-assisted selection method is desirabl ...
- DOI:
- 10.1007/s11295-015-0883-9
- https://doi.org/10.1007/s11295-015-0883-9
- Author:
- Soriano, J.M.; Joshi, S.G.; van Kaauwen, M.; Noordijk, Y.; Groenwold, R.; Henken, B.; van de Weg, W.E.; Schouten, H.J.
- Source:
- Tree genetics & genomes 2009 v.5 no.3 pp. 475-482
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; Malus floribunda; Venturia inaequalis; apples; breeding; chromosome mapping; disease resistance; fungi; genes; genotype; linkage groups; pathogens; pedigree; races; virulence
- Abstract:
- ... Apple scab, caused by the fungal pathogen Venturia inaequalis, is one of the most devastating diseases for the apple growing in temperate zones with humid springs and summers. Breeding programs around the world have been able to identify several sources of resistance, the Vf from Malus floribunda 821 being the most frequently used. The appearance of two new races of V. inaequalis (races 6 and 7) i ...
- DOI:
- 10.1007/s11295-009-0201-5
- https://doi.org/10.1007/s11295-009-0201-5
- Author:
- Katrien Kenis; Johan Keulemans; Mark W. Davey
- Source:
- Tree genetics & genomes 2008 v.4 no.4 pp. 647-661
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; acidity; apples; breeding; chromosome mapping; cultivars; firmness; fruit quality; genetic markers; genotype; harvest date; inheritance (genetics); quantitative trait loci; variance
- Abstract:
- ... Breeding for fruit quality traits is complex due to the polygenic (quantitative) nature of the genetic control of these traits. Therefore, to improve the speed and efficiency of genotype selection, attention in recent years has focused on the identification of quantitative trait loci (QTLs) and molecular markers associated with these QTLs. However, despite the huge potential of molecular markers i ...
- DOI:
- 10.1007/s11295-008-0140-6
- https://doi.org/10.1007/s11295-008-0140-6
- Author:
- van Dyk, Maria M.; Soeker, Mogamat Khashief; Labuschagne, Iwan F.; Rees, David Jasper G.
- Source:
- Tree genetics & genomes 2010 v.6 no.3 pp. 489-502
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; adults; apples; asexual reproduction; bags; budbreak; climatic factors; cooling; crossing; cultivars; dormancy; expressed sequence tags; genetic background; leaves; microsatellite repeats; parents; quantitative trait loci; rootstocks; seedlings; spring; temperature; trees; South Africa
- Abstract:
- ... In the Western Cape region of South Africa, dormancy release and the onset of growth does not occur normally in apple (Malus x domestica Borkh.) trees during spring due to the mild winter conditions experienced and fluctuations in temperatures experienced during and between winters. In this region, the application of chemicals to induce the release of dormancy forms part of standard orchard manage ...
- DOI:
- 10.1007/s11295-009-0266-1
- https://doi.org/10.1007/s11295-009-0266-1
- Author:
- Elżbieta Kaja; Michał W. Szcześniak; Philip J. Jensen; Michael J. Axtell; Timothy McNellis; Izabela Makałowska
- Source:
- Tree genetics & genomes 2015 v.11 no.1 pp. 812
- ISSN:
- 1614-2942
- Subject:
- Erwinia amylovora; Malus domestica; RNA libraries; apples; disease resistance; gene expression regulation; genes; high-throughput nucleotide sequencing; microRNA; pathogens; proteins; quantitative polymerase chain reaction; reverse transcriptase polymerase chain reaction; stress response; trees; variance
- Abstract:
- ... MicroRNAs (miRNAs) are key players in multiple biological processes; therefore, analysis and characterization of these small regulatory RNAs is a critical step toward a better understanding of animal and plant biology. In apple (Malus domestica), 200 microRNAs are known, which most probably represent only a fraction of miRNAome diversity. As a result, more effort is required to better annotate miR ...
- DOI:
- 10.1007/s11295-014-0812-3
- https://doi.org/10.1007/s11295-014-0812-3
- Author:
- Michela Dall’Agata; G. Pagliarani; S. Padmarasu; M. Troggio; L. Bianco; E. Dapena; M. Miñarro; S. Aubourg; Y. Lespinasse; C. E. Durel; S. Tartarini
- Source:
- Tree genetics & genomes 2018 v.14 no.1 pp. 12
- ISSN:
- 1614-2942
- Subject:
- Dysaphis plantaginea; Malus domestica; apples; bacterial artificial chromosomes; breeding; chemical treatment; chromosome walking; clones; cultivars; genes; genetic markers; genomics; insect resistance; linkage groups; loci; pests
- Abstract:
- ... The cultivated apple is susceptible to several pests including the rosy apple aphid (RAA; Dysaphis plantaginea Passerini), control of which is mainly based on chemical treatments. A few cases of resistance to aphids have been described in apple germplasm resources, laying the basis for the development of new resistant cultivars by breeding. The cultivar ‘Florina’ is resistant to RAA, and recently, ...
- DOI:
- 10.1007/s11295-018-1227-3
- https://doi.org/10.1007/s11295-018-1227-3
- Author:
- Briana L. Gross; Adam D. Henk; Philip L. Forsline; Christopher M. Richards; Gayle M. Volk
- Source:
- Tree genetics & genomes 2012 v.8 no.6 pp. 1223-1235
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; gene flow; germplasm; hybrids; interspecific hybridization; wild relatives
- Abstract:
- ... Potential interspecific hybrids are usually identified in natural populations by their proximity to interbreeding species or their intermediate phenotypes; hybridization can then be confirmed by comparing the genetic makeup of putative hybrids to pure species. In contrast, detecting interspecific hybridization and misclassifications in ex situ collections can be difficult because fine-scale geogra ...
- DOI:
- 10.1007/s11295-012-0509-4
- https://doi.org/10.1007/s11295-012-0509-4
- Author:
- Jörg Vogt; Doreen Schiller; Detlef Ulrich; Wilfried Schwab; Frank Dunemann
- Source:
- Tree genetics & genomes 2013 v.9 no.6 pp. 1493-1511
- ISSN:
- 1614-2942
- Subject:
- vegetables; apples; alleles; phylogeny; odors; quantitative trait loci; jasmonic acid; esters; multigene family; leaves; crop production; cultivars; volatile compounds; chromosomes; linoleate 13S-lipoxygenase; flavor; Malus; hydroperoxides; Aphis pomi; fruits; oxylipins; nucleotide sequences; polyunsaturated fatty acids
- Abstract:
- ... Lipoxygenases (LOXs) are non-heme iron-containing enzymes that catalyse the dioxygenation of polyunsaturated fatty acids. The resulting hydroperoxides are further metabolized into biologically active oxylipins including jasmonic acid and green leaf volatiles (GLV) such as C6-aldehydes and C6-alcohols. LOXs are also known to play a decisive role in the production of volatiles that influence the fla ...
- DOI:
- 10.1007/s11295-013-0653-5
- https://doi.org/10.1007/s11295-013-0653-5
- Author:
- Haohao Li; Rui Li; Fengjia Qu; Jifang Yao; Yujin Hao; Xiaofei Wang; Chunxiang You
- Source:
- Tree genetics & genomes 2017 v.13 no.5 pp. 94
- ISSN:
- 1614-2942
- Subject:
- Arabidopsis; Malus domestica; abiotic stress; apples; callus; chromosomes; drought tolerance; genes; homeostasis; oxidative stress; phylogeny; proteins; stomatal movement; stress response; transgenic plants
- Abstract:
- ... RCD1 is a member of the plant-specific SRO protein family. Several SRO genes have been functionally identified in the regulation of abiotic stresses in Arabidopsis and other plant species. However, the function of SROs is largely unknown in apple (Malus×domestica). In this study, six MdSRO-encoding genes were isolated, categorized into two types and mapped to six chromosomes. The phylogenetic anal ...
- DOI:
- 10.1007/s11295-017-1175-3
- https://doi.org/10.1007/s11295-017-1175-3
- Author:
- M. R. Ahuja; M. Fladung
- Source:
- Tree genetics & genomes 2014 v.10 no.4 pp. 779-790
- ISSN:
- 1614-2942
- Subject:
- Agrobacterium; Castanea dentata; Mendelian inheritance; apples; crops; flowering; gene transfer; nucleases; plums; progeny; site-specific recombination; transgenes; trees
- Abstract:
- ... Transgene integration and inheritance have been investigated in a number of crop plants and few tree species. Transgene integration is predominantly a random process, whether mediated by Agrobacterium or particle bombardment. Depending on the genomic position of the integrated transgene and structure of the integration site as well as copy number of the transgene in the genome, its expression may ...
- DOI:
- 10.1007/s11295-014-0724-2
- https://doi.org/10.1007/s11295-014-0724-2
- Author:
- Feixiong Luo; John L. Norelli; Nicholas P. Howard; Michael Wisniewski; Henryk Flachowsky; Magda-Viola Hanke; Cameron Peace
- Source:
- Tree genetics & genomes 2020 v.16 no.2 pp. 28
- ISSN:
- 1614-2942
- Subject:
- DNA; Malus sieversii; alleles; apples; early flowering; fruit quality; genetically modified organisms; genomics; germplasm; introgression; marker-assisted selection; molds (fungi); plant genetics; progeny; resistance genes
- Abstract:
- ... Apple blue mold causes significant postharvest economic losses worldwide. A blue mold resistance locus, qM-Pe3.1, was previously identified on chromosome 3 of Malus sieversii PI 613981, a wild accession with inferior fruit quality. Introgression of the resistance allele into elite breeding germplasm is difficult and success of introgression and the effect of the PI 613981 genome on fruit quality c ...
- DOI:
- 10.1007/s11295-020-1419-5
- https://doi.org/10.1007/s11295-020-1419-5
73. Isolation and characterization of strong gene regulatory sequences from apple, Malus × domestica
- Author:
- Schaart, Jan G.; Tinnenbroek-Capel, Iris E. M.; Krens, Frans A.
- Source:
- Tree genetics & genomes 2011 v.7 no.1 pp. 135-142
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; gene expression; plant tissues; regulator genes; reporter genes; ribulose-bisphosphate carboxylase; terminator regions; tobacco; transgenes; transgenic plants
- Abstract:
- ... For the strong expression of genes in plant tissue, the availability of specific gene regulatory sequences is desired. We cloned promoter and terminator sequences of an apple (Malus x domestica) ribulose biphosphate carboxylase small subunit gene (MdRbcS), which is known for its high expression and used gus reporter gene expression to test the regulatory activity of the isolated promoter and termi ...
- DOI:
- 10.1007/s11295-010-0320-z
- https://doi.org/10.1007/s11295-010-0320-z
- Author:
- Zhao, Guiling; Dai, Hongyan; Chang, Linlin; Ma, Yue; Sun, Haiyue; He, Ping; Zhang, Zhihong
- Source:
- Tree genetics & genomes 2009 v.6 no.1 pp. 149-159
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; genetic markers; retrotransposons; terminal repeat sequences
- Abstract:
- ... Retrotransposon-based molecular markers are a powerful tool for mapping and diversity studies. The scarcity of retrotransposon long terminal repeat (LTR) sequences limits the application of retrotransposon-based molecular marker systems. Here, we isolated two novel complete Ty1-copia retrotransposons (CTcrm1 and CTcrm2) in apple using a genome walking strategy. The CTcrm retrotransposons are nearl ...
- DOI:
- 10.1007/s11295-009-0236-7
- https://doi.org/10.1007/s11295-009-0236-7
- Author:
- Toshi M. Foster; Amy E. Watson; Ben M. van Hooijdonk; Robert J. Schaffer
- Source:
- Tree genetics & genomes 2014 v.10 no.1 pp. 189-202
- ISSN:
- 1614-2942
- Subject:
- RNA; abiotic stress; abscisic acid; apples; bark; dwarfing; flowering; gene expression; gene expression regulation; genes; genotype; juvenility; rootstocks; scions; seasonal growth; shoots; trees; vegetative growth
- Abstract:
- ... The Malling 9 (M.9) dwarfing rootstock is widely used in apple breeding and commercial cultivation to shorten the juvenile period, reduce vegetative growth and increase flowering of the scion. A segment of M.9 stem (interstock) or M.9 bark grafted into a compound tree can cause significant dwarfing of the scion, suggesting that the dwarfing signal may be vascular derived. To better understand how ...
- DOI:
- 10.1007/s11295-013-0675-z
- https://doi.org/10.1007/s11295-013-0675-z
76. Linkage and association analysis of dihydrochalcones phloridzin, sieboldin, and trilobatin in Malus
- Author:
- Benjamin L. Gutierrez; Jie Arro; Gan-Yuan Zhong; Susan K. Brown
- Source:
- Tree genetics & genomes 2018 v.14 no.6 pp. 91
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; Malus prunifolia; apples; chromosome mapping; evolution; genome; germplasm conservation; interspecific hybridization; linkage groups; loci; males; models; nutritive value; phloridzin; physicochemical properties; progeny; quantitative trait loci
- Abstract:
- ... Dihydrochalcones (DHCs) are a distinctive characteristic of Malus species, with phloridzin as the major DHC in most Malus species, including cultivated apple. DHCs in apple have unique chemical properties with commercial and nutritional value and may yield important insights into the evolution and physiology of apple. A few species produce sieboldin and trilobatin instead of phloridzin, and inters ...
- DOI:
- 10.1007/s11295-018-1304-7
- https://doi.org/10.1007/s11295-018-1304-7
- Author:
- F. Costa; W. E. Van de Weg; S. Stella; L. Dondini; D. Pratesi; S. Musacchi; S. Sansavini
- Source:
- Tree genetics & genomes 2008 v.4 no.3 pp. 575-586
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; Pyrus communis; apples; depolymerization; disease resistance; enzymes; expansins; firmness; flowering; genes; microsatellite repeats; ontogeny; pears; quantitative trait loci; ripening; shelf life; texture
- Abstract:
- ... Fruit ripening can be considered as a complex set of biochemical and physiological changes occurring at the end of the developmental stage. Ripe fruit texture notably affects overall quality and consumer appreciation. Excessive softening limits shelf-life and storability, thereby increasing disease susceptibility and economic loss. Fruit softening is a process due to the depolymerisation of differ ...
- DOI:
- 10.1007/s11295-008-0133-5
- https://doi.org/10.1007/s11295-008-0133-5
- Author:
- Cova, Valentina; Paris, Roberta; Passerotti, Stella; Zini, Elena; Gessler, Cesare; Pertot, Ilaria; Loi, Nazia; Musetti, Rita; Komjanc, Matteo
- Source:
- Tree genetics & genomes 2010 v.6 no.3 pp. 389-403
- ISSN:
- 1614-2942
- Subject:
- Venturia inaequalis; acid treatment; apples; genotype; multigene family; pathogens; plasma membrane; protein kinases; proteins; salicylic acid; signal transduction; woody plants
- Abstract:
- ... The Malus-Venturia inaequalis interaction is the most studied plant-pathogen interaction involving a woody species. Besides the cloning of an apple scab resistance gene HcrVf2, several sequences have been recently identified that are modulated after pathogen recognition in Vf-resistant genotypes. Among these, there is a putative leucine-rich repeat receptor-like protein kinase from the apple scab- ...
- DOI:
- 10.1007/s11295-009-0257-2
- https://doi.org/10.1007/s11295-009-0257-2
- Author:
- Terrence J. Frett; Gregory L. Reighard; William R. Okie; Ksenija Gasic
- Source:
- Tree genetics & genomes 2014 v.10 no.2 pp. 367-381
- ISSN:
- 1614-2942
- Subject:
- Prunus persica; anthocyanins; apples; cherries; chromosome mapping; color; cultivars; genes; genetic distance; marker-assisted selection; peaches; phenotype; pigmentation; quantitative trait loci; single nucleotide polymorphism
- Abstract:
- ... Blush is an important trait for marketing peaches. The red skin pigmentation develops through the flavonoid and anthocyanin pathways, and both genetic and environmental stimuli, and their interaction, control the regulation of these pathways. The molecular basis of blush development in peach is yet to be understood. An F₂blush population (ZC²) derived from a cross between two peach cultivars with ...
- DOI:
- 10.1007/s11295-013-0692-y
- https://doi.org/10.1007/s11295-013-0692-y
- Author:
- Yanmin Zhu; Bruce H. Barritt
- Source:
- Tree genetics & genomes 2008 v.4 no.3 pp. 555-562
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; fruit trees; cultivars; ethylene production; genotype; genetic variation; plant breeding; marker-assisted selection
- Abstract:
- ... Fruit ethylene production genotypes for Md-ACS1 and Md-ACO1 were determined for 60 apple cultivars and 35 advanced breeding selections. Two alleles for each gene are commonly found in cultivated apple. Earlier studies showed that genotypes homozygous for the ACS1-2 allele produce less ethylene and have firmer fruit than ACS1-1/2 and ACS1-1/1 genotypes. ACO1 plays a minor role compared to ACS1, wit ...
- Handle:
- 10113/16481
- DOI:
- 10.1007/s11295-007-0131-z
- https://doi.org/10.1007/s11295-007-0131-z
81. MetaQTL analysis provides a compendium of genomic loci controlling fruit quality traits in apple
- Author:
- Fabrizio Costa
- Source:
- Tree genetics & genomes 2015 v.11 no.1 pp. 819
- ISSN:
- 1614-2942
- Subject:
- apples; color; confidence interval; data collection; firmness; fruit quality; genes; loci; quantitative trait loci; single nucleotide polymorphism; surveys
- Abstract:
- ... Fruit quality represents an important aspect of any fruit species, due to its economical importance and direct impact on consumers’ appreciation. In order to generate a compendium about the genomic intervals putatively involved in the control of the several fruit quality components, a Meta-quantitative trait loci (QTL) analysis was performed starting from a QTL mapping survey individually conducte ...
- DOI:
- 10.1007/s11295-014-0819-9
- https://doi.org/10.1007/s11295-014-0819-9
- Author:
- Frank Dunemann; Regina Gläss; Sabine Bartsch; Mohamed Ali Saad Eldin; Andreas Peil; Vincent G. M. Bus
- Source:
- Tree genetics & genomes 2012 v.8 no.5 pp. 1095-1109
- ISSN:
- 1614-2942
- Subject:
- Malus baccata; Venturia inaequalis; apples; cultivars; gene transfer; genes; genetic relationships; genotype; germplasm conservation; loci; marker-assisted selection; mining; molecular cloning; polymerase chain reaction; risk
- Abstract:
- ... Few complete genes belonging to the receptor-like protein class of plant resistance (R) genes (called HcrVf genes in Malus) have been cloned from apple cultivars. To date, the HcrVf2 gene from the Rvi6 locus of ‘Florina’, a derivative of Malus × floribunda 821, is the only cloned apple scab R gene with a proven function. The breakdown of the Rvi6 scab resistance in several apple growing regions ha ...
- DOI:
- 10.1007/s11295-012-0489-4
- https://doi.org/10.1007/s11295-012-0489-4
- Author:
- Yanmin Zhu; Ping Zheng; Vijaya Varanasi; Sungbong Shin; Dorrie Main; Eric Curry; James P. Mattheis
- Source:
- Tree genetics & genomes 2012 v.8 no.6 pp. 1389-1406
- ISSN:
- 1614-2942
- Subject:
- apples; auxins; cell walls; cortex; cultivars; ethylene production; firmness; gene expression regulation; hardness; metabolism; microarray technology; plant hormones; texture; transcription (genetics); transcriptomics; unigenes
- Abstract:
- ... Global transcriptional regulation during apple fruit maturation and associated texture changes were assessed by transcriptome profiling and systematic characterization of maturation progression of two cultivars, ‘Honeycrisp’ (HC) and ‘Cripps Pink’ (CP). A high-density long-oligo apple microarray consisting of duplex 190,135 cross-hybridization-free 50–70-mer isothermal probes, representing 23,997 ...
- DOI:
- 10.1007/s11295-012-0526-3
- https://doi.org/10.1007/s11295-012-0526-3
- Author:
- Benjamin Orcheski; Robert Parker; Susan Brown
- Source:
- Tree genetics & genomes 2015 v.11 no.6 pp. 131
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; alleles; amino acids; apples; biosynthesis; chlorophyll; cotyledons; genetic disorders; genetic techniques and protocols; germination; germplasm; heterozygosity; linkage groups; mortality; mutation; phylloquinone; seedlings; segregation distortion
- Abstract:
- ... Pale green lethal (PGL) is a recessive genetic disorder of apple (Malus) characterized by severe chlorophyll deficiency and seedling lethality. Following germination, seedlings cannot photosynthesize and do not survive beyond the cotyledon stage. PGL carriers are prevalent in cultivated apple (Malus × domestica Borkh.) germplasm, and a cross between two heterozygotes results in 25 % lethality. Thi ...
- DOI:
- 10.1007/s11295-015-0956-9
- CHORUS:
- 10.1007/s11295-015-0956-9
- https://doi.org/10.1007/s11295-015-0956-9
- Author:
- Myong-Suk Cho; Jin Hyeong Kim; Takayuki Yamada; Masayuki Maki; Seung-Chul Kim
- Source:
- Tree genetics & genomes 2021 v.17 no.5 pp. 41
- ISSN:
- 1614-2942
- Subject:
- Japan; Malus baccata; Malus toringo; apples; chloroplast genome; chloroplasts; conspecificity; genes; genomics; geographical distribution; horticulture; mutation; phylogeny; plant genetics; sympatry; China; Korean Peninsula
- Abstract:
- ... Malus baccata (L.) Borkh. and Malus toringo (Siebold) Siebold ex de Vriese of the genus Malus Mill. (Rosaceae) are wild crabapples occurring in temperate East Asia. Despite their horticultural importance as ornamental trees and the natural resources in apple breeding, their phylogenetic relationships have never been determined clearly owing to lack of resolution in previous studies. We characteriz ...
- DOI:
- 10.1007/s11295-021-01520-z
- https://doi.org/10.1007/s11295-021-01520-z
- Author:
- David Chagné; Chris Kirk; Claire Whitworth; Sylvia Erasmuson; Ross Bicknell; Daniel J. Sargent; Satish Kumar; Michela Troggio
- Source:
- Tree genetics & genomes 2015 v.11 no.5 pp. 94
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; aneuploidy; apples; chromosome aberrations; diploidy; evolution; flow cytometry; gene frequency; genome; genotype; germplasm; meiosis; single nucleotide polymorphism; tetraploidy; triploidy
- Abstract:
- ... Polyploidisation is a common mechanism underlying genome evolution in plants. Both polyploid and aneuploid individuals occur naturally at low frequency in diploid species because of unbalanced or unreduced gamete formation during meiosis. We evaluated the Illumina Infinium® II FruitBreedomics 20K apple single nucleotide polymorphism (SNP) array for its ability to detect polyploid and aneuploid ind ...
- DOI:
- 10.1007/s11295-015-0920-8
- https://doi.org/10.1007/s11295-015-0920-8
- Author:
- Feixiong Luo; Kate Evans; John L. Norelli; Zhiwu Zhang; Cameron Peace
- Source:
- Tree genetics & genomes 2020 v.16 no.1 pp. 21
- ISSN:
- 1614-2942
- Subject:
- DNA; alleles; apples; backcrossing; cultivars; disease resistance; fruit quality; genetic improvement; genetic markers; genetically modified organisms; genomics; germplasm; juvenility; phenotypic selection; plant genetics; probability; progeny
- Abstract:
- ... Apple industries suffer from major apple diseases because of widely planted susceptible cultivars. Developed disease-resistant cultivars that often carry only a single source of resistance are not expected to be durable over time. Cultivars with multiple sources of resistance are often commercially unacceptable due to unsatisfactory fruit quality alleles inherited from unimproved and improved pare ...
- DOI:
- 10.1007/s11295-020-1414-x
- https://doi.org/10.1007/s11295-020-1414-x
- Author:
- Mnejja, Mourad; Garcia-Mas, Jordi; Audergon, Jean-Marc; Arús, Pere
- Source:
- Tree genetics & genomes 2010 v.6 no.5 pp. 689-700
- ISSN:
- 1614-2942
- Subject:
- cultivars; microsatellite repeats; strawberries; apples; diploidy; peaches; Prunus domestica; DNA; expressed sequence tags; pears; almonds; crops; Prunus salicina; hexaploidy; apricots; genetic markers; cherries
- Abstract:
- ... A total of 145 microsatellite primer pairs from Prunus DNA sequences were studied for transferability in a set of eight cultivars from nine rosaceous species (almond, peach, apricot, Japanese plum, European plum, cherry, apple, pear, and strawberry), 25 each of almond genomic, peach genomic, peach expressed sequence tags (EST), and Japanese plum genomic, 22 of almond EST, and 23 of apricot (13 EST ...
- DOI:
- 10.1007/s11295-010-0284-z
- https://doi.org/10.1007/s11295-010-0284-z
- Author:
- Sooriyapathirana, Suneth S.; Khan, Amjad; Sebolt, Audrey M.; Wang, Dechun; Bushakra, Jill M.; Lin-Wang, Kui; Allan, Andrew C.; Gardiner, Susan E.; Chagné, David; Iezzoni, Amy F.
- Source:
- Tree genetics & genomes 2010 v.6 no.6 pp. 821-832
- ISSN:
- 1614-2942
- Subject:
- Arabidopsis; Prunus avium; apples; cherries; chromosome mapping; color; linkage groups; parents; progeny; quantitative trait loci; regulator genes
- Abstract:
- ... Sweet cherry (Prunus avium L.) skin and fruit colors vary widely due to differences in red and yellow pigment profiles. The two major market classes of sweet cherry represent the two color extremes, i.e., yellow skin with red blush and yellow flesh and dark mahogany skin with mahogany flesh. Yet, within these extremes, there is a continuum of skin and flesh color types. The genetic control of skin ...
- DOI:
- 10.1007/s11295-010-0294-x
- https://doi.org/10.1007/s11295-010-0294-x
- Author:
- Sibylle Stoeckli; Karsten Mody; Cesare Gessler; Andrea Patocchi; Mauro Jermini; Silvia Dorn
- Source:
- Tree genetics & genomes 2008 v.4 no.4 pp. 833-847
- ISSN:
- 1614-2942
- Subject:
- Aphis pomi; Dysaphis plantaginea; Malus domestica; alleles; amplified fragment length polymorphism; apples; chromosome mapping; climatic factors; cultivars; fruits; genotype; growth traits; heritability; insect pests; insecticides; integrated pest management; leaves; loci; microsatellite repeats; orchards; pedigree; plant growth; quantitative trait loci; shoots
- Abstract:
- ... The rosy apple aphid (Dysaphis plantaginea), the leaf-curling aphid (Dysaphis cf. devecta) and the green apple aphid (Aphis pomi) are widespread pest insects that reduce growth of leaves, fruits and shoots in apple (Malus × domestica). Aphid control in apple orchards is generally achieved by insecticides, but alternative management options like growing resistant cultivars are needed for a more sus ...
- DOI:
- 10.1007/s11295-008-0156-y
- https://doi.org/10.1007/s11295-008-0156-y
- Author:
- Shigeki Moriya; Hiroshi Iwanami; Takashi Haji; Kazuma Okada; Taku Shimizu; Koichi Suzaki; Naoko Kitamoto; Yuichi Katayose; Jianzhong Wu; Toshiya Yamamoto; Kazuyuki Abe
- Source:
- Tree genetics & genomes 2021 v.17 no.3 pp. 25
- ISSN:
- 1614-2942
- Subject:
- Agrobacterium radiobacter; Japan; Rhizobium rhizogenes; apples; bacterial artificial chromosomes; computer simulation; crown galls; disease resistance; peaches; plant genetics; prediction; quantitative traits; resistance genes
- Abstract:
- ... In apple (Malus spp.), crown gall disease, caused by the bacterial pathogens Rhizobium radiobacter (Ti) and R. rhizogenes (Ti), can be severe. To control the disease, breeding of apple rootstocks that exhibit crown gall resistance is a promising approach. In this study, we used a full-sib F₁ population derived from a ‘JM7’ (susceptible) × Sanashi 63 (resistant) cross to identify quantitative trait ...
- DOI:
- 10.1007/s11295-021-01508-9
- https://doi.org/10.1007/s11295-021-01508-9
- Author:
- Cunwu Zuo; Juan Mao; Zhongjian Chen; Mingyu Chu; Hu Duo; Baihong Chen
- Source:
- Tree genetics & genomes 2018 v.14 no.5 pp. 75
- ISSN:
- 1614-2942
- Subject:
- Valsa mali; abscisic acid; apples; auxins; biosynthesis; breeding; calcium; calcium signaling; cell walls; crop production; cultivars; gene expression regulation; gene ontology; growth and development; jasmonic acid; pathogenicity; pathogens; phloem; plant development; plant growth; plant response; resistance genes; sequence analysis; East Asia
- Abstract:
- ... Valsa canker caused by the necrotrophic pathogen Valsa mali (Vm) severely affects apple production in Eastern Asia. The molecular basis underlying the apple response to Vm infection is poorly understood. Hence, we performed RNA sequencing (RNA-seq) to investigate the dynamic gene expression profiles of a major apple cultivar, ‘Changfu No.2’, during Vm infection. Compared with the control (C), 104, ...
- DOI:
- 10.1007/s11295-018-1288-3
- https://doi.org/10.1007/s11295-018-1288-3
- Author:
- Norelli, John L.; Farrell, Robert E. Jr.; Bassett, Carole L.; Baldo, Angela M.; Lalli, Donna A.; Aldwinckle, Herb S.; Wisniewski, Michael E.
- Source:
- Tree genetics & genomes 2009 v.5 no.1 pp. 27-40
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; fruit trees; bacterial diseases of plants; Erwinia amylovora; plant pathogenic bacteria; complementary DNA; DNA libraries; expressed sequence tags; transcription (genetics); gene expression regulation; host-pathogen relationships
- Abstract:
- ... Fire blight, caused by the bacterium Erwinia amylovora, is a destructive disease of many tree and shrub species of the Rosaceae. Suppression subtractive cDNA hybridization (SSH) was used to identify genes that are differentially up- and down-regulated in apple (Malus x domestica) in response to challenge with E. amylovora. cDNA libraries were constructed from E. amylovora- and mock-challenged appl ...
- Handle:
- 10113/22586
- DOI:
- 10.1007/s11295-008-0164-y
- https://doi.org/10.1007/s11295-008-0164-y
- Author:
- Jensen, Philip J.; Makalowska, Izabela; Altman, Naomi; Fazio, Gennaro; Praul, Craig; Maximova, Siela N.; Crassweller, Robert M.; Travis, James W.; McNellis, Timothy W.
- Source:
- Tree genetics & genomes 2009 v.6 no.1 pp. 57-72
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; abiotic stress; apples; biotic stress; crossing; cultivars; disease resistance; gene expression; genes; microarray technology; phenotype; proteins; quantitative polymerase chain reaction; rootstocks; scions; stress tolerance; trees
- Abstract:
- ... Apple trees (Malus x domestica) do not reproduce true-to-type from seed. Therefore, desirable cultivars are clonally propagated by grafting vegetative material onto rootstocks. Although cloned cultivars are genetically identical, rootstocks influence horticulturally important cultivar traits, including tree size, disease resistance, and abiotic stress tolerance. Here, ‘Gala' scions were grafted to ...
- DOI:
- 10.1007/s11295-009-0228-7
- https://doi.org/10.1007/s11295-009-0228-7
- Author:
- Antonio Cabrera; Umesh R. Rosyara; Paolo De Franceschi; Audrey Sebolt; Suneth S. Sooriyapathirana; Elisabeth Dirlewanger; Jose Quero-Garcia; Mirko Schuster; Amy F. Iezzoni; Esther van der Knaap
- Source:
- Tree genetics & genomes 2012 v.8 no.2 pp. 237-247
- ISSN:
- 1614-2942
- Subject:
- Fragaria; Malus; Prunus avium; Prunus persica; alleles; apples; breeding; chromosome mapping; cultivars; genetic variation; germplasm; heterozygosity; landraces; parents; peaches; progeny; single nucleotide polymorphism; strawberries
- Abstract:
- ... The Rosaceae Conserved Orthologous Set (RosCOS) provides a gene-based genome-wide set of markers that have been used in comparative analyses of peach (Prunus persica), apple (Malus à domestica), and strawberry (Fragaria spp.). In order to extend the use of these RosCOS to sweet cherry (Prunus avium L.), we identified markers that are polymorphic in breeding germplasm. Ninety-five percent (595/627 ...
- DOI:
- 10.1007/s11295-011-0436-9
- https://doi.org/10.1007/s11295-011-0436-9
- Author:
- Jill M. Bushakra; Daniel J. Sargent; Antonio Cabrera; Ross Crowhurst; Elena Lopez Girona; Riccardo Velasco; V. Vaughan Symonds; Esther van der Knaap; Michela Troggio; Susan E. Gardiner; David Chagné
- Source:
- Tree genetics & genomes 2012 v.8 no.4 pp. 643-658
- ISSN:
- 1614-2942
- Subject:
- Fragaria vesca; Malus; apples; chromosome mapping; chromosome translocation; chromosomes; evolution; genome; linkage groups; nucleotide sequences; strawberries
- Abstract:
- ... Intertribal comparisons of genome synteny between phylogenetically distant genera in Rosaceae, such as Malus (apple) and Fragaria (strawberry), have previously been hampered by a lack of transferable markers that can be used as anchor points between genetic maps. The availability of conserved orthologous set (COS) markers recently developed for this family, coupled with the release of the Malusâ ...
- DOI:
- 10.1007/s11295-011-0450-y
- https://doi.org/10.1007/s11295-011-0450-y
- Author:
- Stoeckli, Sibylle; Mody, Karsten; Patocchi, Andrea; Kellerhals, Markus; Dorn, Silvia
- Source:
- Tree genetics & genomes 2009 v.5 no.1 pp. 257-267
- ISSN:
- 1614-2942
- Subject:
- Aculus schlechtendali; Malus domestica; amplified fragment length polymorphism; apples; chromosome mapping; chromosomes; cultivars; fungicides; genetic background; linkage groups; marker-assisted selection; microsatellite repeats; mites; pedigree; phenotypic variation; progeny; quantitative analysis; quantitative trait loci; random amplified polymorphic DNA technique
- Abstract:
- ... The aim of this study was to assess the genetic basis of rust mite (Aculus schlechtendali) resistance in apple (Malus x domestica). A. schlechtendali infestation of apple trees has increased as a consequence of reduced side effects of modern fungicides on rust mites. An analysis of quantitative trait loci (QTLs) was carried out using linkage map data available for F₁ progeny plants of the cultivar ...
- DOI:
- 10.1007/s11295-008-0186-5
- https://doi.org/10.1007/s11295-008-0186-5
- Author:
- Julia Halász; Attila Hegedűs; Zsuzsanna György; Éva Pállinger; Magdolna Tóth
- Source:
- Tree genetics & genomes 2011 v.7 no.6 pp. 1135-1145
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; alleles; apples; cultivars; flow cytometry; gene frequency; genotype; introgression; polymerase chain reaction; single nucleotide polymorphism
- Abstract:
- ... Apple exhibits self-incompatibility controlled by the multiallelic S-locus. Twenty-three old apple cultivars were S-genotyped using three different approaches (allele-specific polymerase chain reaction (PCR) + cleaved amplified polymorphic sequences (CAPS), consensus PCR + sequencing and consensus PCR + CAPS) to compare the robustness and reliability of these techniques and characterise genotypes ...
- DOI:
- 10.1007/s11295-011-0401-7
- https://doi.org/10.1007/s11295-011-0401-7
- Author:
- Judith Bowen; Hilary S. Ireland; Ross Crowhurst; Zhiwei Luo; Amy E. Watson; Toshi Foster; Nigel Gapper; Jim J. Giovanonni; James P. Mattheis; Chris Watkins; David Rudell; Jason W. Johnston; Robert J. Schaffer
- Source:
- Tree genetics & genomes 2014 v.10 no.3 pp. 751-759
- ISSN:
- 1614-2942
- Subject:
- Malus domestica; apples; data collection; essential genes; fruiting; gene expression; genomics; messenger RNA; phosphoprotein phosphatase; phytochrome; quantitative polymerase chain reaction; ubiquitination; variance
- Abstract:
- ... To accurately measure gene expression using PCR-based approaches, there is the need for reference genes that have low variance in expression (housekeeping genes) to normalise the data for RNA quantity and quality. For non-model species such as Malus x domestica (apples), previously, the selection of reference genes relied on using homology to reference genes in model species. In this study, a geno ...
- DOI:
- 10.1007/s11295-014-0720-6
- https://doi.org/10.1007/s11295-014-0720-6
- Author:
- Diogo Denardi Porto; Vítor da Silveira Falavigna; Rafael Augusto Arenhart; Pâmela Perini; Vanessa Buffon; Rafael Anzanello; Henrique Pessoa dos Santos; Flávio Bello Fialho; Paulo Ricardo Dias de Oliveira; Luís Fernando Revers
- Source:
- Tree genetics & genomes 2016 v.12 no.3 pp. 46
- ISSN:
- 1614-2942
- Subject:
- messenger RNA; buds; apples; loci; peaches; perennials; seeds; introns; pears; transcription (genetics); temperate zones; cold treatment; genomics; Malus domestica; dormancy; gene expression regulation; apricots
- Abstract:
- ... The molecular control of bud dormancy establishment and release is still not well understood, although some genes have already been demonstrated to play important roles in this process. The dormancy-associated MADS-box (DAM) genes were first identified in the peach EVERGROWING locus and are considered the main regulators of bud dormancy control. In this work, the apple (Malus × domestica Borkh.), ...
- DOI:
- 10.1007/s11295-016-1001-3
- https://doi.org/10.1007/s11295-016-1001-3