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You searched for: Publication year rev 7980-2020 Remove constraint Publication year rev: 7980-2020 Subject term Acidobacteria Remove constraint Subject term: Acidobacteria
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1. 16S rRNA analysis of electrogenic bacterial communities in microbial fuel cells developed from temperate soils

Author:
Luis Jimenez; Margarita Kulko; Ryan Kim; Theranda Jashari; Tina Choe
Source:
Bios 2020 v.91 no.1 pp. 9-20
ISSN:
0005-3155
Subject:
Acidobacteria; Actinobacteria; Chloroflexi; Firmicutes; Planctomycetes; Proteobacteria; anodes; bacterial communities; biofilm; cathodes; electricity generation; soil bacteria
Abstract:
... Bergen Community College (BCC) soils were used to generate mud suspensions to construct microbial fuel cells (MFCs) with the anode buried with the mud, while the cathode rested on top. MFCs incubated at 37°C showed more electrical output and electrogenic bacteria than those grown at 25°C. The most productive MFC generated a maximum of 80 microwatts with 1.67 × 10⁹ electrogenic microorganisms. 16S ...
DOI:
10.1893/BIOS-D-18-00006

2. A comprehensive assessment of microbiome diversity in Tenebrio molitor fed with polystyrene waste

Author:
Aneta K. Urbanek; Justyna Rybak; Magdalena Wróbel; Karol Leluk; Aleksandra M. Mirończuk
Source:
Environmental pollution 2020 v.262 pp. 114281
ISSN:
0269-7491
Subject:
Acidobacteria; Actinobacteria; Clostridia; Enterobacter; Enterococcus; Flavobacteria; Klebsiella; Lactococcus; Pseudomonas; Serratia; Tenebrio molitor; alpha-Proteobacteria; bacteria; biodegradability; bioplastics; breeding; carbon; high-throughput nucleotide sequencing; insect larvae; intestinal microorganisms; microbiome; packaging; polystyrenes; wastes
Abstract:
... Recently it was demonstrated that mealworm (Tenebrio molitor) larvae consume and biodegrade polystyrene. Thus, in this study a breeding investigation with various types of polystyrene was performed to follow the changes in the gut microbiome diversity. Polystyrene used for packaging purposes (PSp) and expanded polystyrene (EPS) were perceived as more favorable and attacked more frequently by mealw ...
DOI:
10.1016/j.envpol.2020.114281

3. A comprehensive survey on the horizontal and vertical distribution of heavy metals and microorganisms in soils of a Pb/Zn smelter

Author:
Shuzhen Li; Bi Zhao; Ming Jin; Liang Hu; Hui Zhong; Zhiguo He
Source:
Journal of hazardous materials 2020 v.400 pp. 123255
ISSN:
0304-3894
Subject:
Acidobacteria; Actinobacteria; Bacteroidetes; Firmicutes; Proteobacteria; antioxidant activity; biotransformation; heavy metals; metagenomics; microorganisms; pH; pollution; prediction; risk; spatial distribution; surveys; topsoil
Abstract:
... Smelter emissions have brought serious heavy metal contamination. Comprehensive surveys of spatial heavy metal and microorganism distribution in soils of smelters aera are still limited. In this study, the horizontal and vertical profiles of heavy metals as well as microorganisms of 80 samples from 5 soil layers of 16 sites in a Pb/Zn smelter were studied. Pollution index indicated the pollution l ...
DOI:
10.1016/j.jhazmat.2020.123255

4. A formulated diet improved digestive capacity, immune function and intestinal microbiota structure of juvenile hybrid grouper (Epinephelus fuscoguttatus ♀ × Epinephelus lanceolatus ♂) when compared with chilled trash fish

Author:
Guanlin Ye; Xiaohui Dong; Qihui Yang; Shuyan Chi; Hongyu Liu; Haitao Zhang; Beiping Tan; Shuang Zhang
Source:
Aquaculture 2020 v.523 pp. 735230
ISSN:
0044-8486
Subject:
Acidobacteria; Epinephelus fuscoguttatus; Epinephelus lanceolatus; Flavobacterium; Lachnospiraceae; bacterial communities; bioeconomics; blood serum; complement; diet; enzyme activity; feeds; females; gene expression; grouper; high-throughput nucleotide sequencing; hybrids; immune response; immunoglobulin M; interferon-gamma; interleukin-10; interleukin-1beta; interleukin-6; intestinal microorganisms; intestines; juveniles; lysozyme; major histocompatibility complex; males; metabolism; pepsin; specific growth rate; survival rate; trypsin; tumor necrosis factors; weight gain
Abstract:
... The effects of two diets on the growth, intestinal microbiota, digestive enzymes, immunity-related enzymes and gene expression were assessed in the juvenile hybrid grouper (Epinephelus fuscoguttatus ♀ × Epinephelus lanceolatus ♂). Hybrid grouper were fed either a formulated diet (FM group) or chilled trash fish (CTF group). Following a 10-week feeding study, the results showed that the final weigh ...
DOI:
10.1016/j.aquaculture.2020.735230

5. A new sea surface temperature proxy based on bacterial 3-hydroxy fatty acids

Author:
Yi Yang; Canfa Wang; James A. Bendle; Xiaoguo Yu; Chao Gao; Xiaoxia Lü; Xiaoyan Ruan; Ruicheng Wang; Shucheng Xie
Source:
Organic geochemistry 2020 v.141 pp. 103975
ISSN:
0146-6380
Subject:
Acidobacteria; Bacteroidetes; Gram-negative bacteria; Proteobacteria; Verrucomicrobia; bacterial communities; fatty acids; genomics; marine environment; marine sediments; pH; paleoclimatology; ribosomal RNA; sequence analysis; soil; surface water temperature; East China Sea; Pacific Ocean
Abstract:
... 3-Hydroxy fatty acids (3-OH-FAs), derived from Gram-negative bacterial outer membranes, have received recent attention for their potential as new terrestrial pH and temperature proxies for palaeoclimate studies. However, it is not known whether 3-OH-FA based proxies can be developed and applied to the marine environment. Here we analyze 3-OH-FAs from a latitudinal transect of marine surface sedime ...
DOI:
10.1016/j.orggeochem.2020.103975

6. Alkaline aided thermophiles pretreatment of waste activated sludge to increase short chain fatty acids production: Microbial community evolution by alkaline on hydrolysis and fermentation

Author:
Chun-Xue Yang; Shuai Zhao; Ze-Chong Guo; Wen-Zong Liu; Ling Wang; Shao-Peng Yu; Bao-Ling Liu; Xue Cong
Source:
Environmental research 2020 v.186 pp. 109503
ISSN:
0013-9351
Subject:
Acidobacteria; Caloramator; acidification; activated sludge; chemical oxygen demand; fermentation; heat tolerance; hydrolysis; microbial communities; proteins; proteolysis; short chain fatty acids; thermophilic bacteria
Abstract:
... Adding alkaline into an anaerobic waste activated sludge (WAS) fermentation with thermophilic bacteria pretreatment could efficiently improve short-chain fatty acids (SCFAs) accumulation to 3550 ± 120 mg COD/L. The acidification rate in combined test was 21.2%, while that was 15.6% and 10.7% in sole thermophilic bacteria pretreatment and control tests respectively. Four distinct groups of microbes ...
DOI:
10.1016/j.envres.2020.109503

7. Analysis of endophytic and rhizosphere bacterial diversity and function in the endangered plant Paeonia ludlowii

Author:
Yazhou Lu; Erhao Zhang; Mingsheng Hong; Xiu Yin; Hao Cai; Lei Yuan; Fang Yuan; Lianqiang Li; Kentian Zhao; Xiaozhong Lan
Source:
Archives of microbiology 2020 v.202 no.7 pp. 1717-1728
ISSN:
0302-8933
Subject:
Acidobacteria; Cyanobacteria; Paeonia; Proteobacteria; ecological function; economic valuation; endophytes; medicinal plants; metagenomics; plant growth; rhizosphere; soil; traditional medicine; China
Abstract:
... Paeonia ludlowii is indigenous to Tibet and has an important ecological and economic value in China. In Tibet, P. ludlowii has been used in folk medicine with relative success. Plant microbial endophytes play an important role in plant growth, health and ecological function. The diversity of endophytic bacteria associated with P. ludlowii remains poorly understood. In this study, the structure of ...
DOI:
10.1007/s00203-020-01882-3

8. Antibiotic resistance genes and bacterial community dynamics in the seawater environment of Dapeng Cove, South China

Author:
Wenjun Li; Haochang Su; Yucheng Cao; Linglong Wang; Xiaojuan Hu; Wujie Xu; Yu Xu; Zhuojia Li; Guoliang Wen
Source:
Science of the total environment 2020 v.723 pp. 138027
ISSN:
0048-9697
Subject:
Acidobacteria; Bacteroidetes; Chloroflexi; Cyanobacteria; Planctomycetes; Proteobacteria; anthropogenic activities; antibiotic resistance; antibiotic resistance genes; bacterial communities; cage culture; chemical oxygen demand; chloramphenicol; community structure; environmental factors; integrases; lakes; pathogens; quantitative polymerase chain reaction; rivers; seawater; sediments; sewage; total suspended solids; tourism; wastewater; China
Abstract:
... In recent years, the propagation of antibiotic resistance genes (ARGs) and increased antibiotic resistance in pathogens have gained serious attention. Numerous reports have investigated the influence of domestic sewage discharge, medical wastewater and aquaculture wastewater on rivers and lakes, while the dynamics of ARGs in seawater and the relationships between ARGs, bacterial community structur ...
DOI:
10.1016/j.scitotenv.2020.138027

9. Arbuscular mycorrhizal fungi biofertilizer improves American ginseng (Panax quinquefolius L.) growth under the continuous cropping regime

Author:
Ning Liu; Cai Shao; Hai Sun; Zhengbo Liu; Yiming Guan; Lianju Wu; Linlin Zhang; Xiaoxi Pan; Zhenghai Zhang; Yayu Zhang; Bing Zhang
Source:
Geoderma 2020 v.363 pp. 114155
ISSN:
0016-7061
Subject:
Acidobacteria; Bacillus (bacteria); Fusarium oxysporum; Fusarium solani; Mortierella; Panax quinquefolius; Streptomyces; ammonium; bacteria; biofertilizers; continuous cropping; growth retardation; mycorrhizal fungi; nitrates; nitrogen; nutrient availability; nutrient deficiencies; phosphorus; plant growth; potassium; probiotics; rhizosphere; root rot; roots; shoots; soil nutrients; soil pH; soil-borne diseases
Abstract:
... Continuous cropping of American ginseng (Panax quinquefolius L.) is often associated with the scarcity or unavailability of soil nutrients and an imbalance of rhizosphere microbiota, resulting in low yield and poor plant quality. Inoculation with arbuscular mycorrhizal fungi (AMF) improves plant growth and production by facilitating nutrient acquisition and by modifying the abundance and diversity ...
DOI:
10.1016/j.geoderma.2019.114155

10. Artificial soil aeration increases soil bacterial diversity and tomato root performance under greenhouse conditions

Author:
Yuan Li; Wenquan Niu; Mingzhi Zhang; Jingwei Wang; Zhenxing Zhang
Source:
Land degradation & development 2020 v.31 no.12 pp. 1443-1461
ISSN:
1085-3278
Subject:
Acidobacteria; Geobacteraceae; Halanaerobiaceae; aeration; bacterial communities; enzyme activity; gamma-Proteobacteria; greenhouses; land degradation; microirrigation; plant growth; rhizosphere; roots; soil bacteria; soil enzymes; surface area; tomatoes
Abstract:
... Soil aeration can enhance soil enzyme activity and plant growth. These effects may be caused by variations in soil microbial diversity and plant root development. However, little is known about the responses of soil microbial composition, structure, and diversity and plant root development to artificial soil aeration. The aims of this study were to examine the composition, structure, and diversity ...
DOI:
10.1002/ldr.3560

11. Assessing the impact of source water on tap water bacterial communities in 46 drinking water supply systems in China

Author:
Ziming Han; Wei An; Min Yang; Yu Zhang
Source:
Water research 2020 v.172 pp. 115469
ISSN:
0043-1354
Subject:
Acidobacteria; Actinobacteria; Bacteroidetes; Chloroflexi; Cyanobacteria; Firmicutes; Planctomycetes; Verrucomicrobia; bacterial communities; biomarkers; delta-Proteobacteria; geographical distribution; microbiome; research; tap water; variance; water; water purification; water supply; China
Abstract:
... Drinking water purification and distribution processes shape the bacterial community in tap water; however, this study calls attention to the impact of source water on tap water bacterial community. Herein, paired source and tap water samples were collected from 46 drinking water supply systems in different watersheds across China, and high-throughput sequencing delineated that bacterial richness ...
DOI:
10.1016/j.watres.2020.115469

12. Association of microbiota in the stomach of Sinanodonta woodiana and its cultured soil

Author:
Kai Tan; Can Xu; Chengxing Long
Source:
3 Biotech 2020 v.10 no.7 pp. 319
ISSN:
2190-572X
Subject:
Acidobacteria; Anodonta woodiana; Bacteroidetes; Burkholderia; Cupriavidus; Cyanobacteria; Firmicutes; Fusobacteria; Sphingomonas; aquaculture; bacterial communities; dominant species; freshwater; genes; microorganisms; nutrition; soil; stomach
Abstract:
... The current study aimed to investigate the association of microbial characteristics in the stomach of Sinanodonta woodiana (S. woodiana) and its cultured soil. S. woodiana stomach and its cultured soil were collected in winter 2019. The V3 + V4 regions of the 16S rRNA gene were sequenced to detect microbial diversity. The differences in the dominant species between S. woodiana and soil were also d ...
DOI:
10.1007/s13205-020-02313-2

13. Bacillus subtilis H2 modulates immune response, fat metabolism and bacterial flora in the gut of grass carp (Ctenopharyngodon idellus)

Author:
Fei Shi; Yingjuan Zi; Zhijie Lu; Fenglin Li; Minxuan Yang; Fanbin Zhan; Yanan Li; Jun Li; Lijuan Zhao; Li Lin; Zhendong Qin
Source:
Fish & shellfish immunology 2020 v.106 pp. 8-20
ISSN:
1050-4648
Subject:
Acidobacteria; Actinobacteria; Aeromonas hydrophila; Bacillus subtilis; Bacteroidetes; Ctenopharyngodon idella; Fusobacteria; Shewanella; aquaculture; bacteria; fish; immune response; interleukin-11; interleukin-4; intestinal microorganisms; intestines; lipid metabolism; lipids; sequence analysis; shellfish; transcriptomics
Abstract:
... Functional ingredients such as Bacillus subtilis are used in aquaculture to improve fish condition, modulate microbiota and promote a healthy intestinal system. However, the underlying mechanisms of grass carp treated with B. subtilis are not fully characterized. This study investigated the gut microbes of grass carp after treated with B. subtilis H2 (10⁶ CFU/mL) and Aeromonas hydrophila (10⁶ CFU/ ...
DOI:
10.1016/j.fsi.2020.06.061

14. Bacterial Communities Associated with the Biofilms Formed in High-Altitude Brackish Water Pangong Tso Located in the Himalayan Plateau

Author:
Diptaraj S. Chaudhari; Dhiraj P. Dhotre; Kunal Jani; Avinash Sharma; Yadvinder Singh; Yogesh S. Shouche; Praveen Rahi
Source:
Current microbiology 2020 v.77 no.12 pp. 4072-4084
ISSN:
0343-8651
Subject:
Acidobacteria; Actinobacteria; Bacteroidetes; Cyanobacteria; Deinococcus-Thermus; Firmicutes; Planctomycetes; Proteobacteria; Verrucomicrobia; altitude; bacterial communities; biofilm; biosynthesis; brackish water; carbon dioxide fixation; community structure; dicarboxylic acids; genes; lakes; microbiology; photosynthesis; prediction; saprophytes; secondary metabolites; sediments; species diversity; China; India
Abstract:
... Pangong Tso is a long and narrow lake situated at an altitude of ~ 4266 m amsl in the Himalayan Plateau on the side of the India/China border. Biofilm has been observed in a small area near the shore of Pangong Tso. Bacterial communities of the lake sediment, water and biofilms were studied using amplicon sequencing of V3-V4 region of the 16S rRNA gene. The standard QIIME pipeline was used for ana ...
DOI:
10.1007/s00284-020-02244-4

15. Bacterial Communities of Regressive Spots in Ombrotrophic Bogs: Structure and Functions

Author:
T. G. Dobrovolskaya; A. V. Golovchenko; E. N. Yurchenko; A. V. Yakushev; N. A. Manucharova; L. V. Lysak; N. V. Kostina
Source:
Microbiology 2020 v.89 no.1 pp. 107-114
ISSN:
0026-2617
Subject:
Acidobacteria; Bacilli; Chromobacterium; Chryseobacterium; Pseudomonas; Stenotrophomonas; Verrucomicrobia; algae; bacteria; bacterial communities; biomass; bogs; dry season; fungi; mycelium; nitrogen fixation; peat; polymers; ribosomal RNA; sequence analysis; wet season
Abstract:
... This research analyses the structure and functions of bacterial communities of regressive spots in ombrotrophic bogs. Algal biomass was found to predominate in the biomass structure of regressive spots, while fungal mycelial biomass predominated in the layers of non-regressive ombrotrophic bog peat. A number of bacteria in regressive spots determined by direct counts was three to seven times highe ...
DOI:
10.1134/S0026261720010063

16. Bacterial Community Structure of Pinus Thunbergii Naturally Infected by the Nematode Bursaphelenchus Xylophilus

Author:
Yang Ma; Zhao-Lei Qu; Bing Liu; Jia-Jin Tan; Fred O. Asiegbu; Hui Sun
Source:
Microorganisms 2020 v.8 no.2 pp. -
ISSN:
2076-2607
Subject:
Acidobacteria; Actinobacteria; Bacteroidetes; Burkholderiales; Bursaphelenchus xylophilus; Firmicutes; Pinus thunbergii; Planctomycetes; Rhizobiales; bacterial communities; community structure; computer software; conifers; phylogeny; soil; trees; vascular wilt; Eurasia
Abstract:
... Pine wilt disease (PWD) caused by the nematode Bursaphelenchusxylophilus is a devastating disease in conifer forests in Eurasia. However, information on the effect of PWD on the host microbial community is limited. In this study, the bacterial community structure and potential function in the needles, roots, and soil of diseased pine were studied under field conditions using Illumina MiSeq coupled ...
DOI:
10.3390/microorganisms8020307

17. Bacterial Community in Soils Following Century-Long Application of Organic or Inorganic Fertilizers under Continuous Winter Wheat Cultivation

Author:
Xiufen Li; Shiping Deng; William R. Raun; Yan Wang; Ying Teng
Source:
Agronomy 2020 v.10 no.10 pp. -
ISSN:
2073-4395
Subject:
Acidobacteria; Chloroflexi; Cyanobacteria; Gemmatimonadetes; Proteobacteria; Triticum aestivum; bacterial communities; biogeochemical cycles; community structure; crop production; fertilizer application; mineral fertilizers; nitrates; organic matter; soil bacteria; soil pH; winter wheat
Abstract:
... Fertilization is one of the most common agricultural practices to achieve high yield. Although microbes play a critical role in nutrient cycling and organic matter decomposition, knowledge of the long-term responses of the soil bacterial community to organic and inorganic fertilizers is still limited. This study was conducted to evaluate the effects of century-long organic (manure), inorganic (NPK ...
DOI:
10.3390/agronomy10101497

18. Bacterial Diversity Controls Transformation of Wastewater-Derived Organic Contaminants in River-Simulating Flumes

Author:
Malte Posselt; Jonas Mechelke; Cyrus Rutere; Claudia Coll; Anna Jaeger; Muhammad Raza; Karin Meinikmann; Stefan Krause; Anna Sobek; Jörg Lewandowski; Marcus A. Horn; Juliane Hollender; Jonathan P. Benskin
Source:
Environmental science & technology 2020 v.54 no.9 pp. 5467-5479
ISSN:
1520-5851
Subject:
Acidobacteria; Flavobacterium; Nocardioides; Pseudomonadaceae; Sphingomonadaceae; Xanthomonadaceae; biodegradation; biuret; fluoxetine; half life; hyporheic zone; metformin; quantitative polymerase chain reaction; sediments; surface water; wastewater treatment
Abstract:
... Hyporheic zones are the water-saturated flow-through subsurfaces of rivers which are characterized by the simultaneous occurrence of multiple physical, biological, and chemical processes. Two factors playing a role in the hyporheic attenuation of organic contaminants are sediment bedforms (a major driver of hyporheic exchange) and the composition of the sediment microbial community. How these fact ...
DOI:
10.1021/acs.est.9b06928

19. Bacterial Succession in Salt Marsh Soils Along a Short-term Invasion Chronosequence of Spartina alterniflora in the Yellow River Estuary, China

Author:
Guangliang Zhang; Junhong Bai; Qingqing Zhao; Jia Jia; Wei Wang; Xin Wang
Source:
Microbial ecology 2020 v.79 no.3 pp. 644-661
ISSN:
0095-3628
Subject:
Acidobacteria; Bacteroidetes; Chloroflexi; Gemmatimonadetes; Proteobacteria; Spartina alterniflora; ammonium; bacterial communities; biogeochemistry; chronosequences; coasts; community structure; correspondence analysis; dissolved organic carbon; ecological function; ecological invasion; ecological succession; edaphic factors; estuaries; genes; high-throughput nucleotide sequencing; introduced plants; invasive species; magnesium; multidimensional scaling; nitrates; potassium; ribosomal RNA; salt marsh soils; salt marshes; soil bacteria; soil nutrients; soil organic matter; soil pH; soil physical properties; total nitrogen; variance; China; Yellow River
Abstract:
... As an exotic plant species, Spartina alterniflora seriously threatens native ecosystem function in Chinese coastal regions. Unveiling the dynamics of soil bacteria community during its invasion is essential for a better understanding of related biogeochemical processes, while the shift in soil bacterial community over invasive time remains unclear. A short-term chronosequence was identified to ass ...
DOI:
10.1007/s00248-019-01430-7

20. Bacterial and Archaeal Communities within an Ultraoligotrophic, High-altitude Lake in the Pre-Himalayas of the Qinghai-Tibet Plateau

Author:
Rong Wang; Rui Han; Qifu Long; Xiang Gao; Jiangwa Xing; Guoping Shen; Derui Zhu
Source:
Indian journal of microbiology 2020 v.60 no.3 pp. 363-373
ISSN:
0046-8991
Subject:
Acidobacteria; Actinobacteria; Bacteroidetes; Chloroflexi; Euryarchaeota; Firmicutes; Gemmatimonadetes; Planctomycetes; Puma; Rhodoferax; Thaumarchaeota; Verrucomicrobia; altitude; freshwater lakes; genes; microbiology; nitrification; photoheterotrophs; China
Abstract:
... Puma Yumco Lake (PYL) is an ultraoligotrophic freshwater lake that sits an altitude of 5030 m within the Qinghai-Tibet Plateau of China. The bacterial and archaeal diversity of the lake remains poorly understood, despite their potential to inform on biogeochemical cycling and environment-microbial associations in these unique environments. Here, the bacterial and archaeal communities of PYL were i ...
DOI:
10.1007/s12088-020-00881-8