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You searched for: Publication year rev 7981-2019 Remove constraint Publication year rev: 7981-2019 Subject term microsatellite repeats Remove constraint Subject term: microsatellite repeats Text availability Citation in PubAg Remove constraint Text availability: Citation in PubAg
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1. A Combined Approach Using ISSR and Volatile Compound Analysis for Assessment of Genetic and Phytochemical Diversity in Zingiber zerumbet (L.) from Eastern India

Author:
Biswabhusan Dash; Asit Ray; Ambika Sahoo; Basudeba Kar; Tuhin Chatterjee; Tarun Halder; Pratap Chandra Panda; Jeetendranath Patnaik; Biswajit Ghosh; Sanghamitra Nayak
Source:
Journal of essential oil-bearing plants 2019 v.22 no.1 pp. 31-49
ISSN:
0976-5026
Subject:
Zingiber zerumbet; arithmetics; camphene; camphor; cineole; climatic factors; cluster analysis; essential oils; gas chromatography-mass spectrometry; genetic variation; genotype; germplasm; microsatellite repeats; oils; principal component analysis; rhizomes; volatile compounds; India
Abstract:
... Essential oil of twenty-five germplasms of Zingiber zerumbet from different accessions of Eastern India were analysed using Gas Chromatography-Mass Spectroscopy (GC/MS). A total of 29 constituents were identified representing between 72.45-98.93% of total area. Zerumbone content was found to be in a range of 60.1-79.59% for the tested rhizomes. Acc. Haroa (W.B) was found to contain highest amount ...
DOI:
10.1080/0972060X.2019.1596840

2. A Complete Transcriptional Landscape Analysis of Pinus elliottii Engelm. Using Third-Generation Sequencing and Comparative Analysis in the Pinus Phylogeny

Author:
Shu Diao; Xianying Ding; Qifu Luan; Jingmin Jiang
Source:
Forests 2019 v.10 no.11 pp. -
ISSN:
1999-4907
Subject:
Pinus elliottii; alternative splicing; breeding; databases; genes; genetic improvement; messenger RNA; metabolism; microsatellite repeats; non-coding RNA; phylogeny; planting; transcription (genetics); transcriptome; China
Abstract:
... The planting of Pinus elliottii Engelm. has now reached close to three million ha in China. Molecular breeding as part of the improvement program for P. elliottii in southern China has been carried out in recent years. Third-generation sequencing (Pacbio sequencing technology, TGS) was used to obtain the exome of P. elliottii for molecular breeding. A total of 35.8 Gb clean reads were generated us ...
DOI:
10.3390/f10110942

3. A Genetic Assessment of Parentage in the Blackspot Sergeant Damselfish, Abudefduf sordidus (Pisces: Pomacentridae)

Author:
Lisa Kerr Lobel; Devin M. Drown; Paul H. Barber; Phillip S. Lobel
Source:
Fishes 2019 v.4 no.4 pp. 0-53
ISSN:
2410-3888
Subject:
Abudefduf; alloparental behavior; atolls; males; marine fish; microsatellite repeats; nests; parasitism; parentage; polyandry; polygyny; progeny; reproductive behavior; Pacific Ocean
Abstract:
... Microsatellite markers were used to investigate the reproductive behavior of the damselfish Abudefduf sordidus at Johnston Atoll, Central Pacific Ocean. Genetic results indicated that ten males maintained guardianship over their nest territories for up to nine nest cycles during a 3.5 month period. Genotypes of 1025 offspring sampled from 68 nests (composed of 129 clutches) were consistent with 95 ...
DOI:
10.3390/fishes4040053

4. A Microsatellite Analysis Used to Identify Global Pathways of Movement of Phytophthora cinnamomi and the Likely Sources of Wildland Infestations in California and Mexico

Author:
María Socorro Serrano; Todd Osmundson; Alejandra Almaraz-Sánchez; Peter J. P. Croucher; Tedmund Swiecki; Dionicio Alvarado-Rosales; Matteo Garbelotto
Source:
Phytopathology 2019 v.109 no.9 pp. 1577-1593
ISSN:
0031-949X
Subject:
Phytophthora cinnamomi; agricultural products; genetic markers; genetic variation; genotype; host range; hosts; invasive species; microsatellite repeats; plant pathogens; wildland; California; Mexico
Abstract:
... The genetic structure of a sample of isolates of the oomycete plant pathogen Phytophthora cinnamomi from natural and agricultural outbreaks and the long-distance movement of individual genotypes were studied using four microsatellite markers to genotype 159 isolates of Californian, Mexican, and worldwide origins. Allelic profiles identified 75 multilocus genotypes. A STRUCTURE analysis placed them ...
DOI:
10.1094/PHYTO-03-19-0102-R

5. A Wandering Black Bear (Ursus americanus, Pallas 1780) in the Sierra Gorda Biosphere Reserve, Queretaro

Author:
Carlos A. López González; M. Gabriela Camargo-Aguilera; Krisly Uuh Saucedo; Nalleli E. Lara Díaz
Source:
American midland naturalist 2019 v.182 no.2 pp. 252-259
ISSN:
0003-0031
Subject:
Ursus americanus; conservation areas; genetic markers; microsatellite repeats; Mexico
Abstract:
... Black bear distribution and dispersal in Mexico are uncertain. Here we document the occurrence of a black bear in the Sierra Gorda Biosphere Reserve in the Mexican State of Queretaro. We assessed its population membership using microsatellites genetic markers and conclude the individual came from the Nuevo Leon population, which is approximately 200 km north of the study area. ...
DOI:
10.1674/0003-0031-182.2.252

6. A battle of the sexes? sex ratio and performance at small scales in dioecious Mercurialis perennis

Author:
Tanja Pfeiffer; Leander Schmidt; Anna M. Roschanski; Martin Schnittler
Source:
Acta oecologica 2019 pp. -
ISSN:
1146-609X
Subject:
Mercurialis perennis; clones; dioecy; ecological differentiation; females; flowering; genotyping; leaves; males; microsatellite repeats; nitrogen; old-growth forests; photosynthesis; resource allocation; sex ratio; sexual dimorphism; sexual reproduction; shade; shoots; spring; stolons; trees; woodlands; Germany
Abstract:
... Mercurialis perennis is a dioecious clonal woodland herb. Its male-biased shoot sex ratio may result from differential selection (with skewed genet sex ratio) and/or differential performance (fairly even genet sex ratio but skewed shoot sex ratio since male clones grow more vigorously or have a higher flowering propensity). To test both scenarios, a total of 1024 shoots were mapped and excavated i ...
DOI:
10.1016/j.actao.2019.103462

7. A carnivores’ oasis? An isolated fisher (Pekania pennanti) population provides insight on persistence of a metapopulation

Author:
Michael K. Lucid; Andrew Rankin; Jack Sullivan; Lacy Robinson; Shannon Ehlers; Sam Cushman
Source:
Conservation genetics 2019 v.20 no.3 pp. 585-596
ISSN:
1566-0621
Subject:
DNA; cameras; carnivores; effective population size; forests; genetic variation; heterozygosity; humans; inbreeding coefficient; landscapes; microsatellite repeats; mountains; oases; planning; surveys; viability; winter; Idaho; Rocky Mountain region
Abstract:
... Landscape level species assessments are rarely available to inform conservation planning. Recent advances in multi-taxa survey techniques, however, have made them more obtainable by improving efficiency of collecting species occurrence data and genetic samples. Here, we used a multi-taxa survey technique to provide a landscape level portrait of fisher (Pekania pennanti) population status in a port ...
DOI:
10.1007/s10592-019-01160-w

8. A comparative assessment of diversity of greater yam (Dioscorea alata) in China

Author:
Wenqiang Wu; Chong Chen; Qing Zhang; Jatoi Zaheer Ahmed; Yun Xu; Xiaolong Huang; Jun Xie; Wei Xia; Dongyi Huang
Source:
Scientia horticulturae 2019 v.243 pp. 116-124
ISSN:
0304-4238
Subject:
Dioscorea alata; chromosome number; chromosomes; cultivars; expressed sequence tags; flow cytometry; genetic similarity; genetic variation; genotype; microsatellite repeats; mixoploidy; phenotype; phenotypic variation; ploidy; quantitative traits; yams; China
Abstract:
... Dioscorea alata is a species of yam that is widely cultivated throughout the world, including China. Nevertheless, there is very limited knowledge on this type of yam diversity in China. In the present study, we assessed the genetic diversity of Chinese greater yam by analyzing their morphology, genotype, chromosome and ploidy. 142 cultivated greater yams were collected from eight geographical reg ...
DOI:
10.1016/j.scienta.2018.08.016

9. A comparative survey of microsatellites among wild and domestic cat provides valuable resources for marker development

Author:
Azram Tahoor; Jamal Ahmad Khan; Sahil Mahfooz
Source:
Molecular biology reports 2019 v.46 no.3 pp. 3025-3033
ISSN:
0301-4851
Subject:
Acinonyx jubatus; Panthera tigris; cats; endangered species; genetic variation; genomics; microsatellite repeats; population structure; surveys
Abstract:
... Information on the level and distribution of genetic variation is important for conservation plan of captive population of an endangered species such as tiger and cheetah. We assayed the frequency of microsatellites in the genomic and genic sequences of wild cats (Panthera tigris, Acinonyx jubatus) and compared it with the domestic cat (Felis catus). Frequency, relative abundance and density of mi ...
DOI:
10.1007/s11033-019-04739-1

10. A comparison of genetic stability in tea [Camellia sinensis (L.) Kuntze] plantlets derived from callus with plantlets from long-term in vitro propagation

Author:
Lidiia Samarina; Maya Gvasaliya; Natalia Koninskaya; Ruslan Rakhmangulov; Alexander Efremov; Natalia Kiselyova; Alexey Ryndin; Magda-Viola Hanke
Source:
Plant cell, tissue, and organ culture 2019 v.138 no.3 pp. 467-474
ISSN:
0167-6857
Subject:
Camellia sinensis; DNA; aneuploidy; callus; cultivars; flow cytometry; genetic distance; genetic stability; micropropagation; microsatellite repeats; nuclear genome; plantlets; tea
Abstract:
... Morphological variation, genotypic stability and genetic distances among micropropagated tea [Camellia sinensis (L.) Kuntze] cv. ‘Kolkhida’ plantlets after 7 years of propagation in vitro and among plantlets regenerated from callus were compared. Fifteen individuals, randomly chosen amongst a set of 100 plantlets regenerated from callus, and ten individuals, randomly chosen from a set of 100 micro ...
DOI:
10.1007/s11240-019-01642-2

11. A continent-scale study of the social structure and phylogeography of the bent-wing bat, Miniopterus schreibersii (Mammalia: Chiroptera), using new microsatellite data

Author:
Kanat Gürün; Andrzej Furman; Javier Juste; Maria J. Ramos Pereira; Jorge M. Palmeirim; Sebastien J. Puechmaille; Pavel Hulva; Primoz Presetnik; Daniela Hamidovic; Carlos Ibáñez; Ahmet Karataş; Benjamin Allegrini; Panagiotis Georgiakakis; Dino Scaravelli; Marcel Uhrin; Haris Nicolaou; Mounir R. Abi-Said; Zoltan L. Nagy; Suren Gazaryan; Raşit Bilgin
Source:
Journal of mammalogy 2019 v.100 no.6 pp. 1865-1878
ISSN:
0022-2372
Subject:
Miniopterus schreibersii; Palearctic region; Turkey (country); cytochrome b; genes; mammalogy; microsatellite repeats; mitochondria; mitochondrial DNA; phylogeography; refuge habitats; social structure; Caucasus region; Central European region; Middle East; Northern Africa
Abstract:
... Miniopterus schreibersii is a cave-dwelling bat species with a wide distribution in the western Palearctic spanning southern and central Europe, North Africa, Anatolia, the Middle East, and the Caucasus. We investigated the social structure and its effects on the genetic makeup of this species, using 10 nuclear microsatellite markers and a partial fragment of the mitochondrial cytochrome b gene. S ...
DOI:
10.1093/jmammal/gyz153

12. A core set of microsatellite loci for yellow-throated marten, Martes flavigula: a case of inferences of family relationships

Author:
Seon-Mi Lee; Hea Chang Moon; Hye Sook Jeon; Eui-Geun Song; Donggul Woo; Junghwa An; Mu-Yeong Lee
Source:
Genes & genomics 2019 v.41 no.12 pp. 1457-1465
ISSN:
1976-9571
Subject:
Martes flavigula; deciduous forests; family relations; genetic markers; high-throughput nucleotide sequencing; kinship; loci; microsatellite repeats; pedigree; population genetics; population structure; predators; probability; South Korea
Abstract:
... BACKGROUND: Microsatellite markers are an ideal molecular marker for population genetic studies such as population structure, pedigree, and kinship. The yellow-throated marten (Martes flavigula) is widely distributed in coniferous and deciduous forests of eastern Asia and plays the role of an indicator and umbrella species in South Korea, given the absence of top predators such as tiger and leopar ...
DOI:
10.1007/s13258-019-00869-9

13. A digital camera as an alternative tool for estimating soil salinity and soil surface roughness

Author:
L. Xu; C.L. Zheng; Z.C. Wang; M.J. Nyongesah
Source:
Geoderma 2019 v.341 pp. 68-75
ISSN:
0016-7061
Subject:
agricultural land; cameras; color; data collection; least squares; microsatellite repeats; models; photographs; salt content; soil color; soil salinity; soil salts; surface roughness; wastelands; watersheds; China
Abstract:
... Determining soil salt content (SSC) and soil surface roughness (SSR) rapidly and simply is important for various environmental and agricultural applications. Recently, increasing attention has been focused on the color analysis to detect soil properties. Based on the fact that soil attributes affect soil color, this study investigated the feasibility of utilizing digital camera observations as an ...
DOI:
10.1016/j.geoderma.2019.01.028

14. A family study to examine clonal diversity in unisexual salamanders (genus Ambystoma)

Author:
James P. Bogart
Source:
Genome 2019 v.62 no.8 pp. 549-561
ISSN:
1480-3321
Subject:
Ambystoma; clonal variation; eggs; females; genome; gynogenesis; haploidy; loci; microsatellite repeats; mothers; mutation; natural selection; paternity; progeny; reproductive system; salamanders and newts; spermatozoa; zygote
Abstract:
... Unisexual Ambystoma are the oldest known unisexual vertebrates and comprise a lineage of eastern North American all female salamanders that reproduce by stealing sperm from as many as five normally bisexual congeneric species. The sperm may be used to only stimulate egg development by gynogenesis but can be incorporated in the zygote to elevate the ploidy level or to replace one of the female’s ha ...
DOI:
10.1139/gen-2019-0034

15. A few main parents contributed to the traditional grapevine cultivar assortment in north-western Italy, as revealed by microsatellites and single-nucleotide polymorphisms

Author:
S. Raimondi; P. Ruffa; P. Boccacci; S. Abba; A. Schneider
Source:
Acta horticulturae 2019 v. no.1248 pp. 295-300
ISSN:
0567-7572
Subject:
Vitis vinifera; domestication; economic valuation; farmers; genetic markers; genotype; kinship; loci; marketing; microsatellite repeats; parentage; parents; pedigree; piedmont; plant breeding; progeny; single nucleotide polymorphism; viticulture; wine grapes; wines; Central European region; Italy
Abstract:
... Studies on parentage and kinship of traditional Vitis vinifera grape cultivars allow light to be shed on the likely natural breeding at the basis of the assortment evolution of cultivated grapevines in a particular area over several centuries. They therefore contribute to our understanding of the process of domestication and local development of viticulture through farmer selection and allow us to ...
DOI:
10.17660/ActaHortic.2019.1248.42

16. A full-length transcriptome of Sepia esculenta using a combination of single-molecule long-read (SMRT) and Illumina sequencing

Author:
Jinyong Zhang; Changlin Liu; Muchun He; Zilong Xiang; Yanan Yin; Shufang Liu; ZhiMeng Zhuang
Source:
Marine genomics 2019 v.43 pp. 54-57
ISSN:
1874-7787
Subject:
Sepia; animal ovaries; brain; databases; developmental stages; genomics; messenger RNA; microsatellite repeats; muscles; overfishing; reproduction; sequence analysis; spawning; transcriptome
Abstract:
... As an economically important cephalopods species, wild-caught Sepia esculenta fishery has suffered a server decline due to over-fishing and ocean environmental damage. To restore this seriously declining fishery resource, we should understand the genetic foundation and molecular mechanism of spawning, reproduction and mortal of golden cuttlefish. In this study, we generated the full-length transcr ...
DOI:
10.1016/j.margen.2018.08.008

17. A genetic analysis of the European hedgehog (Erinaceus europaeus): an applicative case study to support its eradication from Pianosa Island (Tuscan Archipelago)

Author:
Alessio Iannucci; Nicola Baccetti; Francesca Giannini; Camilla Gotti; Mariella Baratti
Source:
Conservation genetics 2019 v.20 no.2 pp. 395-402
ISSN:
1566-0621
Subject:
Erinaceus europaeus; European Union; biocenosis; biodiversity; case studies; ecosystems; gene pool; genetic analysis; genetic variation; humans; islands; microsatellite repeats; mitochondrial DNA; mitochondrial genes; Italy; Mediterranean region; Sardinia
Abstract:
... The introduction of allochthonous species represents a serious threat for the native gene pools and ecosystem biodiversity. The effect is particularly disastrous for insular biocoenoses, such as in the Tuscan archipelago, one of the most important biodiversity hotspot in the Mediterranean area. The EU tool LIFE + has funded an eradication project involving a set of allochthonous species on Pianosa ...
DOI:
10.1007/s10592-018-1078-3

18. A genetic and morphological survey to trace the origin of Melipona beecheii (Apidae: Meliponini) from Cuba

Author:
William de Jesús May-Itzá; Walberto Lóriga Peña; Pilar De la Rúa; José Javier G. Quezada-Eúan
Source:
Apidologie 2019 v.50 no.6 pp. 859-870
ISSN:
0044-8435
Subject:
Melipona beecheii; genetic similarity; genetic variation; microsatellite repeats; morphometry; stingless bees; surveys; Caribbean; Costa Rica; Cuba; Mexico
Abstract:
... The stingless bee Melipona beecheii is extensively distributed across Mexico and Central America and the only Melipona found in the Greater Antilles. The aim of this work was to establish possible continental affinities of M. beecheii from the Antilles. We compared populations from the main island (Cuba) with two clearly separated genetic lineages of M. beecheii on mainland, namely the Yucatán pen ...
DOI:
10.1007/s13592-019-00696-7

19. A high-density genetic map and QTL mapping on growth and latex yield-related traits in Hevea brasiliensis Müll.Arg

Author:
Zewei An; Yanhong Zhao; Xiaofei Zhang; Xiao Huang; Yanshi Hu; Han Cheng; Xiaolong Li; Huasun Huang
Source:
Industrial crops and products 2019 v.132 pp. 440-448
ISSN:
0926-6690
Subject:
DNA shuffling; Hevea brasiliensis; developmental stages; genetic distance; genotyping; industrial crops; latex; linkage groups; microsatellite repeats; phenotypic variation; progeny; quantitative trait loci; rubber; single nucleotide polymorphism; stem elongation
Abstract:
... Hevea brasiliensis Müll.Arg., the rubber tree, is an important industrial crop, which is the major source of nature rubber. Recently, Simple Sequence Repeat (SSR)- and Single Nucleotide Polymorphism (SNP)-based genetic maps have been reported, however further trait-related markers are needed for efficient molecular breeding in rubber tree. In this study, a total of 206 F1 progeny derived from a cr ...
DOI:
10.1016/j.indcrop.2019.03.002

20. A longitudinal quantitative trait locus mapping of chicken growth traits

Author:
Tatsuhiko Goto; Akira Ishikawa; Masahide Nishibori; Masaoki Tsudzuki
Source:
Molecular genetics and genomics 2019 v.294 no.1 pp. 243-252
ISSN:
1617-4615
Subject:
White Leghorn; alleles; autosomes; body weight; chickens; developmental stages; eggs; epistasis; females; genetic markers; growth traits; loci; meat; microsatellite repeats; phenotype; quantitative trait loci
Abstract:
... Since the growth traits of chickens are largely related to the production of meat and eggs, it is definitely important to understand genetic basis of growth traits. Although many quantitative trait loci (QTLs) that affect growth traits have recently been reported in chickens, little is known about genetic architecture of growth traits across all growth stages. Therefore, we conducted a longitudina ...
DOI:
10.1007/s00438-018-1501-y