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You searched for: Subject term Pseudomonas Remove constraint Subject term: Pseudomonas Subject term statistical analysis Remove constraint Subject term: statistical analysis
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1. A review on nirS-type and nirK-type denitrifiers via a scientometric approach coupled with case studies

Author:
Haishu Sun; Shanxue Jiang
Source:
Environmental science 2022 v.24 no.2 pp. 221-232
ISSN:
2050-7895
Subject:
Bradyrhizobium; DNA; Pseudomonas; Thauera; carbon; denitrification; denitrifying microorganisms; genes; metagenomics; nitrates; nitrite reductase; nitrites; nitrous oxide; pH; reaction kinetics; rhizosphere; soil types; soil water; stable isotopes; statistical analysis; water quality
Abstract:
... The denitrification process plays an important role in improving water quality and is a source/sink of nitrous oxide to the atmosphere. The second important rate-limiting step of the denitrification process is catalyzed by two enzymes with different structures and unrelated evolutionary relationships, namely, the Cu-type nitrite reductase encoded by the nirK gene and the cytochrome cd1-type nitrit ...
DOI:
10.1039/d1em00518a

2. Metagenomics revealed the mobility and hosts of antibiotic resistance genes in typical pesticide wastewater treatment plants

Author:
Liming Shi; Junya Zhang; Tiedong Lu; Kecheng Zhang
Source:
Science of the total environment 2022 v.817 pp. 153033
ISSN:
0048-9697
Subject:
Acinetobacter; Citrobacter; Enterobacter; Pseudomonas; antibiotic resistance; antibiotic resistance genes; antibiotics; environment; humans; metagenomics; microbial communities; multiple drug resistance; pesticides; sludge; statistical analysis; wastewater treatment
Abstract:
... Pesticide showed a crucial selective pressure of antibiotic resistance genes (ARGs) in the environmental dimension, especially in the pesticide wastewater treatment process, where the information on the mobility and hosts of ARGs was very important but limited. This study tried to clarify the mobile antibiotic resistome and ARG hosts in three typical pesticide wastewater treatment plants (PWWTPs) ...
DOI:
10.1016/j.scitotenv.2022.153033

3. Study of bacterium associated with maize and nematode, Pseudomonas fragi using 16S rDNA from Rustenburg, North West Province, South Africa

Author:
Mehrnoush Aminisarteshnizi
Source:
Research on crops 2021 v.22 no.4 pp. 935-939
ISSN:
2348-7542
Subject:
Acrobeles; Pseudomonas fragi; bacteria; corn; phylogeny; plant disease resistance; plant growth; research; saprophytes; statistical analysis; Italy; South Africa
Abstract:
... Plant-associated Pseudomonas live as saprophytes and parasites on plant surfaces and inside plant tissues. Many plant-associated Pseudomonas promote plant growth by suppressing pathogenic micro-organisms, synthesizing growth-stimulating plant hormones, and promoting increased plant disease resistance. This study was conducted to isolate and identify a Pseudomonas bacterium from a maize field and a ...
DOI:
10.31830/2348-7542.2021.153

4. Vertical distribution characteristics and interactions of polycyclic aromatic compounds and bacterial communities in contaminated soil in oil storage tank areas

Author:
Guangming Xu; Shuying Geng; Wei Cao; Rui Zuo; Yanguo Teng; Aizhong Ding; Fuqiang Fan; Junfeng Dou
Source:
Chemosphere 2022 v.301 pp. 134695
ISSN:
0045-6535
Subject:
Pseudomonas; Pseudonocardia; bacterial communities; community structure; ecological function; fluorenes; fossil fuels; molecular weight; naphthalene; oil spills; oils; phenanthrenes; polluted soils; redox potential; spatial distribution; statistical analysis
Abstract:
... Polycyclic aromatic compound (PAC) contamination in soil as a result of oil spills is a serious issue because of the huge global demand for fossil energy. This study assessed the vertical variation in polycyclic aromatic hydrocarbons (PAHs), derivatives of PAHs (dPAHs) and bacterial community structure in deep soil with long-term contamination by oil spillage. Our results suggest that the content ...
DOI:
10.1016/j.chemosphere.2022.134695

5. Characterization and Performance of Lactate-Feeding Consortia for Reductive Dechlorination of Trichloroethene

Author:
Jiangwei Li; Anyi Hu; Shijie Bai; Xiaoyong Yang; Qian Sun; Xu Liao; Chang-Ping Yu
Source:
Microorganisms 2021 v.9 no.4 pp. -
ISSN:
2076-2607
Subject:
Dehalococcoides; Desulforhabdus; Desulfovibrio; Pseudomonas; bioinformatics; bioremediation; carbon; dechlorination; lactic acid; metabolites; microbial communities; statistical analysis
Abstract:
... Understanding the underlying mechanism that drives the microbial community mediated by substrates is crucial to enhance the biostimulation in trichloroethene (TCE)-contaminated sites. Here, we investigated the performance of stable TCE-dechlorinating consortia by monitoring the variations in TCE-related metabolites and explored their underlying assembly mechanisms using 16S rDNA amplicon sequencin ...
DOI:
10.3390/microorganisms9040751

6. Impacts of a glyphosate-based herbicide on the gut microbiome of three earthworm species (Alma millsoni, Eudrilus eugeniae and Libyodrilus violaceus): A pilot study

Author:
Folarin Owagboriaye; Robin Mesnage; Gabriel Dedeke; Taofeek Adegboyega; Adeyinka Aladesida; Mistura Adeleke; Stephen Owa; Michael N. Antoniou
Source:
Toxicology reports 2021 v.8 pp. 753-758
ISSN:
2214-7500
Subject:
Enterobacter; Eudrilus eugeniae; Pantoea; Pseudomonas; earthworms; glyphosate; high-throughput nucleotide sequencing; intestinal microorganisms; soil; statistical analysis; toxicology
Abstract:
... While the impact of glyphosate-based herbicides (GBHs) on earthworms has been studied, little is known about their effects on the earthworm gut microbiome. This study investigated the impact of a GBH on the gut microbial communities of three earthworm species (Alma millsoni, Eudrilus eugeniae and Libyodrilus violaceus). Earthworm species accommodated in soil were sprayed with 115.49 mL/m² of Round ...
DOI:
10.1016/j.toxrep.2021.03.021

7. Characterizing the microbiome in petroleum reservoir flooded by different water sources

Author:
Xiaotong Wang; Xizhe Li; Li Yu; Lixin Huang; Jianlong Xiu; Wei Lin; Yanming Zhang
Source:
Science of the total environment 2019 v.653 pp. 872-885
ISSN:
0048-9697
Subject:
Clostridia; Pseudomonas; Syntrophobacter; Thauera; Thermotoga; biosphere; community structure; dissolved oxygen; genes; hydrochemistry; metagenomics; methane production; microbial communities; microbiome; microorganisms; nitrate reduction; nitrates; nitrites; oil fields; oils; oxidation; sequence analysis; statistical analysis; sulfates; China
Abstract:
... Petroleum reservoir is an unusual subsurface biosphere, where indigenous microbes lived and evolved for million years. However, continual water injection changed the situation by introduction of new electron acceptors, donors and exogenous microbes. In this study, 16S-rRNA gene sequencing, comparative metagenomics and genomic bins reconstruction were employed to investigate the microbial community ...
DOI:
10.1016/j.scitotenv.2018.10.410

8. Bioaerosols in the waterpipe cafés: genera, levels, and factors influencing their concentrations

Author:
Kazem Naddafi; Ramin Nabizadeh; Abbas Norouzian Baghani; Mehdi Fazlzadeh
Source:
Environmental science and pollution research international 2019 v.26 no.20 pp. 20297-20307
ISSN:
0944-1344
Subject:
Cladosporium; Fusarium; Paecilomyces; Penicillium; Pseudomonas; Staphylococcus; air; bacteria; bioaerosols; disease transmission; heating systems; pathogens; people; respiratory tract diseases; restaurants; risk; smoking (habit); statistical analysis; supermarkets; temperature; yeasts
Abstract:
... This study was conducted in order to assess the exposure to bacterial and fungal bioaerosols in the air of waterpipe cafés (AWPCs), in the hose of waterpipe (HWP), and in the water bowl of the waterpipe (WBWP) and to investigate the factors influence increasing the contamination levels in waterpipe cafés in Ardabil. From all the 50 cafés studied, the samples were taken from air and from water cont ...
DOI:
10.1007/s11356-019-05413-6

9. Decomposition of cyanobacterial bloom contributes to the formation and distribution of iron-bound phosphorus (Fe-P): Insight for cycling mechanism of internal phosphorus loading

Author:
Zhicong Wang; Shun Huang; Dunhai Li
Source:
Science of the total environment 2019 v.652 pp. 696-708
ISSN:
0048-9697
Subject:
Fourier transform infrared spectroscopy; Pseudomonas; clay; eutrophication; lakes; microbial communities; phosphorus; pigments; pollution load; sediments; statistical analysis
Abstract:
... Lake eutrophication and the resulting cyanobacterial blooms have become a global water environment problem. These eutrophic lakes usually have relatively high internal phosphorus loading such as Fe-P to support the formation of cyanobacterial blooms. In order to reveal the mechanisms and processes of phosphorus cycling in lake sediments, in this study, Lake Chaohu was selected as the research area ...
DOI:
10.1016/j.scitotenv.2018.10.260

10. Genome‐based evolutionary history of Pseudomonas spp

Author:
Cedar Hesse; Frederik Schulz; Carolee T. Bull; Brenda T. Shaffer; Qing Yan; Nicole Shapiro; Karl A. Hassan; Neha Varghese; Liam D. H. Elbourne; Ian T. Paulsen; Nikos Kyrpides; Tanja Woyke; Joyce E. Loper
Source:
Environmental microbiology 2018 v.20 no.6 pp. 2142-2159
ISSN:
1462-2912
Subject:
Pseudomonas; amino acid sequences; bacteria; data collection; databases; genes; genetic variation; phenotype; phylogeny; statistical analysis
Abstract:
... Pseudomonas is a large and diverse genus of Gammaproteobacteria. To provide a framework for discovery of evolutionary and taxonomic relationships of these bacteria, we compared the genomes of type strains of 163 species and 3 additional subspecies of Pseudomonas, including 118 genomes sequenced herein. A maximum likelihood phylogeny of the 166 type strains based on protein sequences of 100 single‐ ...
DOI:
10.1111/1462-2920.14130

11. Positive impact of biochar alone and combined with bacterial consortium amendment on improvement of bacterial community during cow manure composting

Author:
Yumin Duan; Sanjeev Kumar Awasthi; Tao Liu; Shivpal Verma; Quan Wang; Hongyu Chen; Xiuna Ren; Zengqiang Zhang; Mukesh Kumar Awasthi
Source:
Bioresource technology 2019 v.280 pp. 79-87
ISSN:
0960-8524
Subject:
Dysgonomonas; Marinimicrobium; Pseudomonas; Tissierella; bacterial communities; bacterial culture; biochar; cow manure; high-throughput nucleotide sequencing; statistical analysis; straw
Abstract:
... The present work studied to evaluate the effectiveness under the interaction of bacterial consortium and biochar applied to give impetus to bacterial community activities among cow manure composting. High-throughput sequencing technique and six treatments were carried out: T2, T3 and T6 were single apply of bacteria culture (C), 12%wood biochar (12%WB) and 12%wheat straw biochar (12%WSB), respecti ...
DOI:
10.1016/j.biortech.2019.02.026

12. Comprehensive analyses of functional bacteria and genes in a denitrifying EGSB reactor under Cd(II) stress

Author:
Yu Miao; Xu-Xiang Zhang; Shuyu Jia; Runhua Liao; Aimin Li
Source:
Applied microbiology and biotechnology 2018 v.102 no.19 pp. 8551-8560
ISSN:
0175-7598
Subject:
Halomonas; Pseudomonas; Thauera; Zoogloea; bacteria; biodiversity; bioreactors; cadmium; denitrification; denitrifying microorganisms; genes; industrial effluents; metagenomics; nitrate reductase; nitrates; nitrites; quantitative polymerase chain reaction; ribosomal RNA; sludge; statistical analysis; wastewater treatment
Abstract:
... A bench-scale expanded granular sludge bioreactor (EGSB) was continuously operated to treat synthesized high-nitrate industrial wastewater with increasing bivalent cadmium (Cd(II)) stress. The bioreactor showed nearly complete nitrate removal regardless of Cd(II) loadings, while nitrite accumulated in the effluent when influent Cd(II) loading was over 64 mg/L. Mi-seq sequencing of 16S rRNA gene am ...
DOI:
10.1007/s00253-018-9228-6

13. Effects of the Inoculant Strain Pseudomonas sp. SPN31 nah + and of 2-Methylnaphthalene Contamination on the Rhizosphere and Endosphere Bacterial Communities of Halimione portulacoides

Author:
Vanessa Oliveira; Newton C. M. Gomes; Magda Santos; Adelaide Almeida; Ana I. Lillebø; João Ezequiel; João Serôdio; Artur M. S. Silva; Mário M. Q. Simões; Sílvia M. Rocha; Ângela Cunha
Source:
Current microbiology 2017 v.74 no.5 pp. 575-583
ISSN:
0343-8651
Subject:
Pseudomonas; bacteria; bacterial communities; denaturing gradient gel electrophoresis; endophytes; enzymes; genes; photosynthesis; plant health; polymerase chain reaction; rhizosphere; salt marsh plants; sequence analysis; statistical analysis
Abstract:
... The aim of this study is to evaluate the effects of the inoculation of the saltmarsh plant (Halimione portulacoides) with Pseudomonas sp. SPN31 nah+ combined with exposure to 2-methylnaphthalene (2-MtN) on the plant rhizosphere and endosphere bacterial communities as well as on plant health. To achieve this goal, microcosm experiments were set up. Denaturing gradient gel electrophoresis (DGGE) pro ...
DOI:
10.1007/s00284-017-1197-y

14. Indicators of arable soils fatigue – Bacterial families and genera: A metagenomic approach

Author:
Agnieszka Wolińska; Agnieszka Kuźniar; Urszula Zielenkiewicz; Artur Banach; Mieczysław Błaszczyk
Source:
Ecological indicators 2018 v.93 pp. 490-500
ISSN:
1470-160X
Subject:
Acetobacteraceae; Burkholderia; Cellvibrio; Chitinophagaceae; Flavobacterium; Mucilaginibacter; Myxococcaceae; Nitrosospira; Oxalobacteraceae; Pelomonas; Pseudomonas; Rhizobacter; Rhodanobacter; Sphingomonadaceae; agricultural land; agricultural soils; arable soils; biodiversity; calcium; carbon; environmental indicators; high-throughput nucleotide sequencing; humans; land use; magnesium; metagenomics; nitrite nitrogen; ribosomal RNA; soil pH; soil sampling; soil water; statistical analysis; wastelands; Poland
Abstract:
... The main goal of the study was to determine new metagenomic indicators demonstrating sensitivity to soil fatigue as an effect of long-term agricultural use as well as new metagenomic indicators demonstrating bacterial resistance to human agricultural activity. Thirty-one soil samples (agriculturally exploited soil and wastelands – serving as controls) were taken for the study, in the south-eastern ...
DOI:
10.1016/j.ecolind.2018.05.033

15. Spatial variation in bacterial community in natural wetland‐river‐sea ecosystems

Author:
Hongxia Zhang; Shiling Zheng; Jiawang Ding; Oumei Wang; Fanghua Liu
Source:
Journal of basic microbiology 2017 v.57 no.6 pp. 536-546
ISSN:
0233-111X
Subject:
Desulfococcus; Halomonas; Hydrogenophaga; Marinobacter; Photobacterium; Planctomyces; Propionigenium; Pseudomonas; Salinibacter; Salinivibrio; Thiobacillus; Vibrio; bacteria; bacterial communities; community structure; estuaries; freshwater; genes; high-throughput nucleotide sequencing; marine ecosystems; mixing; pH; ribosomal RNA; salinity; seawater; sediments; spatial variation; statistical analysis; sulfates; wetlands; Yellow River; Yellow Sea
Abstract:
... Wetland‐estuarine‐marine environments are typical oxic/anoxic transition zones and have complex water flow‐paths within the zone of mixing where freshwater interacts with ocean water. Little is known about the impact of this interaction on bacterial community structures or the relationship between bacterial community and geochemical factors in such transitional mixing environments. Hence, we inves ...
DOI:
10.1002/jobm.201700041

16. Agricultural by-products with bioactive effects: A multivariate approach to evaluate microbial and physicochemical changes in a fresh pork sausage enriched with phenolic compounds from olive vegetation water

Author:
Luca Fasolato; Lisa Carraro; Pierantonio Facco; Barbara Cardazzo; Stefania Balzan; Agnese Taticchi; Nadia Andrea Andreani; Filomena Montemurro; Maria Elena Martino; Giuseppe Di Lecce; Tullia Gallina Toschi; Enrico Novelli
Source:
International journal of food microbiology 2016 v.228 pp. 34-43
ISSN:
0168-1605
Subject:
Listeria monocytogenes; Pseudomonas; Staphylococcus aureus; antibacterial properties; bacteria; byproducts; diacylglycerols; food matrix; food pathogens; food preservation; food processing; food safety; in vitro studies; ingredients; lipolysis; manufacturing; microbial growth; models; olives; phenol; physicochemical properties; pork; sausages; sensory properties; shelf life; statistical analysis; storage time; vegetation; yeasts
Abstract:
... The use of phenolic compounds derived from agricultural by-products could be considered as an eco-friendly strategy for food preservation. In this study a purified phenol extract from olive vegetation water (PEOVW) was explored as a potential bioactive ingredient for meat products using Italian fresh sausage as food model. The research was developed in two steps: first, an in vitro delineation of ...
DOI:
10.1016/j.ijfoodmicro.2016.04.003

17. Chestnut green waste composting for sustainable forest management: Microbiota dynamics and impact on plant disease control

Author:
Valeria Ventorino; Rita Parillo; Antonino Testa; Sharon Viscardi; Francesco Espresso; Olimpia Pepe
Source:
Journal of environmental management 2016 v.166 pp. 168-177
ISSN:
0301-4797
Subject:
Actinomyces; Aspergillus; Azotobacter; Bacilli; Castanea; Cladosporium; Flavobacterium; Fusarium; Mucor; Penicillium; Pseudomonas; Sclerotinia minor; Stenotrophomonas; Streptomyces; Thanatephorus cucumeris; biological control; cleaning; composting; crops; disease control; forests; fungi; green waste; lignocellulose; microbial communities; plant diseases and disorders; plant growth-promoting rhizobacteria; pruning; statistical analysis; sustainable forestry; tomatoes; trees
Abstract:
... Making compost from chestnut lignocellulosic waste is a possible sustainable management strategy for forests that employs a high-quality renewable organic resource. Characterization of the microbiota involved in composting is essential to better understand the entire process as well as the properties of the final product. Therefore, this study investigated the microbial communities involved in the ...
DOI:
10.1016/j.jenvman.2015.10.018

18. Sequencing Insights into Microbial Communities in the Water and Sediments of Fenghe River, China

Author:
Sidan Lu; Yujiao Sun; Xuan Zhao; Lei Wang; Aizhong Ding; Xiaohui Zhao
Source:
Archives of environmental contamination and toxicology 2016 v.71 no.1 pp. 122-132
ISSN:
0090-4341
Subject:
Acinetobacter; Comamonadaceae; Escherichia; Flavobacterium; Pseudomonas; ammonium nitrogen; anthropogenic activities; community structure; environmental factors; high-throughput nucleotide sequencing; microbial communities; microorganisms; nitrate nitrogen; nitrogen; pollution; river water; rivers; sediments; statistical analysis; China
Abstract:
... The connection between microbial community structure and spatial variation and pollution in river waters has been widely investigated. However, water and sediments together have rarely been explored. In this study, Illumina high-throughput sequencing was performed to analyze microbes in 24 water and sediment samples from natural to anthropogenic sources and from headstream to downstream areas. The ...
DOI:
10.1007/s00244-016-0277-5

19. Biochar is a growth-promoting alternative to peat moss for the inoculation of corn with a pseudomonad

Author:
Martyna Głodowska; Barry Husk; Timothy Schwinghamer; Donald Smith
Source:
Agronomy for sustainable development 2016 v.36 no.1 pp. 21
ISSN:
1774-0746
Subject:
Pseudomonas; biochar; chlorophyll; coatings; corn; feedstocks; greenhouse experimentation; hardwood; inoculum; leaf area; mosses and liverworts; nonrenewable resources; peat; seed dressings; seed germination; seeds; softwood; statistical analysis; sustainable agriculture
Abstract:
... Peat moss has been a standard carrier of inoculum for experimentation and in agriculture. Peat moss is, however, a non-renewable resource. Alternatively, biochar could serve as an inoculum carrier. Here, we tested the effect of biochar-based seed coatings as a carrier for the phosphorous-solubilizing Pseudomonas libanensis inoculum, on corn growth after soluble and insoluble P addition. The surviv ...
DOI:
10.1007/s13593-016-0356-z

20. Response of Melissa officinalis Induced by Application of Pseudomonas fluorescens Isolated from Different Agro Climatic Zones of Karnataka

Author:
Sonia Bohra; N. Krithika; M. Nanditha; G. Sudha; C. Sandeep; C.K. Suresh
Source:
Journal of Functional And Environmental Botany 2015 v.5 no.1 pp. 1-5
ISSN:
2231-1750
Subject:
Melissa officinalis; Pseudomonas fluorescens; antioxidants; biomass; biotechnology; chlorophyll; computer software; fluorescence; growth promotion; headache; memory; metabolism; parasympatholytics; plant growth; plant height; plant pathogens; random amplified polymorphic DNA technique; rhizosphere bacteria; soil; statistical analysis; India
Abstract:
... Melissa officinalis is an aromatically important plant grown all over the world. It is used for different medical purposes as tonic, antispasmodic, carminative, diaphoretic, sedative-hypnotic strengthening the memory, relief of stress-induced headache and has antioxidant properties. The fluorescent Pseudomonas have emerged as the largest and potentially most promising group of the plant growth pro ...
DOI:
10.5958/2231-1750.2015.00001.3