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You searched for: Publication Year 2017 Remove constraint Publication Year: 2017 Subject term coat proteins Remove constraint Subject term: coat proteins
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1. A 3-year field study exhibits no apparent effect of the transgenic Cucumber mosaic virus-resistant pepper (Capsicum annuum L.) on soil fungal populations and communities

Author:
Mee Kyung Sang; Hong Joe Kim; Ji Yeon Oh; Ki Hyun Ryu; Chee Hark Harn; Ki Deok Kim
Source:
Applied soil ecology 2017 v.109 pp. 40-48
ISSN:
0929-1393
Subject:
Aspergillus; Capsicum annuum; Cucumber mosaic virus; Fusarium; Penicillium; Trichoderma; coat proteins; cucumbers; cultivars; denaturing gradient gel electrophoresis; detection limit; edaphic factors; fungal communities; gene flow; genes; inbred lines; nontarget organisms; pathotypes; pepper; plate count; polymerase chain reaction; selective media; soil biota; soil fungi; soil sampling; transgenic plants
Abstract:
... Genetically modified (GM) plants have potential benefits in modern agriculture such as increasing yields and decreasing the use of chemicals. However, GM plants may cause unintended consequences of gene flow to indigenous plants or microbes and the detrimental effects on non-target organisms such as soil microbial communities. To investigate these possible unintended effects of GM plants, we condu ...
DOI:
10.1016/j.apsoil.2016.09.019

2. Absolute quantification of cassava brown streak virus mRNA by real-time qPCR

Author:
Rudolph R. Shirima; Daniel G. Maeda; Edward Kanju; Gloria Ceasar; Flora I. Tibazarwa; James P. Legg
Source:
Journal of virological methods 2017 v.245 pp. 5-13
ISSN:
0166-0934
Subject:
Cassava brown streak virus; Ugandan cassava brown streak virus; breeding; cassava; coat proteins; cost effectiveness; environmental factors; financial economics; food security; genes; genetic vectors; messenger RNA; quantitative polymerase chain reaction; screening; viruses; Africa
Abstract:
... Cassava brown streak disease (CBSD) is the most important virus disease of cassava and a major food security threat in Africa. Yearly economic losses of up to $100 million USD have been attributed to CBSD. The lack of information on plant-virus interactions has restricted progress in breeding for CBSD resistance. Virus quantification is becoming a major tool for the quick and reliable assessment o ...
DOI:
10.1016/j.jviromet.2017.03.003
PubMed:
28315718
PubMed Central:
PMC5429390

3. Adaptive diversification between the classic rabbit hemorrhagic disease virus (RHDV) and the RHDVa isolates: A genome-wide perspective

Author:
Yan Li; Xueping Yao; Ying Li; Feifei Xu; Zexiao Yang
Source:
Microbial pathogenesis 2017 v.110 pp. 527-532
ISSN:
0882-4010
Subject:
Rabbit hemorrhagic disease virus; amino acids; coat proteins; mortality; pathogens; rabbits
Abstract:
... Rabbit haemorrhagic disease virus (RHDV) is a highly infectious pathogen that causes high mortality in wild and domestic rabbits. RHDV could be divided into two subtypes, classic RHDV and RHDVa, which present clear genetic, antigenic, and epidemiological differences. To further understand the nature of the diversity, we performed a genome-wide evolutionary study on the classic RHDV and RHDVa isola ...
DOI:
10.1016/j.micpath.2017.07.036

4. Adjuvanticity of a CTLA-4 3′ UTR complementary oligonucleotide for emulsion formulated recombinant subunit and inactivated vaccines

Author:
Xin Li; Lei Yang; Peiyan Zhao; Yun Yao; Fangjie Lu; Liqun Tu; Jiwei Liu; Zhiqin Li; Yongli Yu; Liying Wang
Source:
Vaccine 2017 v.35 no.18 pp. 2379-2389
ISSN:
0264-410X
Subject:
B-lymphocytes; CD4-positive T-lymphocytes; Foot-and-mouth disease virus; adjuvants; antibodies; antigens; coat proteins; cytotoxicity; emulsions; gene expression; gene expression regulation; humans; immune response; inactivated vaccines; messenger RNA; mice; microorganisms; oligonucleotides
Abstract:
... Cytotoxic T-lymphocyte antigen 4 (CTLA-4) is recognized as a critical inhibitory regulator of T-cell proliferation and activation, opposing the action of CD28-mediated co-stimulation. Interfering or blocking CTLA-4 can result in continuous T-cell activation required for the full immune response to pathogenic microbes and vaccines. To test if nucleic acid-based CTLA-4 inhibitors could be developed ...
DOI:
10.1016/j.vaccine.2017.03.043

5. Analysis of synonymous codon usage bias and phylogeny of coat protein gene in banana bract mosaic virus isolates

Author:
Atul B. Patil; Vijayendra S. Dalvi; Akhilesh A. Mishra; Bal Krishna; Abdul Azeez
Source:
VirusDisease 2017 v.28 no.2 pp. 156-163
ISSN:
2347-3584
Subject:
Banana bract mosaic virus; Banana bunchy top virus; Banana streak virus complex; Cucumber mosaic virus; Musa; National Center for Biotechnology Information; bananas; coat proteins; codons; crops; livelihood; phylogeny; plant viruses; India
Abstract:
... The banana is one of the world’s most important livelihood crops. Banana plants are principally infected by four virus species, Banana bunchy top virus (genus Babuvirus), Cucumber mosaic virus (genus Cucumovirus), Banana streak virus (genus Badnavirus) and Banana bract mosaic virus (genus Potyvirus). The objective of this study is to understand the codon usage pattern and phylogeny of coat protein ...
DOI:
10.1007/s13337-017-0380-x
PubMed:
28770241
PubMed Central:
PMC5510630

6. An Analysis of the Complete Genome Sequence and Subgenomic RNAs Reveals Unique Features of the Ampelovirus, Grapevine leafroll-associated virus 1

Author:
Donda Bhanu Priya; Jarugula Sridhar; Naidu Rayapati A.
Source:
Phytopathology 2017 v.107 no.9 pp. 1069-1079
ISSN:
0031-949X
Subject:
Closterovirus; Grapevine leafroll-associated virus 1; RNA; Vitis; coat proteins; genes; molecular biology; nucleotides; open reading frames; plant diseases and disorders; plant viruses; restriction fragment length polymorphism; reverse transcriptase polymerase chain reaction; vineyards; viruses
Abstract:
... Despite being the first closterovirus documented in grapevines (Vitis sp.), the molecular biology of Grapevine leafroll-associated virus 1 (GLRaV-1, genus Ampelovirus, family Closteroviridae) is still in its infancy. In this study, the complete genome sequence of two GLRaV-1 isolates was determined to be 18,731 (isolate WA-CH) and 18,946 (isolate WA-PN) nucleotides (nt). The genome of WA-CH and WA ...
DOI:
10.1094/PHYTO-02-17-0061-R

7. Apple necrotic mosaic virus, a novel ilarvirus from mosaic-diseased apple trees in Japan and China

Author:
Hiroki Noda; Noriko Yamagishi; Hajime Yaegashi; Fei Xing; Jipeng Xie; Shifang Li; Tao Zhou; Tsutae Ito; Nobuyuki Yoshikawa
Source:
Journal of general plant pathology 2017 v.83 no.2 pp. 83-90
ISSN:
1345-2630
Subject:
Apple chlorotic leaf spot virus; Apple mosaic virus; Apple stem grooving virus; Apple stem pitting virus; Malus domestica; Prunus necrotic ringspot virus; RNA; amino acid sequences; apples; coat proteins; genome; high-throughput nucleotide sequencing; leaves; orchards; phylogeny; plant diseases and disorders; plant viruses; reverse transcriptase polymerase chain reaction; surveys; trees; viruses; China; Japan
Abstract:
... The causal agent of apple mosaic disease has been previously thought to be solely caused by apple mosaic virus (ApMV). In this study, we report that a novel ilarvirus is also associated with apple mosaic disease. Next-generation sequencing analysis of an apple tree showing mosaic symptoms revealed that the tree was infected with three apple latent viruses (apple stem pitting virus, apple stem groo ...
DOI:
10.1007/s10327-017-0695-x

8. Application of pigeon circovirus recombinant capsid protein for detecting anti-PiCV antibodies in the sera of asymptomatic domestic pigeons and the potential use of a combination of serological and molecular tests for controlling circovirus infections in pigeon breeding flocks

Author:
Tomasz Stenzel; Grzegorz Woźniakowski; Daria Pestka; Dariusz Choszcz; Bartłomiej Tykałowski; Marcin Śmiałek; Andrzej Koncicki
Source:
Poultry science 2017 v.96 no.2 pp. 303-308
ISSN:
0032-5791
Subject:
Escherichia coli; Pigeon circovirus; antibodies; antigens; cloaca; coat proteins; pigeons; poultry science; quantitative polymerase chain reaction; standard deviation
Abstract:
... The aim of this study was to evaluate the serologic status of domestic pigeons not infected and asymptomatically infected with the pigeon circovirus (PiCV) with the use of an enzyme-linked assay based on PiCV recombinant capsid protein as a plate antigen. Recombinant PiCV capsid protein was produced by transforming E. coli BL21 (DE3) Rosetta colonies with expression plasmids.Blood samples and cloa ...
DOI:
10.3382/ps/pew266

9. Arabidopsis lipid droplet‐associated protein (LDAP) – interacting protein (LDIP) influences lipid droplet size and neutral lipid homeostasis in both leaves and seeds

Author:
Michal Pyc; Yingqi Cai; Satinder K. Gidda; Olga Yurchenko; Sunjung Park; Franziska K. Kretzschmar; Till Ischebeck; Oliver Valerius; Gerhard H. Braus; Kent D. Chapman; John M. Dyer; Robert T. Mullen
Source:
plant journal 2017 v.92 no.6 pp. 1182-1201
ISSN:
0960-7412
Subject:
Arabidopsis; baits; biogenesis; coat proteins; droplet size; droplets; endoplasmic reticulum; homeostasis; knockout mutants; leaves; lipid content; phenotype; seed oils; seeds; surfactants; tissues; transfer DNA; triacylglycerols; two hybrid system techniques
Abstract:
... Cytoplasmic lipid droplets (LDs) are found in all types of plant cells; they are derived from the endoplasmic reticulum and function as a repository for neutral lipids, as well as serving in lipid remodelling and signalling. However, the mechanisms underlying the formation, steady‐state maintenance and turnover of plant LDs, particularly in non‐seed tissues, are relatively unknown. Previously, we ...
Handle:
10113/5872560
DOI:
10.1111/tpj.13754

10. The ArfGAP protein MoGlo3 regulates the development and pathogenicity of Magnaporthe oryzae

Author:
Shengpei Zhang; Xiu Liu; Lianwei Li; Rui Yu; Jialiang He; Haifeng Zhang; Xiaobo Zheng; Ping Wang; Zhengguang Zhang
Source:
Environmental microbiology 2017 v.19 no.10 pp. 3982-3996
ISSN:
1462-2912
Subject:
GTPase-activating proteins; Golgi apparatus; Magnaporthe oryzae; Saccharomyces cerevisiae; adenosine diphosphate; appressoria; blast disease; cell membranes; coat proteins; conidia; conidiation; endocytosis; endoplasmic reticulum; guanine; mutants; pathogenesis; pathogenicity; physiological transport; reactive oxygen species; sexual development; vegetative growth; yeasts
Abstract:
... The ADP ribosylation factor (Arf) and the coat protein complex I (COPI) are involved in vesicle transport. Together with GTPase‐activating proteins (ArfGAPs) and guanine exchange factors (ArfGEFs) that regulate the activity of Arf, they govern vesicle formation, COPI trafficking and the maintenance of the Golgi complex. In an ongoing effort to study the role of membrane trafficking in pathogenesis ...
DOI:
10.1111/1462-2920.13798
PubMed:
28504350
PubMed Central:
PMC5861720

11. Assessing sequence diversity of Groundnut rosette disease agents and the distribution of Groundnut rosette assistor virus in major groundnut-producing regions of Ghana

Author:
Andrew S. Appiah; Frederick L. Sossah; Robert S. Tegg; Samuel K. Offei; Calum R. Wilson
Source:
Tropical plant pathology 2017 v.42 no.2 pp. 109-120
ISSN:
1983-2052
Subject:
Groundnut rosette assistor virus; Groundnut rosette virus; RNA; amino acids; coat proteins; farmers; genes; genetic variation; nucleotide sequences; peanuts; sequence diversity; Ghana; Malawi; Nigeria
Abstract:
... The incidence of Groundnut rosette assistor virus (GRAV) in farmers’ fields and sequence diversity of groundnut rosette disease (GRD) agents were assessed in the three northern groundnut production regions of Ghana. GRAV incidence was high (69.5 to 75.0%) but not significantly different between the regions. Nucleotide sequencing of GRAV coat protein (CP) gene revealed 99–100% identity among the Gh ...
DOI:
10.1007/s40858-017-0140-x

12. Assessing the diversity of the g23 gene of T4-like bacteriophages from Lake Baikal with high-throughput sequencing

Author:
Sergey Potapov; Olga Belykh; Andrey Krasnopeev; Anna Gladkikh; Marsel Kabilov; Aleksey Tupikin; Tatyana Butina
Source:
FEMS microbiology letters 2017 v.365 no.3 pp. -
ISSN:
1574-6968
Subject:
Myoviridae; bacteriophages; basins; clones; coat proteins; ecosystems; genes; genetic variation; high-throughput nucleotide sequencing; lakes; plankton; Lake Baikal
Abstract:
... Based on second generation sequencing (MiSeq platform, Illumina), we determined the genetic diversity of T4-like bacteriophages of the family Myoviridae by analysing fragments of the major capsid protein gene g23 in the plankton of Lake Baikal. The sampling depth in our study was significantly higher than in those obtained by the Sanger method before. We obtained 33 701 sequences of the g23 gene f ...
DOI:
10.1093/femsle/fnx264

13. Betanodavirus: Dissection of the viral life cycle

Author:
C‐F Low; B Syarul Nataqain; H‐Y Chee; M Z H Rozaini; M Najiah
Source:
Journal of fish diseases 2017 v.40 no.11 pp. 1489-1496
ISSN:
0140-7775
Subject:
Betanodavirus; apoptosis; cell viability; coat proteins; death; encephalopathy; genome; genomics; marine fish; molecular biology; pathogens; retinal diseases; viral shedding; virion; viruses
Abstract:
... Progressive research has been recently made in dissecting the molecular biology of Betanodavirus life cycle, the causative pathogen of viral encephalopathy and retinopathy in economic important marine fish species. Establishment of betanodavirus infectious clone allows the manipulation of virus genome for functional genomic study, which elucidates the biological event of the viral life cycle at mo ...
DOI:
10.1111/jfd.12638

14. Binding interactions between enantiomeric α-aminophosphonate derivatives and tobacco mosaic virus coat protein

Author:
Weiying Zhang; Xiangyang Li; Guoping Zhang; Yan Ding; Longlu Ran; Liangzhi Luo; Jian Wu; Deyu Hu; Baoan Song
Source:
International journal of biological macromolecules 2017 v.94 pp. 603-610
ISSN:
0141-8130
Subject:
Tobacco mosaic virus; antiviral properties; arginine; calorimetry; coat proteins; crop losses; fluorescence emission spectroscopy; molecular models; mutants; titration; virion; viruses
Abstract:
... Tobacco mosaic virus (TMV) is an important plant virus that can cause considerable crop loss. Our group synthesized a series of enantiomeric α-aminophosphonate derivatives with high anti-TMV activities. The activity of (R)-diphenyl-1-(4-methylbenzothiazole-2-amino)-1-(thiphene-2-yl)-methylphosphonate (Q-R) was found to be superior to that of (S)-diphenyl-1-(4-methyl benzothiazole-2-amino)-1-(thiph ...
DOI:
10.1016/j.ijbiomac.2016.10.027

15. Binding of rabbit hemorrhagic disease virus-like particles to host histo-blood group antigens is blocked by antisera from experimentally vaccinated rabbits

Author:
Yanhua Song; Zhiyu Fan; Yuanyuan Zuo; Houjun Wei; Bo Hu; Mengmeng Chen; Rulong Qiu; Jiabin Xue; Fang Wang
Source:
Archives of virology 2017 v.162 no.11 pp. 3425-3430
ISSN:
0304-8608
Subject:
Baculoviridae; Rabbit hemorrhagic disease virus; antibodies; antigens; antiserum; blood serum; carbohydrates; coat proteins; enzyme-linked immunosorbent assay; humoral immunity; immune response; immunization; neutralization; rabbits; vaccines; virus-like particles
Abstract:
... During infection host histo-blood group antigens (HBGAs) act as attachment factors that interact with rabbit hemorrhagic disease virus (RHDV) and participate in the infectious process. In the present study, baculovirus expressing recombinant RHDV capsid protein (VP60r) as a vaccine immunogen was used to test its antigenicity and immunogenicity via immunization experiments. Each group of rabbits im ...
DOI:
10.1007/s00705-017-3509-8

16. Biological and Molecular Characteristics of a Novel Partitivirus Infecting the Edible Fungus Lentinula edodes

Author:
Guo Mengpei; Bian Yinbing; Wang Jinjie; Wang Gangzheng; Ma Xiaolong; Xu Zhangyi
Source:
Plant disease 2017 v.101 no.5 pp. 726-733
ISSN:
0191-2917
Subject:
coat proteins; quantitative polymerase chain reaction; diagnostic techniques; edible fungi; open reading frames; Partitiviridae; phylogeny; reverse transcriptase polymerase chain reaction; Vitis; Lentinula edodes; genes; RNA-directed RNA polymerase; double-stranded RNA; mycoviruses; mixed infection; mycelium
Abstract:
... A new partitivirus named Lentinula edodes partitivirus 1 (LePV1) was isolated from a diseased L. edodes strain with severe degeneration of the mycelium and imperfect browning in bag cultures. The nucleotide sequences of LePV1 dsRNA-1 and dsRNA-2 were determined; they were 2,382 bp and 2,245 bp in length, and each contained a single ORF encoding RNA-dependent RNA polymerase (RdRp) and coat protein ...
DOI:
10.1094/PDIS-07-16-0951-RE

17. Biological and molecular characterization of Zucchini yellow mosaic virus isolates infecting melon in Xinjiang, China

Author:
Dong Wang; Guan Li
Source:
Canadian journal of plant pathology 2017 v.39 no.1 pp. 48-59
ISSN:
1715-2992
Subject:
Cucurbita pepo; Zucchini yellow mosaic virus; breeding; coat proteins; genes; host range; hosts; melons; pathotypes; phylogeny; viruses; China
Abstract:
... Zucchini yellow mosaic virus (ZYMV) causes one of the most destructive diseases of cucurbits worldwide. Although the virus has been present in China for more than 25 years, there is little information about biological and molecular traits of ZYMV isolates from China. This study aimed to characterize 26 ZYMV isolates from Xinjiang, China based on pathotypes, molecular variability and host range. Ph ...
DOI:
10.1080/07060661.2017.1285356

18. Biological and molecular characterization of a putative new potexvirus infecting Senna occidentalis

Author:
Jorge A. M. Rezende; Viviana M. Camelo-García; Sónia C. S. Andrade; José E. Buriolla; Elliot W. Kitajima; Ligia M. L. Duarte
Source:
Archives of virology 2017 v.162 no.2 pp. 529-533
ISSN:
0304-8608
Subject:
Potexvirus; RNA-directed RNA polymerase; Senna occidentalis; bioassays; coat proteins; genes; nucleotides; open reading frames; plant diseases and disorders; plant viruses; polyclonal antibodies; seeds; viruses; Brazil
Abstract:
... In this work, we report the complete genome sequence of, production of polyclonal antibodies against, and development of biological assays for a putative new potexvirus, named senna mosaic virus (SenMV), found infecting Senna occidentalis in the state of São Paulo, Brazil. The complete genome sequence of SenMV comprises 6775 nucleotides excluding the poly(A) tail. The genome organization is simila ...
DOI:
10.1007/s00705-016-3114-2

19. Biology, evolution, and medical importance of polyomaviruses: An update

Author:
Ugo Moens; Andi Krumbholz; Bernhard Ehlers; Roland Zell; Reimar Johne; Sébastien Calvignac-Spencer; Chris Lauber
Source:
Infection, genetics, and evolution 2017 v.54 pp. 18-38
ISSN:
1567-1348
Subject:
elderly; reptiles; genome; amphibians; fish; skin neoplasms; open reading frames; DNA; brain; regulatory proteins; structural proteins; viruses; patients; pathogens; coat proteins; invertebrates; antigens; humans; evolution; hosts; Polyomaviridae; host specificity; birds; cell cycle
Abstract:
... The family Polyomaviridae encompasses non-enveloped viruses with a circular dsDNA genome that is typically approximately 5000bp in length. Originally isolated from mammals, polyomavirus sequences have now been detected in invertebrates, fish, amphibians, reptiles and birds, although it remains to be determined whether all these animals are genuine hosts. The genomes of all polyomaviruses encode at ...
DOI:
10.1016/j.meegid.2017.06.011

20. Bustos virus, a new member of the negevirus group isolated from a Mansonia mosquito in the Philippines

Author:
Ryosuke Fujita; Ryusei Kuwata; Daisuke Kobayashi; Arlene Garcia Bertuso; Haruhiko Isawa; Kyoko Sawabe
Source:
Archives of virology 2017 v.162 no.1 pp. 79-88
ISSN:
0304-8608
Subject:
Culex; RNA; coat proteins; cytopathogenicity; gene expression; mammals; open reading frames; virion; viruses; Philippines
Abstract:
... We isolated two distinct viruses from mosquitoes collected in Bustos, Bulacan province, Philippines, in 2009. These viruses show rapid replication and strong cytopathic effects in mosquito C6/36 cells. Whole-genome analysis of these viruses demonstrated that both viruses belong to the negevirus group. One of the viruses, from Culex vishunui mosquitoes, is a new strain of Negev virus. The other vir ...
DOI:
10.1007/s00705-016-3068-4