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1. A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution

Author:
Everts-van der Wind, A.; Larkin, D.M.; Green, C.A.; Elliott, J.S.; Olmstead, C.A.; Chiu, R.; Schein, J.E.; Marra, M.A.; Womack, J.E.; Lewin, H.A.
Source:
Proceedings of the National Academy of Sciences of the United States of America 2005 v.102 no.51 pp. 18526-18531
ISSN:
0027-8424
Subject:
cattle; humans; chromosome mapping; genome; genomics; genetic markers; bacterial artificial chromosomes; centromeres; telomeres
Abstract:
... Approximately 3,000 cattle bacterial artificial chromosome (BAC)-end sequences were added to the Illinois-Texas 5,000-rad RH (RH, radiation hybrid) map. The BAC-end sequences selected for mapping are approximately equal to 1 Mbp apart on the human chromosomes as determined by blastn analysis. The map has 3,484 ordered markers, of which 3,204 are anchored in the human genome. Two hundred-and-one ho ...
DOI:
10.1073/pnas.0509285102
PubMed:
16339895
PubMed Central:
PMC1317968

2. An Asian origin for a 10,000-year-old domesticated plant in the Americas

Author:
Erickson, D.L.; Smith, B.D.; Clarke, A.C.; Sandweiss, D.H.; Tuross, N.
Source:
Proceedings of the National Academy of Sciences of the United States of America 2005 v.102 no.51 pp. 18315-18320
ISSN:
0027-8424
Subject:
landraces; chloroplast DNA; plant morphology; genotype; provenance; domestication; radiocarbon dating; Lagenaria siceraria; genetic markers; single nucleotide polymorphism; United States; Mexico; Peru
Abstract:
... New genetic and archaeological approaches have substantially improved our understanding of the transition to agriculture, a major turning point in human history that began 10,000-5,000 years ago with the independent domestication of plants and animals in eight world regions. In the Americas, however, understanding the initial domestication of New World species has long been complicated by the earl ...
DOI:
10.1073/pnas.0509279102
PubMed:
16352716
PubMed Central:
PMC1311910

3. Analysis of genomic sequences from peanut (Arachis hypogaea)

Author:
Jayashree B.; Ferguson, M.; Ilut, D.; Doyle, J.; Crouch, J.H.
Source:
Electronic Journal of Biotechnology 2005 v.8 no.3
ISSN:
0717-3458
Subject:
Arabidopsis thaliana; microsatellite repeats; peanuts; sequence alignment; genetic code; genome; Arachis hypogaea; genetic markers

4. AFLP analysis of genetic variability among Stylosanthes guianensis accessions resistant and susceptible to the stylo anthracnose

Author:
Jiang, C.S.; Ma, X.R.; Zhou, D.M.; Zhang, Y.Z.
Source:
Plant breeding 2005 v.124 no.6 pp. 595-598
ISSN:
0179-9541
Subject:
germplasm; Glomerella cingulata; amplified fragment length polymorphism; cluster analysis; forage legumes; Stylosanthes guianensis; genotype; disease resistance; plant pathogenic fungi; plant genetic resources; anthracnose; genetic markers
Abstract:
... Stylosanthes guianensis, belonging to the genus Stylosanthes, is one of the most important tropical forage legumes and is native to South and Central America and Africa. Anthracnose, caused by the fungus Colletotrichum gloeosporioides (Penz.) Sacc., is a major constraint to the extensive use of Stylosanthes as tropical forage. Forty-two accessions of S. guianensis were assessed with amplified frag ...
DOI:
10.1111/j.1439-0523.2005.01168.x

5. Agrobacterium-mediated transformation of the ectomycorrhizal symbiont Laccaria bicolor S238N

Author:
Kemppainen, Minna; Circosta, Ariana; Tagu, Denis; Martin, Francis; Pardo, AlejandroG.
Source:
Mycorrhiza 2005 v.16 no.1 pp. 19-22
ISSN:
0940-6360
Subject:
ectomycorrhizae; genetic transformation; plant breeding; gene transfer; insertional mutagenesis; mycorrhizal fungi; plant nutrition; hygromycin B; antibiotic resistance; Agrobacterium radiobacter; Agaricus bisporus; transgenic plants; transgenes; gene expression; Laccaria bicolor; mycelium; genetic markers; Escherichia coli
Abstract:
... The development of an efficient transformation system is required to alter the expression of symbiosis-regulated genes and to develop insertional mutagenesis in the ectomycorrhizal basidiomycete Laccaria bicolor S238N. Vegetative mycelium of this fungus was transformed by Agrobacterium tumefaciens-mediated gene transfer. The selection marker was the hygromycin resistance gene of Escherichia coli ( ...
DOI:
10.1007/s00572-005-0008-7
PubMed:
16133248

6. Allele-specific CAPS markers based on point mutations in resistance alleles at the pvr1 locus encoding eIF4E in Capsicum

Author:
Yeam, Inhwa; Kang, Byoung-Cheorl; Lindeman, Wouter; Frantz, James D.; Faber, Nanne; Jahn, Molly M.
Source:
Theoretical and applied genetics 2005 v.112 no.1 pp. 178-186
ISSN:
0040-5752
Subject:
Capsicum annuum; hot peppers; Capsicum chinense; genetic markers; alleles; point mutation; loci; single nucleotide polymorphism; disease resistance; Tobacco etch virus; Potato virus Y; Pepper mottle virus
Abstract:
... Marker-assisted selection has been widely implemented in crop breeding and can be especially useful in cases where the traits of interest show recessive or polygenic inheritance and/or are difficult or impossible to select directly. Most indirect selection is based on DNA polymorphism linked to the target trait, resulting in error when the polymorphism recombines away from the mutation responsible ...
DOI:
10.1007/s00122-005-0120-2
PubMed:
16283234

7. Amplified fragment length polymorphism analysis and internal transcribed spacer and coxII sequences reveal a species boundary within Pythium irregulare

Author:
Garzon, C.D.; Geiser, D.M.; Moorman, G.W.
Source:
Phytopathology 2005 v.95 no.12 pp. 1489-1498
ISSN:
0031-949X
Subject:
crops; Pythium irregulare; plant pathogenic fungi; pathogenicity; pathotypes; genetic variation; internal transcribed spacers; amplified fragment length polymorphism; diagnostic techniques; genetic markers; DNA fingerprinting; United States
Abstract:
... Pythium irregulare is a plant-pathogenic oomycete that causes significant damage to a variety of crops, including ornamentals and vegetables. Morphological as well as molecular studies have reported high levels of genetic diversity within P. irregulare sensu lato which has raised the question as to whether it is a single species or is actually a complex of morphologically similar (cryptic) species ...
DOI:
10.1094/PHYTO-95-1489
PubMed:
18943561

8. An alternative to radiation hybrid mapping for large-scale genome analysis in barley

Author:
Masoudi-Nejad, Ali; Nasuda, Shuhei; Bihoreau, Marie-Therese; Waugh, Robbie; Endo, Takashi Ryu
Source:
Molecular genetics and genomics 2005 v.274 no.6 pp. 589-594
ISSN:
1617-4615
Subject:
microsatellite repeats; barley; amplified fragment length polymorphism; intergeneric hybridization; loci; Hordeum vulgare; wheat; chromosome addition; Triticum aestivum; physical chromosome mapping; genetic markers
Abstract:
... The presence of a monosomic gametocidal chromosome (GC) in a barley chromosome addition line of common wheat generates structural aberrations in the barley chromosome as well as in the wheat chromosomes of gametes lacking the GC. A collection of structurally aberrant barley chromosomes is analogous to a panel of radiation hybrid (RH) mapping and is valuable for high-throughput physical mapping. We ...
DOI:
10.1007/s00438-005-0052-1
PubMed:
16231150

9. Analysis of quantitative trait loci associated with leaflet types in two recombinant inbred lines of soybean

Author:
Kim, H.K.; Kang, S.T.; Suh, D.Y.
Source:
Plant breeding 2005 v.124 no.6 pp. 582-589
ISSN:
0179-9541
Subject:
Glycine max; soybeans; leaves; plant morphology; quantitative trait loci; leaf area; dimensions; length; width; microsatellite repeats; genetic markers; agronomic traits; seeds; weight; chromosome mapping
Abstract:
... Leaf area, length and width affect the photosynthetic capability of a plant and so increasing the photosynthetic rate per unit leaf area may improve seed yield in soybean. In this study, simple sequence repeat (SSR) markers were used to identify the genomic regions significantly associated with the quantitative trait locus (QTL) that controls length, width and the length/width ratio of the termina ...
DOI:
10.1111/j.1439-0523.2005.01152.x

10. A QTL for early heading in wheat cultivar Suwon 92

Author:
Xu, X.; Bai, G.; Carver, B.F.; Shaner, G.E.
Source:
Euphytica 2005 v.146 no.3 pp. 233
ISSN:
0014-2336
Subject:
Triticum aestivum; wheat; cultivars; quantitative trait loci; heading; phenology; chromosome mapping; genetic markers; amplified fragment length polymorphism; phenotypic variation
Abstract:
... Heading date is an important trait that determines wheat adaptation to environments. A recombinant inbred line (RIL) population derived from CI 13227 x Suwon 92 was employed to tag the quantitative trait locus (QTL) for early heading in Suwon 92. This population was phenotyped for heading date in 1994, 1995, and 1997, and analyzed with AFLP and SSR markers. Two AFLP markers (XGCTG.CGCT118 and XGCT ...
Handle:
10113/9941
DOI:
10.1007/s10681-005-9017-z

11. Assignment of immune-related genes to the channel catfish, Ictalurus punctatus, genetic map

Author:
Karsi, A.; Wolters, W.R.; Waldbieser, G.C.
Source:
Animal genetics 2005 v.36 no.6 pp. 502
ISSN:
0268-9146
Subject:
Ictalurus punctatus; freshwater fish; chromosome mapping; genes; immune system; linkage (genetics); microsatellite repeats; genetic markers; genetic polymorphism; nucleotide sequences
Abstract:
... Eighteen new genes, adenosine A1 receptor (ADORA1), complement component 4-beta (C4b), complement component 8-beta (C8b), chemokine ligand 19 (CCL19), chemokine ligand 21 (CCL21), chemokine ligand 25 (CCL25), chemokine receptor 2 (CCR2), chemokine receptor 5 (CCR5), chemokine receptor 4 (CCR4), chemokine receptor 7 (CCR7), chemokine receptor 9 (CCR9), interleukin 1-beta (IL1B), integrin II-beta (I ...
Handle:
10113/8575
PubMed:
16293124

12. Cell lines and plants obtained after protoplast fusions of Rosa+Rosa, Rosa+Prunus and Rosa+Rubus

Author:
Squirrell, J.; Mandegaran, Z.; Yokoya, K.; Roberts, A.V.; Mottley, J.
Source:
Euphytica 2005 v.146 no.3 pp. 223-231
ISSN:
0014-2336
Subject:
Prunus avium; protoplasts; cultivars; plant breeding; protoplast fusion; random amplified polymorphic DNA technique; intergeneric hybridization; karyotyping; Rubus; Prunus pseudocerasus; plant morphology; callus culture; in vitro regeneration; genetic markers; Rosa
Abstract:
... Protoplasts of three Rosa cultivars were fused with each other, with protoplasts of Prunus `Colt' and with protoplasts of Rubus laciniatus, using polyethylene glycol 4000 as a fusogen. Protoplasts of Prunus were incapable of cell division and those of Rosa and Rubus were disabled by treatments with metabolic inhibitors, either iodoacetate (IOA) or rhodamine 6-G (R6G). Parental protoplasts were the ...
DOI:
10.1007/s10681-005-9011-5

13. Characterization and evaluation of microsatellite loci in European hazelnut (Corylus avellana L.) and their transferability to other Corylus species

Author:
Boccacci, P.; Akkak, A.; Bassil, N.V.; Mehlenbacher, S.A.; Botta, R.
Source:
Molecular ecology notes 2005 v.5 no.4 pp. 934
ISSN:
1471-8278
Subject:
Corylus avellana; Corylus; hazelnuts; microsatellite repeats; genetic markers; loci; nucleotide sequences; polymerase chain reaction; DNA primers; heterozygosity; alleles
Abstract:
... In this work, 18 microsatellite loci were developed in the European hazelnut (Corylus avellana L.) using three enriched genomic libraries. They were evaluated on a set of 20 accessions of this species on the basis of number of alleles (mean: 7.1), expected heterozygosity (mean: 0.67), power of discrimination (mean: 0.77) and polymorphism information content (mean: 0.64). Cross-species transferabil ...
Handle:
10113/8110
DOI:
10.1111/j.1471-8286.2005.01121.x

14. Characterization of eight microsatellite loci in the maize stalk borer Busseola fusca Fuller, 1901 (Lepidoptera: Noctuidae)

Author:
Faure, N.; Silvain, J.F.
Source:
Molecular ecology notes 2005 v.5 no.4 pp. 846-848
ISSN:
1471-8278
Subject:
microsatellite repeats; insect pests; alleles; loci; DNA primers; polymerase chain reaction; heterozygosity; Busseola fusca; genetic polymorphism; genetic markers; Sub-Saharan Africa
DOI:
10.1111/j.1471-8286.2005.01084.x

15. Characterization of eight polymorphic microsatellites in endangered willow Salix hukaoana

Author:
Kikuchi, S.; Suzuki, W.; Ban, N.; Kanazashi, A.; Yoshimaru, H.
Source:
Molecular ecology notes 2005 v.5 no.4 pp. 869-870
ISSN:
1471-8278
Subject:
microsatellite repeats; endangered species; alleles; loci; DNA primers; polymerase chain reaction; heterozygosity; Salix; genetic markers; Japan
DOI:
10.1111/j.1471-8286.2005.01098.x

16. Characterization of newly developed microsatellite loci in the stemmed yellow violet, Viola pubescens (Violaceae)

Author:
Culley, T.M.
Source:
Molecular ecology notes 2005 v.5 no.4 pp. 882-884
ISSN:
1471-8278
Subject:
microsatellite repeats; alleles; loci; DNA primers; polymerase chain reaction; heterozygosity; genetic markers; Viola
DOI:
10.1111/j.1471-8286.2005.01096.x

17. Characterization of phosphoinositide-3-kinase, class 3 (PIK3C3) gene and association tests with quantitative traits in pigs

Author:
Kim, J.H.; Choi, B.H.; Lim, H.T.; Park, E.W.; Lee, S.H.; Seo, B.Y.; Cho, I.C.; Lee, J.G.; Oh, S.J.; Jeon, J.T.
Source:
Asian-Australas. j. anim. sci 2005 v.18 no.12 pp. 1701-1707
ISSN:
1011-2367
Subject:
animal growth; swine; genetic markers; backfat; single nucleotide polymorphism; South Korea
DOI:
10.5713/ajas.2005.1701

18. Characterization of seven polymorphic microsatellites for the study of two Ranunculaceae: Ranunculus nodiflorus L., a rare endangered species and Ranunculus flammula L., a common closely related species

Author:
Noel, F.; Boisselier-Dubayle, M.C.; Lambourdiere, J.; Machon, N.; Moret, J.; Samadi, S.
Source:
Molecular ecology notes 2005 v.5 no.4 pp. 827-829
ISSN:
1471-8278
Subject:
microsatellite repeats; endangered species; alleles; loci; Ranunculus; DNA primers; polymerase chain reaction; heterozygosity; genetic markers; France
DOI:
10.1111/j.1471-8286.2005.01077.x

19. Characterization of six microsatellite DNA loci for Sorex arizonae

Author:
Ortega, J.; Young, S.; Simons, L.H.; Maldonado, J.E.
Source:
Molecular ecology notes 2005 v.5 no.4 pp. 851-853
ISSN:
1471-8278
Subject:
microsatellite repeats; endangered species; alleles; loci; DNA primers; polymerase chain reaction; heterozygosity; Sorex; genetic markers; Arizona; New Mexico
DOI:
10.1111/j.1471-8286.2005.01086.x

20. Characterization of six microsatellite loci in the African wild silk moth (Gonometa postica, Lasiocampidae)

Author:
Delport, W.; Ferguson, J.W.; Bloomer, P.
Source:
Molecular ecology notes 2005 v.5 no.4 pp. 860-862
ISSN:
1471-8278
Subject:
microsatellite repeats; alleles; loci; Lasiocampidae; DNA primers; polymerase chain reaction; heterozygosity; genetic markers
DOI:
10.1111/j.1471-8286.2005.01089.x