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1. Anadenanthera colubrina (Vell) Brenan: Ethnobotanical, phytochemical, pharmacological and toxicological aspects

Author:
Merline Delices; Jessica de Araujo Isaias Muller; Karuppusamy Arunachalam; Domingos Tabajara de Oliveira Martins
Source:
Journal of ethnopharmacology 2023 v.300 no. pp. 115745
ISSN:
0378-8741
Subject:
Anadenanthera colubrina; National Center for Biotechnology Information; antioxidants; antiviral properties; bark; databases; environmental impact; ethnobotany; flavonoids; herbal medicines; indigenous species; insecticides; mechanism of action; therapeutics; toxicity; toxicology; traditional medicine; trees; triterpenoids; South America
Abstract:
... Anadenanthera colubrina (Vell.) Brenan is an endemic tree to South America and different parts of it are used by the population for the treatment of various diseases, as well as in indigenous rituals. This species has high pharmacological potential but may present toxic potential due to the presence of psychotropic compounds. To review published studies with the species A. colubrina regarding ethn ...
DOI:
10.1016/j.jep.2022.115745

2. Benchmarking environmental impacts of power groups used in a designed UAV: Hybrid hydrogen fuel cell system versus lithium-polymer battery drive system

Author:
Duran Çalışır; Selcuk Ekici; Adnan Midilli; T. Hikmet Karakoc
Source:
Energy 2023 v.262 pp. 125543
ISSN:
0360-5442
Subject:
acidification; batteries; clean energy; computer software; databases; ecotoxicology; electric motors; energy; environmental assessment; environmental impact; eutrophication; fuels; hybrids; hydrogen fuel cells; inventories; life cycle assessment; lithium; oxidation; ozonosphere; photochemistry; polymers; propellers
Abstract:
... This study investigates the environmental impacts of using two different power groups in a fixed-wing Unmanned Aerial Vehicle (UAV). The first power group consists of a conventional electric motor, a lithium polymer battery and a propeller. The second power group is the hybrid power group formed by adding the Proton Exchange Membrane (PEM) fuel cell. The life cycle assessment (LCA) method is appli ...
DOI:
10.1016/j.energy.2022.125543

3. Beyond pastures, look at plastic: Using Sentinel-2 imagery to map silage bags to improve understanding of cattle intensity

Author:
Fernandez Pedro David; Gärtner Phillipp; Nasca José Andrés; Rojas Tobias; Gasparri Nestor Ignacio
Source:
Science of the total environment 2023 v.855 pp. 158390
ISSN:
0048-9697
Subject:
algorithms; atmospheric precipitation; corn silage; databases; environment; farms; forage; heifers; hunger; land cover; pastures; polyethylene; rangelands; remote sensing; steers; sustainable development
Abstract:
... Cattle ranching has increased globally in the last decades, and although pasture expansion is well documented across different regions, there is little understanding of the intensity at which cattle operate in these areas. With freely available Sentinel-2 satellite imagery, we mapped for the first time polyethylene silage bags used for forage conservation in a year with the Random Forest algorithm ...
DOI:
10.1016/j.scitotenv.2022.158390

4. Biological filtration for wastewater treatment in the 21st century: A data-driven analysis of hotspots, challenges and prospects

Author:
Lili Jin; Xiangzhou Sun; Hongqiang Ren; Hui Huang
Source:
Science of the total environment 2023 v.855 pp. 158951
ISSN:
0048-9697
Subject:
Japan; antibiotic resistance; aquaculture; biofiltration; databases; environment; nitrogen; phosphorus; wastewater treatment; water pollution; China
Abstract:
... Biological filtration has been widely used in wastewater treatment around the world, yet achieving satisfactory removal of pollutants remains a challenge due to the complexity of water pollution. In order to reveal the hotspots and trends of biological filtration from the perspective of research innovation, 5454 SCI papers and 14,287 patents collected from the Web of Science Core Collection and De ...
DOI:
10.1016/j.scitotenv.2022.158951

5. Bioprospecting and potential of cactus mucilages: A bibliometric review

Author:
Érica de Andrade Vieira; Angela Maria Tribuzy de Magalhães Cordeiro
Source:
Food chemistry 2023 v.401 pp. 134121
ISSN:
0308-8146
Subject:
antioxidants; bibliometric analysis; cacti and succulents; databases; food chemistry; mucilages; prebiotics
Abstract:
... Cactus mucilage (CMU) have been widely studied in various applications. This review addresses the sources, extraction methods, composition, biological properties and CMU applications with the help of bibliometric analysis to select scientific articles available in the Web of Science database and evaluated by VOSviewer (2001–2021). CMU are generally characterized as an arabinogalactan-type polysacc ...
DOI:
10.1016/j.foodchem.2022.134121

6. Boron-doped carbon nanowalls for fast and direct detection of cytochrome C and ricin by matrix-free laser desorption/ionization mass spectrometry

Author:
I.S. Hosu; M. Sobaszek; M. Ficek; R. Bogdanowicz; Y. Coffinier
Source:
Talanta 2023 v.252 pp. 123778
ISSN:
0039-9140
Subject:
bioterrorism; blood serum; boron; cytochrome c; databases; desorption; detection limit; galactosamine; graphene; ricin; spectrometers; toxicity
Abstract:
... Detecting proteins via surface assisted laser desorption/ionization mass spectrometry (SALDI-MS) method is still highly challenging, and only few examples of nanomaterials have been demonstrated to perform such detection so far. In this study, carbon nanowalls (CNWs), vertically aligned graphene sheet-based materials, presenting specific morphology, dimensions, and boron doping levels have shown i ...
DOI:
10.1016/j.talanta.2022.123778

7. Comparative proteomics and in silico allergenicity of fresh and powdered skipjack tuna and Nile tilapia

Author:
Kanokwan Nonthawong; Chantragan Srisomsap; Daranee Chokchaichamnankit; Jisnuson Svasti; Pharima Phiriyangkul
Source:
Food control 2023 v.144 pp. 109345
ISSN:
0956-7135
Subject:
Katsuwonus pelamis; Oreochromis niloticus; adulterated products; allergenicity; chickens; computer simulation; cytoskeleton; databases; egg yolk; fish; food safety; fructose-bisphosphate aldolase; glyceraldehyde-3-phosphate dehydrogenase; peptides; phosphopyruvate hydratase; protein synthesis; proteomics; raw fish; sequence homology; tropomyosins
Abstract:
... Fish is an important food source but can contain allergens which cause mild to life-threatening symptoms. The aim of this study was to compare the identified proteins in fresh and powdered fish in skipjack tuna and Nile tilapia using proteomic approach. The biological functions of the proteins were identified using the UniProt database. Potential allergens were identified based on the sequence sim ...
DOI:
10.1016/j.foodcont.2022.109345

8. Design of aminoethoxyvinylglycine functional analogues to delay postharvest ripening of tomato fruit

Author:
Ziyan Liu; Tanglu Hu; Chunxin Yu; Weiming Tan; Yuanyue Shen; Liusheng Duan
Source:
Postharvest biology and technology 2023 v.195 pp. 112096
ISSN:
0925-5214
Subject:
aminoethoxyvinylglycine; databases; enzymes; ethylene; ethylene production; fruits; hydrogen; shelf life; structure-activity relationships; tomatoes
Abstract:
... Ethylene is a key hormone in regulating fruit ripening, thus inhibiting ethylene production is an effective way to delay postharvest ripening of fruit. Aminoethoxyvinylglycine (AVG) is a competitively ethylene synthesis inhibitor that can significantly delay the fruit softening at postharvest stage and prolong the fruit shelf life. However, the high production cost of AVG limits its widespread use ...
DOI:
10.1016/j.postharvbio.2022.112096

9. Dietary protein consumption profiles show contrasting impacts on environmental and health indicators

Author:
Elie Perraud; Juhui Wang; Marion Salomé; François Mariotti; Emmanuelle Kesse-Guyot
Source:
Science of the total environment 2023 v.856 pp. 159052
ISSN:
0048-9697
Subject:
databases; dietary protein; environment; environmental impact; fish; food quality; greenhouse gases; human health; land use; pork; poultry; protein composition; protein intake; risk; ruminants; surveys; vegan diet; France
Abstract:
... Patterns of protein intake are strong characteristics of diets, and protein sources have been linked to the environmental and nutrition/health impacts of diets. However, few studies have worked on protein profiles, and most of them have focused on specific diets like vegetarian or vegan diets. Furthermore, the description of the environmental impact of diets has often been limited to greenhouse ga ...
DOI:
10.1016/j.scitotenv.2022.159052

10. Genome-wide profiling of dysregulated piRNAs and their target genes implicated in oncogenicity of tongue squamous cell carcinoma

Author:
Trisha Chattopadhyay; Pooja Gupta; Rojalin Nayak; Bibekanand Mallick
Source:
Gene 2023 v.849 pp. 146919
ISSN:
0378-1119
Subject:
RNA; antineoplastic agents; carcinogenesis; carcinogenicity; databases; gene expression; genes; geranylgeranyl diphosphate synthase; germ cells; mouth neoplasms; squamous cell carcinoma; tongue; transcriptome
Abstract:
... PIWI-interacting RNAs (piRNAs) are single-stranded, 23–36 nucleotide long RNAs that regulate gene expression in the germline but are also detected in some cancers. However, there are no reports yet on piRNA expression in tongue squamous cell carcinoma (TSCC), the most common oral cancer (80–90% percent of all oral cancers). We performed small RNA and whole transcriptome sequencing in H357 tongue c ...
DOI:
10.1016/j.gene.2022.146919

11. Global knowledge domain and prospects in tuna research: A bibliometric analysis

Author:
Jingqian Xie; Zhihe Bian; Qiang Wu; Lin Tao; Feng Wu; Tian Lin
Source:
Aquaculture and fisheries 2023 v.8 no.2 pp. 202-210
ISSN:
2468-550X
Subject:
aquaculture; bibliometric analysis; computer software; databases; food composition; humans; international cooperation; marine ecosystems; marine resources; nutrition; tuna
Abstract:
... Tunas are among the most economically important fish species and play critical roles in food composition and nutrition of humans. As apex predators, they also keep the marine ecosystem healthy and balanced. Both natural and human factors influence the status of this important marine resource and their habitats. There is a large cadre of studies on how tunas are of great significance to the exploit ...
DOI:
10.1016/j.aaf.2021.09.005

12. Hotspots and trends of biological water treatment based on bibliometric review and patents analysis

Author:
Lili Jin; Xiangzhou Sun; Hongqiang Ren; Hui Huang
Source:
Journal of environmental sciences (China) 2023 v.125 pp. 774-785
ISSN:
1001-0742
Subject:
Japan; activated sludge; biodegradation; biological treatment; biotransformation; databases; metrology; nitrogen; phosphorus; toxicity; wastewater; water reuse; water treatment; China
Abstract:
... In order to reveal the hotspots and trends of biological water treatment from the perspectives of scientific and technological innovation, both of the bibliometric review and patents analysis were performed in this study. The Web of Science Core Collection database and Derwent Innovation Index database recorded 30023 SCI papers and 50326 patents, respectively were analyzed via information visualiz ...
DOI:
10.1016/j.jes.2022.03.037

13. Identification and functional analysis of histone 1.2-like in red sea bream (Pagrus major)

Author:
Lianfei Song; Maqsood Ahmed Soomro; Lingshu Wang; Yuting Song; Guobin Hu
Source:
Developmental and comparative immunology 2023 v.138 pp. 104529
ISSN:
0145-305X
Subject:
DNA repair; Pagrus major; Vibrio anguillarum; bacterial infections; chromatin; cytotoxicity; databases; fish; gene expression regulation; genes; histones; immune response; oligonucleotides; pathogens; phylogeny; sequence alignment; transcriptome
Abstract:
... Histone H1 acts as an essential chromatin component and participates in the formation of higher chromatin structures together with core histones. In addition, H1 also has important functions in physiological processes such as gene expression regulation, DNA repair, and the immune response. In this study, the histone homologous protein Pm-H1.2-like was identified from the transcriptome database of ...
DOI:
10.1016/j.dci.2022.104529

14. Identification of upregulated genes in glioblastoma and glioblastoma cancer stem cells using bioinformatics analysis

Author:
Hasan Onur Caglar; Zekeriya Duzgun
Source:
Gene 2023 v.848 pp. 146895
ISSN:
0378-1119
Subject:
bioinformatics; brain neoplasms; data collection; databases; fibroblast growth factor receptor 3; gene expression; genes; glioblastoma; protein-protein interactions; therapeutics
Abstract:
... Glioblastoma (GBM) is the most common malignant brain tumor among adults. Cancer stem cells (CSCs) are known to drive treatment resistance and recurrence. However, a few CSC markers have been identified as therapeutic targets for GBM. This study aimed to show highly coexpressed genes in GBM CSCs and TCGA GBM samples and to identify possible therapeutic targets for GBM. The gene expression profiles ...
DOI:
10.1016/j.gene.2022.146895

15. Lichens as material for Lepidoptera's housing: A molecular approach to a widespread and highly selective interaction

Author:
Ricardo Miranda-González; Bruce McCune; Andrew R. Moldenke
Source:
Fungal ecology 2023 v.61 pp. 101195
ISSN:
1754-5048
Subject:
Psychidae; camouflage; databases; ecology; fungi; genetic markers; lichens; moths; silk
Abstract:
... Interactions between lichens and invertebrates are widespread and have evolved independently in several orders of invertebrates. Lichens participate as food, shelter, background for mimicry, or as camouflage for animals to wear. For this study, we discovered caterpillars of the moth family Psychidae living inside bags made from silk and lichens. We used molecular techniques to identify the lichens ...
DOI:
10.1016/j.funeco.2022.101195

16. Long-term nitrogen and phosphorus removal, shifts of functional bacteria and fate of resistance genes in bioretention systems under sulfamethoxazole stress

Author:
Yan Xu; Danyi Zhang; Qingju Xue; Chibin Bu; Yajun Wang; Benchi Zhang; Ying Wang; Qingdong Qin
Source:
Journal of environmental sciences (China) 2023 v.126 pp. 1-16
ISSN:
1001-0742
Subject:
Desulfomicrobium; Geobacter; Rhodoplanes; activated carbon; antibiotic resistance; bioretention areas; databases; durability; microbial communities; nitrogen; phosphorus; prediction; sulfamethoxazole; total nitrogen; wastewater; China
Abstract:
... To understand the long-term performance of bioretention systems under sulfamethoxazole (SMX) stress, an unplanted bioretention system (BRS) and two modified BRSs with coconut-shell activated carbon (CAC) and CAC/zero-valent-iron (Fe⁰) granules (CAC-BRS and Fe/CAC-BRS) were established. Both CAC-BRS and Fe/CAC-BRS significantly outperformed BRS in removing total nitrogen (TN) (CAC-BRS: 82.48%; Fe/C ...
DOI:
10.1016/j.jes.2022.03.045

17. Machine learning approaches to predict the photocatalytic performance of bismuth ferrite-based materials in the removal of malachite green

Author:
Zeeshan Haider Jaffari; Ather Abbas; Sze-Mun Lam; Sanghun Park; Kangmin Chon; Eun-Sik Kim; Kyung Hwa Cho
Source:
Journal of hazardous materials 2023 v.442 pp. 130031
ISSN:
0304-3894
Subject:
bismuth; databases; humic acids; light intensity; malachite green; neural networks; pH; photocatalysis; photocatalysts; surface area; wastewater
Abstract:
... This study focuses on the potential capability of numerous machine learning models, namely CatBoost, GradientBoosting, HistGradientBoosting, ExtraTrees, XGBoost, DecisionTree, Bagging, light gradient boosting machine (LGBM), GaussianProcess, artificial neural network (ANN), and light long short-term memory (LightLSTM). These models were investigated to predict the photocatalytic degradation of mal ...
DOI:
10.1016/j.jhazmat.2022.130031

18. Optimized modelling of countrywide soil organic carbon levels via an interpretable decision tree

Author:
Ndiye M. Kebonye; Prince C. Agyeman; James K.M. Biney
Source:
Smart agricultural technology 2023 v.3 pp. 100106
ISSN:
2772-3755
Subject:
algorithms; databases; decision support systems; model validation; models; regression analysis; soil organic carbon; Czech Republic
Abstract:
... There are relatively few studies that explicitly evaluate the performance of machine learning algorithms (MLAs) such as decision trees while varying conditions like data splitting strategies and feature selection methods in digital soil mapping (DSM). Since several more powerful black-box models such as Random Forest (RF) exist, regular models like the Classification and Regression Tree (CART) are ...
DOI:
10.1016/j.atech.2022.100106

19. Population genetic and evolution analysis of Vibrio isolated from Turkish fish farms

Author:
Muhammed Duman; Noemí Buján; Soner Altun; Jesús L. Romalde; Izzet Burcin Saticioglu
Source:
Aquaculture 2023 v.562 pp. 738728
ISSN:
0044-8486
Subject:
Oncorhynchus mykiss; Sparidae; Vibrio cholerae; aquaculture; bass; databases; evolution; gene flow; genetic recombination; genetic variation; humans; multilocus sequence typing; population structure; shellfish; vaccines
Abstract:
... The genus Vibrio includes important pathogenic species for human and aquatic organisms such as Vibrio cholera, V. parahaemolyticus, V. vulnificus, V. anguillarum or V. harveyi. At present, Vibrionaceae family consists of >190 described species, classified into nine genera. Vibrio are widespread in shellfish, finfish and marine ecosystems and show resourceful ecologies, which recognized as one of t ...
DOI:
10.1016/j.aquaculture.2022.738728

20. Responses of soil microbial communities to concentration gradients of antibiotic residues in typical greenhouse vegetable soils

Author:
Lixia Zhao; Zheng Pan; Baoli Sun; Yang Sun; Liping Weng; Xiaojing Li; Huike Ye; Jianzhi Ye; Xiaowei Pan; Bin Zhou; Yongtao Li
Source:
Science of the total environment 2023 v.855 pp. 158587
ISSN:
0048-9697
Subject:
Bacteroidetes; Firmicutes; antibiotic resistance genes; antibiotics; databases; environment; greenhouses; metabolites; pollution; relative risk; soil; soil microorganisms; vegetable growing; vegetables; China
Abstract:
... To explore the responses of soil microbial communities to concentration gradients of antibiotic residues in soil, 32 soil samples were collected from a typical greenhouse vegetable production base in Northern China in 2019. The total concentrations of 26 antibiotic residues in these soil samples was 83.24–4237.93 μg·kg⁻¹, of which metabolites of tetracyclines were 23.34–1798.80 μg·kg⁻¹. The total ...
DOI:
10.1016/j.scitotenv.2022.158587

21. Target and suspect analysis of liquid crystal monomers in soil from different urban functional zones

Author:
Rongrong Li; Kefan Ren; Huijun Su; Yu Wei; Guanyong Su
Source:
Science of the total environment 2023 v.854 pp. 158408
ISSN:
0048-9697
Subject:
agricultural zoning; blood serum; databases; dust; environment; gas chromatography; humans; liquid crystals; mass spectrometry; sediments; soil
Abstract:
... Recent studies have reported the occurrence of liquid crystal monomers (LCMs) in sediment, indoor dust, hand wipes, and human serum samples; however, information regarding their contamination status in soil is currently unavailable. The concentrations of 39 target LCMs were determined in n = 96 surface soil samples collected from five different urban functional zones including agricultural, scenic ...
DOI:
10.1016/j.scitotenv.2022.158408

22. Use of modeling to map potentially toxic elements and assess the risk to human health in soils affected by mining activity

Author:
Ésio de Castro Paes; Gustavo Vieira Veloso; David Lukas de Arruda Silva; Elpídio Inácio Fernandes-Filho; Maurício Paulo Ferreira Fontes; Emanuelle Mercês Barros Soares
Source:
Catena 2023 v.220 pp. 106662
ISSN:
0341-8162
Subject:
carcinogenicity; catenas; databases; human health; linear models; morphometry; pollution; prediction; risk; risk assessment; soil; support vector machines
Abstract:
... Determining the levels and spatial distribution of potentially toxic elements (PTEs) is essential in designing mitigating strategies to remediate contaminated areas. Efficient prediction of PTEs is difficult due to high spatial variability and multiple sources of contamination. The use of machine learning algorithms is an alternative for the improvement of the predictions. Objective of the study w ...
DOI:
10.1016/j.catena.2022.106662

23. Widespread protein N-phosphorylation in organism revealed by SiO2@DpaZn beads based mild-acidic enrichment method

Author:
Wang He; He Yingyun; Jiang Bo; Sui Zhigang; Yuan Huiming; Zhao Baofeng; Liang Zhen; Zhang Lihua; Zhang Yukui
Source:
Talanta 2023 v.251 pp. 123740
ISSN:
0039-9140
Subject:
Escherichia coli; amino acid sequences; databases; peptides; protein phosphorylation
Abstract:
... Protein phosphorylation is one of the most commonly studied and ubiquitous post-translational modifications (PTMs), and defining site-specific phosphorylation is essential to understand basic and disease biology. However, the chemical properties and biological activities hamper the detection of non-canonical N-phosphorylation from biological samples, and the study of N-phosphorylation over the las ...
DOI:
10.1016/j.talanta.2022.123740

24. A database of modeled gridded dry deposition velocities for 45 gaseous species and three particle size ranges across North America

Author:
Leiming Zhang; Zhuanshi He; Zhiyong Wu; Anne Marie Macdonald; Jeffrey R. Brook; Shailesh Kharol
Source:
Journal of environmental sciences (China) 2023 v.127 pp. 264-272
ISSN:
1001-0742
Subject:
chemical species; chemistry; data collection; databases; dry deposition; particle size; pollutants; China; North America
Abstract:
... The dry deposition process refers to the flux loss of an atmospheric pollutant due to uptake of the pollutant by the earth's surfaces. Dry deposition flux of a chemical species is typically calculated as the product of its surface-layer concentration and its dry deposition velocity (Vd). Field measurement based Vd data are very scarce or do not exist for many chemical species considered in chemist ...
DOI:
10.1016/j.jes.2022.05.030

25. A review of socioeconomic indicators of sustainability and wellbeing building on the social foundations framework

Author:
Henry M. Custodio; Michalis Hadjikakou; Brett A. Bryan
Source:
Ecological economics 2023 v.203 pp. 107608
ISSN:
0921-8009
Subject:
databases; ecological economics; human development; humans; nationalities and ethnic groups; sustainable development; systematic review
Abstract:
... Monitoring progress towards key social and economic goals requires a comprehensive understanding of the social, cultural, and economic aspects of sustainability and the indicators available to track their performance. Through a systematic review of 84 studies focusing on socioeconomic indicators of human development, we compiled a comprehensive database of 1389 socioeconomic indicators and examine ...
DOI:
10.1016/j.ecolecon.2022.107608

26. A simple soft ionization approach for GC-MS assisted by capillary array

Author:
Sergei S. Poteshin; Dmitry I. Zhilyaev; Roman S. Borisov
Source:
Talanta 2023 v.253 pp. 123924
ISSN:
0039-9140
Subject:
databases; gas chromatography; ionization; mass spectrometry
Abstract:
... Electron ionization (EI) is the most widely used ionization method in gas chromatography/mass spectrometry (GC-MS). This method possesses a lot of advantages including versatility for various classes of volatile and semi volatile organic compounds, high sensitivity, structure informativity and reproducibility, production of database searchable mass spectra. On the other hand there are a number of ...
DOI:
10.1016/j.talanta.2022.123924

27. (Micro)plastics: A possible criterion for beach certification with a focus on the Blue Flag Award

Author:
Gurusamy Kutralam-Muniasamy; Fermín Pérez-Guevara; V.C. Shruti
Source:
Science of the total environment 2022 v.803 pp. 150051
ISSN:
0048-9697
Subject:
certification; coastal zone management; databases; decision making; environment; microplastics; outreach; pollution; tourism
Abstract:
... On the one hand, environmental certifications like the Blue Flag award (BFA) are well-known globally for its role in beach management and tourism attraction. Plastic pollution like microplastics, on the other hand, has become a global concern due to their increasing persistence and negative environmental repercussions. This paper examines and discusses the factors that would lead to (micro)plastic ...
DOI:
10.1016/j.scitotenv.2021.150051

28. The 11 sins of seafood: Assessing a decade of food fraud reports in the global supply chain

Author:
Sophie Lawrence; Christopher Elliott; Wim Huisman; Moira Dean; Saskia van Ruth
Source:
Comprehensive reviews in food science and food safety 2022 v.21 no.4 pp. 3746-3769
ISSN:
1541-4337
Subject:
European Union; adulterated products; data collection; databases; exports; fisheries; food availability; food fraud; food industry; food safety; imports; seafoods; stakeholders; supply chain; China; India; Vietnam
Abstract:
... Due to complex, valuable, and often extremely opaque supply chains, seafood is a commodity that has experienced a high prevalence of food fraud throughout the entirety of its logistics network. Fraud detection and prevention require an in‐depth understanding of food supply chains and their vulnerabilities and risks so that food business operators, regulators, and other stakeholders can implement p ...
DOI:
10.1111/1541-4337.12998

29. The 16-year periodicity in the winter surface temperature variations in the Antarctic Peninsula region

Author:
Oleksandr Evtushevsky; Asen Grytsai; Oleksiy Agapitov; Volodymyr Kravchenko; Gennadi Milinevsky
Source:
Climate dynamics 2022 v.58 no.1-2 pp. 35-47
ISSN:
0930-7575
Subject:
climate; databases; dynamics; periodicity; sea level; surface temperature; wavelet; wind; Antarctic region
Abstract:
... The aim of this work is a comprehensive study of the 16-year periodicity of winter surface temperature in the Antarctic Peninsula (AP) region, described earlier, and its possible source based on weather station records over the 1952–2019 period making use of the Scientific Committee on Antarctic Research (SCAR) Reference Antarctic Data for Environmental Research (READER) database, as well as Fouri ...
DOI:
10.1007/s00382-021-05886-7

30. 16S rRNA metagenomics data on the bacterial communities in integrated poultry-fish farm ponds

Author:
Sunday B. Akinde; Folasade M. Adeyemi; Omotayo O. Oyedara; Temitope F. Ajani; Waidi F. Sule; Janet O. Olaitan; Bamidele A. Iwalokun; Olabisi O. Ojo
Source:
Data in Brief 2022 v.42 pp. 108269
ISSN:
2352-3409
Subject:
Actinobacteria; Bayesian theory; Cyanobacteria; Firmicutes; Proteobacteria; birds; data collection; databases; farms; fish; food safety; genes; humans; metagenomics; poultry; poultry manure; public health; taxonomy; Benin; Cameroon; Madagascar; Nigeria
Abstract:
... In an integrated poultry-fish (IPF) farming system, fish and bird are reared simultaneously. It is a common practice in Sub-Saharan Africa countries like Nigeria, Cameroon, Madagascar, and Benin, offering economic benefits to farmers and minimizing farm running costs. It seems like another way for farmers to manage poultry waste as it is a common practice in IPF farm settings to feed reared fishes ...
DOI:
10.1016/j.dib.2022.108269

31. 1H Nuclear Magnetic Resonance (NMR)-Based Metabolome Diversity of Seabuckthorn (H. rhamnoides L.) Berries Originating from Two Geographical Regions of Indian Himalayas

Author:
Sugandh Singh; Prakash Chand Sharma
Source:
Food analytical methods 2022 v.15 no.1 pp. 157-171
ISSN:
1936-9751
Subject:
Hippophae rhamnoides; beta-alanine; cosmetics; databases; dietary supplements; drugs; food safety; heat; humans; metabolites; metabolome; metabolomics; multivariate analysis; nuclear magnetic resonance spectroscopy; spermidine; Himalayan region; India
Abstract:
... A comprehensive analysis of crucial metabolites in seabuckthorn (Hippophae rhamnoides L.) was conducted by analyzing the methanolic extract of berries originating from 37 geographical sites of the Indian Himalayas by using ¹H NMR-based metabolome profiling. The concentration of 103 metabolites was annotated, of which two, spermidine and beta-alanine, were reported for the first time in higher conc ...
DOI:
10.1007/s12161-021-02100-6

32. 2D HILIC‐ELSD/UPLC‐Q‐TOF‐MS Method for Acquiring Phospholipid Profiles and the Application in Caenorhabditis elegans

Author:
Xiaotian Sun; Tao Zhang; Pinzhen Zhao; Guanjun Tao; Ruijie Liu; Ming Chang; Xingguo Wang
Source:
European journal of lipid science and technology 2022 v.124 no.2 pp. e2100075
ISSN:
1438-7697
Subject:
Caenorhabditis elegans; arachidonic acid; biomarkers; databases; disease diagnosis; eicosapentaenoic acid; hydrophilic interaction chromatography; lipidomics; mass spectrometry; oleic acid; phospholipids; quantitative analysis
Abstract:
... Phospholipids are the main constituent of cellular membranes and have recently been identified to have diagnostic value as biomarkers for many diseases. Accordingly, much emphasis is now laid on developing optimal analytical techniques for the phospholipid profiles of various biological samples. In the present study, different classes of phospholipids are first separated by optimized hydrophilic i ...
DOI:
10.1002/ejlt.202100075

33. 3D-RISM-AI: A Machine Learning Approach to Predict Protein–Ligand Binding Affinity Using 3D-RISM

Author:
Kazu Osaki; Toru Ekimoto; Tsutomu Yamane; Mitsunori Ikeguchi
Source:
Journal of physical chemistry 2022 v.126 no.33 pp. 6148-6158
ISSN:
1520-5207
Subject:
Gibbs free energy; databases; ligands; models; physical chemistry; prediction; solvents; surface area
Abstract:
... Hydration free energy (HFE) is a key factor in improving protein–ligand binding free energy (BFE) prediction accuracy. The HFE itself can be calculated using the three-dimensional reference interaction model (3D-RISM); however, the BFE predictions solely evaluated using 3D-RISM are not correlated to the experimental BFE for abundant protein–ligand pairs. In this study, to predict the BFE for multi ...
DOI:
10.1021/acs.jpcb.2c03384

34. A 40-year climatology of air temperature extremes in the southern Balkans based on the ERA5 database

Author:
C. J. Lolis; G. Kotsias; D. Farmakidis
Source:
Theoretical and applied climatology 2022 v.149 no.1-2 pp. 355-377
ISSN:
0177-798X
Subject:
advection; air; air temperature; climatology; cluster analysis; cold; cooling; databases; factor analysis; heat; summer; surface temperature; Europe; Northern Africa
Abstract:
... The air temperature extremes in the southern Balkans and the synoptic conditions that favor their occurrence are examined for the 40-year period 1979–2018, with the use of the ERA5 database. The 12UTC and 06UTC daily 0.25°×0.25° surface temperature values are used for the identification of the extreme high and extreme low temperature days, respectively. These days are defined based on the temperat ...
DOI:
10.1007/s00704-022-04053-0

35. 5-Demethylnobiletin: Insights into its pharmacological activity, mechanisms, pharmacokinetics and toxicity

Author:
Haiyan Ding; Qiang You; Dan Li; Youping Liu
Source:
Phytomedicine 2022 v.104 pp. 154285
ISSN:
0944-7113
Subject:
Citrus; absorption; animals; apoptosis; autophagy; databases; drugs; health promotion; mechanism of action; melanogenesis; metabolites; pharmacokinetics; polymethoxyflavones; rheumatoid arthritis; therapeutics; toxicity; toxicology
Abstract:
... 5-Demethylnobiletin (5DN) is a polymethoxyflavone (PMF) primarily found in citrus fruits. It has various health-promoting properties and hence has attracted significant attention from scholars worldwide. This review is the first to systematically summarize the recent research progress of 5DN, including its pharmacological activity, mechanism of action, pharmacokinetics, and toxicological effects. ...
DOI:
10.1016/j.phymed.2022.154285

36. 5-Hydroxytryptamine activates a 5-HT/c-Myc/SLC6A4 signaling loop in non–small cell lung cancer

Author:
Yuan Tu; Shengping Yao; Qiong Chen; Wenqin Li; Yinghui Song; Pei Zhang
Source:
Biochimica et biophysica acta 2022 v.1866 no.4 pp. 130093
ISSN:
0304-4165
Subject:
carcinogenesis; databases; fluorescent antibody technique; genome; immunohistochemistry; lung neoplasms; metastasis; neoplasm progression; neurotransmitters; patients; protein synthesis; psychological stress; serotonin; therapeutics; transcription factors
Abstract:
... Psychological stress is a crucial driver of tumorigenesis and cancer metastasis. The impact of the stress-associated neurotransmitter 5-hydroxytryptamine (5-HT) on tumor progression is poorly understood. We aimed to identify the role of 5-HT in the pathogenesis of non–small cell lung cancer (NSCLC) and to identify innovative therapeutic strategies. The expression of 5-HT and related signaling mole ...
DOI:
10.1016/j.bbagen.2022.130093

37. 5mC-Related lncRNAs as Potential Prognostic Biomarkers in Colon Adenocarcinoma

Author:
Yinghui Huang; Huiqian Huang; Yong Wang; Hui Liu; Yingdan Huang
Source:
Biology 2022 v.11 no.2 pp. -
ISSN:
2079-7737
Subject:
5-methylcytosine; adenocarcinoma; biomarkers; colon; databases; immunotherapy; metastasis; nomogram; prediction; prognosis; regression analysis; risk
Abstract:
... Globally, colon adenocarcinoma (COAD) is one of the most frequent types of malignant tumors. About 40~50% of patients with advanced colon adenocarcinoma die from recurrence and metastasis. Long non-coding RNAs (lncRNAs) and 5-methylcytosine (5mC) regulatory genes have been demonstrated to involve in the progression and prognosis of COAD. The goal of this study was to explore the biological charact ...
DOI:
10.3390/biology11020231

38. The 79 CE eruption of Vesuvius: A lesson from the past and the need of a multidisciplinary approach for developments in volcanology

Author:
Domenico M. Doronzo; Mauro A. Di Vito; Ilenia Arienzo; Monica Bini; Benedetta Calusi; Matteo Cerminara; Stefano Corradini; Sandro de Vita; Biagio Giaccio; Lucia Gurioli; Giorgio Mannella; Giovanni P. Ricciardi; Ilaria Rucco; Domenico Sparice; Micol Todesco; Elisa Trasatti; Giovanni Zanchetta
Source:
Earth-science reviews 2022 v.231 pp. 104072
ISSN:
0012-8252
Subject:
databases; environmental impact; geophysics; hazard characterization; paleoclimatology; stratigraphy; tephra
Abstract:
... A full review of the 79 CE Plinian eruption of Vesuvius is presented through a multidisciplinary approach, exploiting the integration of historical, stratigraphic, sedimentological, petrological, geophysical, paleoclimatic, and modelling studies dedicated to this famous and devastating natural event. All studies have critically been reviewed and integrated with original data, spanning from proxima ...
DOI:
10.1016/j.earscirev.2022.104072

39. 87Sr/86Sr of Lake Baikal: Evidence for rapid homogenization of water

Author:
E.I. Demonterova; A.V. Ivanov; E.V. Sklyarov; G.V. Pashkova; А.M. Klementiev; М.L. Tyagun; V.A. Vanin; E.G. Vologina; A.S. Yakhnenko; M.S. Yakhnenko; E.A. Kozyreva
Source:
Applied geochemistry 2022 v.144 pp. 105420
ISSN:
0883-2927
Subject:
atmospheric precipitation; confidence interval; databases; geochemistry; homogenization; lakes; uncertainty; Lake Baikal
Abstract:
... We provide an extended ⁸⁷Sr/⁸⁶Sr database for the water of Lake Baikal collected along the lake and within its bays at a depth range from the surface down to 1366 m, the major tributary rivers, lake animals, and atmospheric precipitation. The water of open Lake Baikal, the Little Sea (Maloe More) Strait, and large bays are characterized by a uniform ⁸⁷Sr/⁸⁶Sr = 0.7086266 ± 0.0000045 (n = 44, uncer ...
DOI:
10.1016/j.apgeochem.2022.105420

40. ACSL4 promotes colorectal cancer and is a potential therapeutic target of emodin

Author:
Guoliang Dai; Dong Wang; Shitang Ma; Shengwei Hong; Kang Ding; Xiying Tan; Wenzheng Ju
Source:
Phytomedicine 2022 v.102 pp. 154149
ISSN:
0944-7113
Subject:
Rheum palmatum; Western blotting; antineoplastic activity; carcinogenesis; cell proliferation; colorectal neoplasms; data collection; databases; emodin; gene expression regulation; immunohistochemistry; ingredients; mice; mortality; secretion; therapeutics; vascular endothelial growth factor receptor-1; vascular endothelial growth factor receptor-2
Abstract:
... Colorectal cancer (CRC) is an important death-related disease in the world and new therapeutic strategies are urgently needed to reduce mortality. Several studies have demonstrated that emodin, the main ingredient of Rheum palmatum, fights cancer but its potential anti-tumor effect on CRC is still unknown. The present study is aimed to explore the potential anti-tumor effects of emodin against CRC ...
DOI:
10.1016/j.phymed.2022.154149

41. ADDAGMA: A database for domestic animal gut microbiome atlas

Author:
Yueren Xu; Bingbing Lei; Qingfeng Zhang; Yunjiao Lei; Cunyuan Li; Xiaoyue Li; Rui Yao; Ruirui Hu; Kaiping Liu; Yue Wang; Yuying Cui; Limin Wang; Jihong Dai; Lei Li; Wei Ni; Ping Zhou; Ze-Xian Liu; Shengwei Hu
Source:
Computational and Structural Biotechnology Journal 2022 v.20 pp. 891-898
ISSN:
2001-0370
Subject:
biotechnology; cattle; chickens; databases; digestive system; horses; intestinal microorganisms; metadata; metagenomics; microbiome; phenotype; swine
Abstract:
... Animal gut microbiomes play important roles in the health, diseases, and production of animal hosts. The volume of animal gut metagenomic data, including both 16S amplicon and metagenomic sequencing data, has been increasing exponentially in recent years, making it increasingly difficult for researchers to query, retrieve, and reanalyze experimental data and explore new hypotheses. We designed a d ...
DOI:
10.1016/j.csbj.2022.02.003

42. AI and computational chemistry-accelerated development of an alotaketal analogue with conventional PKC selectivity

Author:
Jumpei Maki; Asami Oshimura; Chihiro Tsukano; Ryo C. Yanagita; Yutaka Saito; Yasubumi Sakakibara; Kazuhiro Irie
Source:
Chemical communications 2022 v.58 no.47 pp. 6693-6696
ISSN:
1364-548X
Subject:
Alzheimer disease; HIV infections; artificial intelligence; databases; isozymes; ligands; protein kinase C; stereochemistry
Abstract:
... The protein kinase C (PKC) family consists of ten isozymes and is a potential target for treating cancer, Alzheimer's disease, and HIV infection. Since known natural PKC agonists have little selectivity among the PKC isozymes, a new scaffold is needed to develop PKC ligands with remarkable isozyme selectivity. Taking advantage of machine-learning and computational chemistry approaches, we screened ...
DOI:
10.1039/d2cc01759h

43. AKT serine/threonine kinase 2-mediated phosphorylation of fascin threonine 403 regulates esophageal cancer progression

Author:
Zhi-Da Zhang; Bing Wen; Da-Jia Li; Dan-Xia Deng; Xiao-Dong Wu; Yin-Wei Cheng; Lian-Di Liao; Lin Long; Geng Dong; Li-Yan Xu; En-Min Li
Source:
international journal of biochemistry & cell biology 2022 v.145 pp. 106188
ISSN:
1357-2725
Subject:
actin; cell proliferation; centrifugation; crosslinking; databases; esophageal neoplasms; mass spectrometry; metastasis; molecular dynamics; neoplasm cells; neoplasm progression; phosphorylation; precipitin tests; prognosis; pseudopodia; serine; threonine
Abstract:
... Fascin is the main actin-bundling protein in filopodia and is highly expressed in metastatic tumor cells. The overexpression of Fascin has been associated with poor clinical prognosis and metastatic progression. Post-translational modifications of Fascin, such as phosphorylation, can affect the proliferation and invasion of tumor cells by regulating the actin-bundling activity of Fascin. However, ...
DOI:
10.1016/j.biocel.2022.106188

44. ALS risk factors: Industrial airborne chemical releases

Author:
Angeline Andrew; Jie Zhou; Jiang Gui; Xun Shi; Meifang Li; Antoinette Harrison; Bart Guetti; Ramaa Nathan; Tanya Butt; Daniel Peipert; Maeve Tischbein; Erik P. Pioro; Elijah Stommel; Walter Bradley
Source:
Environmental pollution 2022 v.295 pp. 118658
ISSN:
0269-7491
Subject:
United States Environmental Protection Agency; air; algorithms; amyotrophic lateral sclerosis; chromium; data collection; databases; etiology; gender; health services; inventories; methylene chloride; nickel; pollution; styrene
Abstract:
... Most amyotrophic lateral sclerosis (ALS) cases are sporadic (∼90%) and environmental exposures are implicated in their etiology. Large industrial facilities are permitted the airborne release of certain chemicals with hazardous properties and report the amounts to the US Environmental Protection Agency (EPA) as part of its Toxics Release Inventory (TRI) monitoring program. The objective of this pr ...
DOI:
10.1016/j.envpol.2021.118658

45. ANN modeling for forecasting of VCR engine performance and emission parameters fuelled with green diesel extracted from waste biomass resources

Author:
Rajayokkiam Manimaran; Thangavelu Mohanraj; Moorthy Venkatesan
Source:
Environmental science and pollution research 2022 v.29 no.34 pp. 51183-51210
ISSN:
0944-1344
Subject:
Trichosanthes cucumerina; biodiesel; biomass; carbon monoxide; databases; diesel fuel; energy use and consumption; fruits; neural networks; nitric oxide; opacity; pollution; regression analysis; research; smoke; temperature
Abstract:
... In this research work, the experimental tests were conducted on a single-cylinder, constant speed, variable compression ratio (VCR) engine fuelled with green diesel. Initially, bio-oil was extracted from waste Trichosanthes cucumerina fruit seeds using the Soxhlet apparatus. The acquired bio-oil is used to make green diesel through the trans-esterification process. The fuel blends were prepared wi ...
DOI:
10.1007/s11356-022-19500-8

46. An ANNs-Based Method for Automated Labelling of Schematic Metro Maps

Author:
Tian Lan; Zhilin Li; Jicheng Wang; Chengyin Gong; Peng Ti
Source:
ISPRS international journal of geo-information 2022 v.11 no.1 pp. -
ISSN:
2220-9964
Subject:
automation; databases; geometry; spatial data
Abstract:
... Schematic maps are popular for representing transport networks. In the last two decades, some researchers have been working toward automated generation of network layouts (i.e., the network geometry of schematic maps), while automated labelling of schematic maps is not well considered. The descriptive-statistics-based labelling method, which models the labelling space by defining various station-b ...
DOI:
10.3390/ijgi11010036

47. AR-Based 3D Virtual Reconstruction of Brick Details

Author:
Naai-Jung Shih; Yu-Chen Wu
Source:
Remote Sensing 2022 v.14 no.3 pp. -
ISSN:
2072-4292
Subject:
augmented reality; bricks; color; databases; mobile telephones; models; photogrammetry; standard deviation
Abstract:
... Building heritage contributes to the historical context and industrial history of a city. Brick warehouses, which comprise a systematic interface between components, demand an interactive manipulation of inspected parts to interpret their construction complexity. The documentation of brick details in augmented reality (AR) can be challenging when the relative location needs to be defined in 3D. Th ...
DOI:
10.3390/rs14030748

48. ARBRE: Computational resource to predict pathways towards industrially important aromatic compounds

Author:
Anastasia Sveshnikova; Homa MohammadiPeyhani; Vassily Hatzimanikatis
Source:
Metabolic engineering 2022 v.72 pp. 259-274
ISSN:
1096-7176
Subject:
amino acids; biosynthesis; databases; enzymes; lignin; synthetic biology
Abstract:
... Synthetic biology and metabolic engineering rely on computational search tools for predictions of novel biosynthetic pathways to industrially important compounds, many of which are derived from aromatic amino acids. Pathway search tools vary in their scope of covered reactions and compounds, as well as in metrics for ranking and evaluation. In this work, we present a new computational resource cal ...
DOI:
10.1016/j.ymben.2022.03.013

49. AReGeoDatHa: Apulian Regional GeoDatabase for geo-hydrological Hazards

Author:
Carmela Vennari; Paola Salvati; Cinzia Bianchi; Domenico Casarano; Mario Parise; Alessia Basso; Ivan Marchesini
Source:
Journal of environmental management 2022 v.322 pp. 116051
ISSN:
0301-4797
Subject:
anthropogenic activities; climate; data collection; databases; environmental management; geographical distribution; geomorphology; information sources; risk; spatial data; stakeholders; Italy
Abstract:
... In many territories, geo-hydrological disasters represent a problem of considerable importance, given that they can cause substantial property damage, above all, life losses. In Italy, the geo-hydrological risk is widespread depending on the geomorphological settings, climate conditions and anthropic pressure. Accurate knowledge regarding the spatial and temporal extensions of past events, as well ...
DOI:
10.1016/j.jenvman.2022.116051

50. ASPN Is a Potential Biomarker and Associated with Immune Infiltration in Endometriosis

Author:
Li Wang; Jing Sun
Source:
Genes 2022 v.13 no.8 pp. -
ISSN:
2073-4425
Subject:
B-lymphocytes; T-lymphocytes; Western blotting; biomarkers; calcium; chemokines; cytotoxicity; data collection; databases; endometriosis; endometrium; endothelial cells; extracellular matrix; female genital diseases; fibroblasts; gene expression; gene expression regulation; genes; immunotherapy; metastasis; muscle contraction; patients; regression analysis; smooth muscle
Abstract:
... Objective: Endometriosis is a benign gynecological disease characterized by distant metastasis. Previous studies have discovered abnormal numbers and function of immune cells in endometriotic lesions. We aimed to find potential biomarkers of endometriosis and to explore the relationship between ASPN and the immune microenvironment of endometriosis. Methods: We obtained the GSE141549 and GSE7305 da ...
DOI:
10.3390/genes13081352