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- Author:
- Yaguang Zhao; Fenghua Zhang; Bede Mickan; Dan Wang; Weichao Wang
- Source:
- Plant cell reports 2022 v.41 no.1 pp. 95-118
- ISSN:
- 0721-7714
- Subject:
- roots, etc ; Bacillus (bacteria); agricultural productivity; amino acid metabolism; biosynthesis; caffeine; catalase; chlorophyll; energy; galactose; gene expression regulation; glutathione; malondialdehyde; metabolites; metabolomics; palmitoleic acid; peroxidase; phenylalanine; phytomass; plant growth-promoting rhizobacteria; proline; proteomics; root inoculation; rutin; salt stress; salt tolerance; sodium; soil salinization; superoxide dismutase; sustainable agriculture; toxicity; ubiquinones; wheat; Show all 33 Subjects
- Abstract:
- ... KEY MESSAGE: Herein, the inoculation with strain wp-6 promoted the growth of wheat seedlings by improving the energy production and conversion of wheat seedlings and alleviating salt stress. Soil salinization decreases crop productivity due to high toxicity of sodium ions to plants. Plant growth-promoting rhizobacteria (PGPR) have been demonstrated to alleviate salinity stress. However, the mechan ...
- DOI:
- 10.1007/s00299-021-02788-0
- https://doi.org/10.1007/s00299-021-02788-0
- Author:
- Li Yang; Qi Sun; Yanping Wang; Zhulong Chan
- Source:
- Gene 2021 v.764 pp. 145082
- ISSN:
- 0378-1119
- Subject:
- lateral roots, etc ; Arabidopsis; amino acid metabolism; biochemical pathways; biosynthesis; brassinosteroids; cytokinins; ethylene; genes; gibberellins; hormone metabolism; jasmonic acid; melatonin; proteins; root growth; sequence analysis; stress response; strigolactones; transcriptomics; ubiquitination; zinc finger motif; Show all 21 Subjects
- Abstract:
- ... Melatonin functions as a plant growth regulator in a concentration-dependent manner. In this study, we investigated the effects of melatonin on root growth and dissected underlined mechanisms. The results showed that melatonin up to 1000 μM inhibited primary root growth, but promoted lateral root development. Through RNA sequencing analysis, functions of differentially expressed genes were mainly ...
- DOI:
- 10.1016/j.gene.2020.145082
- https://doi.org/10.1016/j.gene.2020.145082
- Author:
- Fengwei Diao; Zhenhua Dang; Xi Cui; Jing Xu; Bingbing Jia; Shengli Ding; Zhechao Zhang; Wei Guo
- Source:
- Environmental and experimental botany 2021 v.183 pp. 104337
- ISSN:
- 0098-8472
- Subject:
- roots, etc ; Glomus mosseae; Suaeda salsa; amino acid metabolism; area; autotrophs; auxins; biomass; carbon dioxide fixation; dicarboxylic acids; ecosystems; genes; greenhouse experimentation; halophytes; height; information; mycorrhizal fungi; niches; photosynthesis; physiological response; pyridoxine; research; salt tolerance; shoots; soil salinization; starch; sucrose; transcriptomics; transporters; vesicular arbuscular mycorrhizae; Show all 30 Subjects
- Abstract:
- ... As the area of soil salinization increases, the ecological niche of halophytes is important given their high salt tolerance. The physiological response of mycorrhizal halophytes is not completely consistent with that of mycorrhizal glycophytes under salt conditions. However, less information is known about the regulation of genes included by arbuscular mycorrhizal (AM) fungi in halophytes. A green ...
- DOI:
- 10.1016/j.envexpbot.2020.104337
- https://doi.org/10.1016/j.envexpbot.2020.104337
- Author:
- Camilo López-Cristoffanini; Mireia Bundó; Xavier Serrat; Blanca San Segundo; Marta López-Carbonell; Salvador Nogués
- Source:
- crop journal 2021 v.9 no.5 pp. 1154-1168
- ISSN:
- 2214-5141
- Subject:
- roots, etc ; Oryza sativa; amino acid metabolism; chromosomes; cultivars; dehydrins; genotype; hydroponics; landraces; length; mitochondria; plantlets; protective effect; proteomics; rice; salinity; salt stress; salt tolerance; shoots; stress response; tissues; Show all 21 Subjects
- Abstract:
- ... Rice, a major staple, is the most salt-sensitive cereal. High salinity triggers several adaptive responses in rice to cope with osmotic and ionic stress at the physiological, cellular, and molecular levels. A major QTL for salinity tolerance, named Saltol, is present on chromosome 1 of Indian landraces such as Pokkali and Nona Bokra. The early proteomic and physiological responses to salinity in r ...
- DOI:
- 10.1016/j.cj.2020.10.009
- https://doi.org/10.1016/j.cj.2020.10.009
- Author:
- Elaheh Samari; Mohsen Sharifi; Faezeh Ghanati; Elisabeth Fuss; Najmeh Ahmadian Chashmi
- Source:
- Plant cell, tissue, and organ culture 2020 v.140 no.3 pp. 563-576
- ISSN:
- 0167-6857
- Subject:
- roots, etc ; Linum album; amino acid metabolism; arginine; aspartic acid; catechin; chitosan; enzyme activity; glutamic acid; hydrogen peroxide; methionine; nitric oxide; phenylalanine; phenylpropanoids; podophyllotoxin; polyamines; salicylic acid; secondary metabolites; spectroscopy; tyrosine; Show all 20 Subjects
- Abstract:
- ... Due to medicinal value, phenolics are of great interest. Many investigations have already been conducted on Linum album Kotschy ex Boiss to increase these valuable compounds especially lignans. In the present work, the hairy roots of the L. album were treated with 200 mg L⁻¹ chitosan for 12, 24, 48, and 72 h and the lignan contents were determined by high performance liquid chromatography (HPLC). ...
- DOI:
- 10.1007/s11240-019-01753-w
- https://doi.org/10.1007/s11240-019-01753-w
- Author:
- Huakang Liu; Yanluo Xie; Junjie Li; Guoquan Zeng; Hao Li; Fei Xu; Su Feng; Heng Xu
- Source:
- Chemosphere 2020 v.242 pp. 125164
- ISSN:
- 0045-6535
- Subject:
- roots, etc ; Chrysopogon zizanioides; Serratia; amino acid metabolism; bacterial communities; biogas; cadmium; carbohydrates; community structure; energy; fertilizers; genes; harvesting; phytoremediation; polluted soils; pollution; rhizosphere; shoots; soil bacteria; straw; Show all 20 Subjects
- Abstract:
- ... Phytoremediation is an economical strategy to harvest cadmium (Cd) from contaminated soil, but the efficiency of phytoremediation was affected by many factors. This study investigated the potential of Serratia sp. K3 (K3) assisted with straw biogas residue (SBR) or leavening fertilizer (LF) on improving the Cd migration efficiency and micro-environment in soil-vetiveria zizanioides L. system. The ...
- DOI:
- 10.1016/j.chemosphere.2019.125164
- https://doi.org/10.1016/j.chemosphere.2019.125164
- Author:
- Cao Xiaochuang; Wu Meiyan; Zhu Chunquan; Zhong Chu; Zhang Junhua; Zhu Lianfeng; Wu Lianghuan; Jin Qianyu
- Source:
- Plant cell reports 2020 v.39 no.3 pp. 363-379
- ISSN:
- 0721-7714
- Subject:
- roots, etc ; Oryza sativa; aeration; alanine; amino acid metabolism; ammonia; ammonium; antioxidant activity; asparagine; biomass; carbohydrates; cultivars; enzyme activity; gamma-aminobutyric acid; gas chromatography-mass spectrometry; gene expression regulation; genes; genotype; glutamate dehydrogenase; glutamic acid; highlands; hydroponics; isocitrate dehydrogenase; leaves; nitrates; nitrogen; oxygen; photosynthesis; rhizosphere; rice; stable isotopes; Show all 31 Subjects
- Abstract:
- ... KEY MESSAGE: Aeration stimulates the rice growth and nitrogen (N) metabolism; in which, the glutamate accumulation limited by the glutamate dehydrogenase pathway after ammonia uptake may control root N metabolism during aeration. Increasing rhizosphere oxygen content greatly improves rice growth and biomass. To study the intrinsic mechanism involved in nitrogen (N) metabolism, a hydroponic experim ...
- DOI:
- 10.1007/s00299-019-02496-w
- https://doi.org/10.1007/s00299-019-02496-w
- Author:
- Jeffrey D. Kiiskila; Kefeng Li; Dibyendu Sarkar; Rupali Datta
- Source:
- Chemosphere 2020 v.240 pp. 124961
- ISSN:
- 0045-6535
- Subject:
- roots, etc ; Chrysopogon zizanioides; abiotic stress; acid mine drainage; amino acid metabolism; biochemical pathways; cell respiration; glutathione; metabolites; metabolomics; metals; mining; nitrogen; ornithine; oxaloacetic acid; particulates; phospholipids; phosphorus; photosynthesis; shoots; toxicity; Illinois; Show all 22 Subjects
- Abstract:
- ... Acid mine drainage (AMD) is a sulfuric discharge containing metals and particulates that can spread to nearby water sources, imposing toxicity and physical stress to living things. We have shown that vetiver grass (Chrysopogon zizanioides) is capable of tolerating and treating AMD-impacted water from the abandoned Tab-Simco mining site from southern Illinois, though little is known about its toler ...
- DOI:
- 10.1016/j.chemosphere.2019.124961
- https://doi.org/10.1016/j.chemosphere.2019.124961
- Author:
- Yafei Sun; Ke Song; Lijuan Sun; Qin Qin; Tingting Jiang; Qiaoming Jiang; Yong Xue
- Source:
- Plant physiology and biochemistry 2020 v.149 pp. 111-120
- ISSN:
- 0981-9428
- Subject:
- roots, etc ; Triticum aestivum; amino acid composition; amino acid metabolism; biosynthesis; cysteine; gene expression; genes; glutamate-ammonia ligase; glutathione; growth performance; homeostasis; methionine; nitrates; nitrogen; phenylalanine; quantitative polymerase chain reaction; reverse transcriptase polymerase chain reaction; seedlings; sequence analysis; shoots; total nitrogen; transcription (genetics); transcriptomics; transporters; wheat; zinc; Show all 27 Subjects
- Abstract:
- ... Nitrogen (N) is the essential nutrient for wheat growth and development, its accumulation and metabolism controlled by many other elements. Zinc (Zn) is one of the important elements which tends to have effects on plant N homeostasis. Here in our study, 0 μM and 5 μM Zn was applied to the wheat seedlings culturing in 5 mM (+N) and 0.5 mM (-N) N treatments, respectively. The results showed that the ...
- DOI:
- 10.1016/j.plaphy.2020.01.038
- https://doi.org/10.1016/j.plaphy.2020.01.038
- Author:
- Swati Gupta; Shashank Kumar Mishra; Sankalp Misra; Vivek Pandey; Lalit Agrawal; Chandra Shekhar Nautiyal; Puneet Singh Chauhan
- Source:
- Plant physiology and biochemistry 2020 v.151 pp. 88-102
- ISSN:
- 0981-9428
- Subject:
- roots, etc ; Cicer arietinum; Western blotting; adenosine kinase; amino acid metabolism; ascorbate peroxidase; chickpeas; chitinase; climatic factors; drought; drought tolerance; energy metabolism; gene expression regulation; genetic improvement; glutamate-ammonia ligase; glutathione transferase; glyceraldehyde-3-phosphate dehydrogenase; heat shock proteins; homocysteine; isocitrate dehydrogenase; land degradation; malate dehydrogenase; matrix-assisted laser desorption-ionization mass spectrometry; methyltransferases; nitrogen; protein content; protein disulfide-isomerase; proteomics; quantitative polymerase chain reaction; seedlings; signal transduction; stress response; thioredoxins; transaldolase; two-dimensional gel electrophoresis; water stress; Show all 36 Subjects
- Abstract:
- ... Global warming has reached an alarming situation, which led to a dangerous climatic condition. The irregular rainfalls and land degradation are the significant consequences of these climatic changes causing a decrease in crop productivity. The effect of drought and its tolerance mechanism, a comparative roots proteomic analysis of chickpea seedlings grown under hydroponic conditions for three week ...
- DOI:
- 10.1016/j.plaphy.2020.03.005
- https://doi.org/10.1016/j.plaphy.2020.03.005
- Author:
- Neus Sanmartín; Paloma Sánchez-Bel; Victoria Pastor; Julia Pastor-Fernández; Diego Mateu; María José Pozo; Miguel Cerezo; Víctor Flors
- Source:
- Plant science 2020 v.298 pp. 110595
- ISSN:
- 0168-9452
- Subject:
- roots, etc ; Botrytis cinerea; amino acid metabolism; antimicrobial properties; infection; leaves; lignans; metabolome; metabolomics; oxylipins; pathogenesis-related proteins; pathogens; plant hormones; shoots; tomatoes; vesicular arbuscular mycorrhizae; Show all 16 Subjects
- Abstract:
- ... Arbuscular mycorrhizal symbiosis is restricted in roots, but it also improves shoot responses against leaf challenges, a phenomenon known as Mycorrhiza-Induced Resistance (MIR). This study focuses on mycorrhizal root signals that may orchestrate shoot defence responses. Metabolomic analysis of non-mycorrhizal and mycorrhizal plants upon Botrytis cinerea infection showed that roots rearrange their ...
- DOI:
- 10.1016/j.plantsci.2020.110595
- https://doi.org/10.1016/j.plantsci.2020.110595
- Author:
- Ranjeet Kumar; Khanjan Trivedi; K. G. Vijay Anand; Arup Ghosh
- Source:
- Journal of applied phycology 2020 v.32 no.1 pp. 599-613
- ISSN:
- 0921-8971
- Subject:
- roots, etc ; DNA; Kappaphycus alvarezii; Zea mays; amino acid metabolism; amino acids; antioxidant activity; auxins; carbon; cell walls; corn; crops; drought; drought tolerance; gene expression regulation; genes; gibberellic acid; glutathione transferase; grain yield; high-throughput nucleotide sequencing; hormone metabolism; irrigation; lipid metabolism; lipids; messenger RNA; nitrogen metabolism; nutrient content; peroxidases; plant extracts; root growth; seed development; soil drenching; soil water; starch; sucrose; transcription (genetics); transcriptome; water stress; Show all 38 Subjects
- Abstract:
- ... Seaweed extracts have been reported to be effective crop biostimulants having low carbon foot print. However, the mechanism of their action on crops has remained elusive due to dearth of studies. Kappaphycus alvarezii seaweed extract (K-sap) has been found to increase the yield of several crops as well as impart drought tolerance. Here, an attempt was made to get a global view of the transcriptome ...
- DOI:
- 10.1007/s10811-019-01938-y
- https://doi.org/10.1007/s10811-019-01938-y
- Author:
- Shuang Xiao; Liantao Liu; Yongjiang Zhang; Hongchun Sun; Ke Zhang; Zhiying Bai; Hezhong Dong; Yuchun Liu; Cundong Li
- Source:
- BMC plant biology 2020 v.20 no.1 pp. 328
- ISSN:
- 1471-2229
- Subject:
- fine roots, etc ; Gossypium hirsutum; amino acid metabolism; biosynthesis; carbohydrate metabolism; cotton; cutin; drought; drought tolerance; energy metabolism; fatty acid metabolism; gene expression regulation; hormone metabolism; nutrient uptake; plant hormones; proteome; proteomics; root growth; root systems; secondary metabolites; soil; suberin; water content; water stress; Show all 24 Subjects
- Abstract:
- ... BACKGROUND: Cotton (Gossypium hirsutum L.) is one of the most important cash crops worldwide. Fine roots are the central part of the root system that contributes to plant water and nutrient uptake. However, the mechanisms underlying the response of cotton fine roots to soil drought remains unclear. To elucidate the proteomic changes in fine roots of cotton plants under drought stress, 70–75% and 4 ...
- DOI:
- 10.1186/s12870-020-02531-z
- https://doi.org/10.1186/s12870-020-02531-z
- Author:
- Sónia Silva; Tiago P. Ribeiro; Conceição Santos; Diana C.G.A. Pinto; Artur M.S. Silva
- Source:
- Journal of hazardous materials 2020 v.399 pp. 122982
- ISSN:
- 0304-3894
- Subject:
- roots, etc ; Triticum aestivum; alanine; amino acid metabolism; antioxidants; aspartic acid; biochemical pathways; biosynthesis; citrates; metabolites; multiple cropping; phenylalanine; photosynthesis; plant development; renewable energy sources; serine; titanium dioxide; tryptophan; tyrosine; valine; wheat; Show all 21 Subjects
- Abstract:
- ... TiO₂-nanoparticles (TiO₂-NP) have the potential to impair plant development. Nevertheless, the metabolic processes behind the physiological responses to TiO₂-NP are still far from being fully understood. In this study, Triticum aestivum plants were exposed for 21 days to different concentrations (0; 5; 50; 150 mg L⁻¹) of TiO₂-NP (P25). After treatment, the metabolite profiles of roots and leaves w ...
- DOI:
- 10.1016/j.jhazmat.2020.122982
- https://doi.org/10.1016/j.jhazmat.2020.122982
- Author:
- Li Sun; Dong-Wei Di; Guangjie Li; Yilin Li; Herbert J. Kronzucker; Weiming Shi
- Source:
- Journal of plant physiology 2020 v.246-247 pp. 153137
- ISSN:
- 0176-1617
- Subject:
- roots, etc ; Oryza sativa; absorption; amino acid metabolism; amino acids; ammonium; ammonium sulfate; carbon; gene expression regulation; genes; nitrogen; nitrogen metabolism; plant hormones; rice; root growth; seedlings; sequence analysis; shoots; starvation; sugars; transcription factors; transcriptomics; Show all 22 Subjects
- Abstract:
- ... NH₄⁺ is not only the primary nitrogen for rice, a well-known NH₄⁺ specialist, but is also the chief limiting factor for its production. Limiting NH₄⁺ triggers a series of physiological and biochemical responses that help rice optimise its nitrogen acquisition. However, the dynamic nature and spatial distribution of the adjustments at the whole plant level during this response are still unknown. He ...
- DOI:
- 10.1016/j.jplph.2020.153137
- https://doi.org/10.1016/j.jplph.2020.153137
- Author:
- Liangliang Sun; Ming Cao; Fei Liu; Yibo Wang; Jinpeng Wan; Ruling Wang; Huakun Zhou; Wenying Wang; Jin Xu
- Source:
- Plant and soil 2020 v.456 no.1-2 pp. 207-221
- ISSN:
- 0032-079X
- Subject:
- lateral roots, etc ; Arabidopsis thaliana; alpine meadows; amino acid metabolism; antioxidant activity; auxins; carbon; metabolome; metabolomics; mushrooms; nitrogen metabolism; root growth; root systems; seedling growth; soil; transcriptome; volatile organic compounds; China; Show all 18 Subjects
- Abstract:
- ... AIMS: The volatile organic compounds (VOCs) produced by soil microbes modulated plant growth and development. Floccularia luteovirens, an edible mushroom, is beneficial to the growth of alpine meadow plants on the Qinghai-Tibet Plateau. We aimed to elucidate the physiological and molecular mechanisms underlying the mushroom fungal VOC-mediated plant growth and development. METHODS: Here, we invest ...
- DOI:
- 10.1007/s11104-020-04709-8
- https://doi.org/10.1007/s11104-020-04709-8
- Author:
- Yuguang Wang; Piergiorgio Stevanato; Chunhua Lv; Renren Li; Gui Geng
- Source:
- Journal of agricultural and food chemistry 2019 v.67 no.21 pp. 6056-6073
- ISSN:
- 1520-5118
- Subject:
- roots, etc ; amino acid metabolism; antioxidant enzymes; cell walls; crop yield; crops; cultivars; engineering; gene expression regulation; genotype; leaves; photosynthesis; proline; protein synthesis; proteins; proteome; proteomics; reactive oxygen species; salinity; salt stress; salt tolerance; signal transduction; sodium; soil salinity; sugar beet; tricarboxylic acid cycle; Show all 26 Subjects
- Abstract:
- ... Soil salinity is one of the major constraints affecting agricultural production and crop yield. A detailed understanding of the underlying physiological and molecular mechanisms of the different genotypic salt tolerance response in crops under salinity is therefore a prerequisite for enhancing this tolerance. In this study, we explored the changes in physiological and proteome profiles of salt-sen ...
- DOI:
- 10.1021/acs.jafc.9b00244
- https://doi.org/10.1021/acs.jafc.9b00244
- Author:
- Sucheta Patil; Manisha Shinde; Ramya Prashant; Narendra Kadoo; Anuradha Upadhyay; Vidya Gupta
- Source:
- Journal of proteome research 2019 v.19 no.2 pp. 583-599
- ISSN:
- 1535-3907
- Subject:
- roots, etc ; Vitis; amino acid metabolism; biosynthesis; chlorophyll; farmers; grafting (plants); irrigation; longevity; metabolites; photosynthesis; plant growth; proteins; proteome; proteomics; rhizosphere; rootstocks; salinity; salt stress; salt tolerance; soil salinity; stress response; table grapes; vines; Show all 24 Subjects
- Abstract:
- ... Thompson Seedless, a commonly grown table grape variety, is sensitive to salinity when grown on its own roots, and therefore, it is frequently grafted onto salinity-tolerant wild grapevine rootstocks. Rising soil salinity is a growing concern in irrigated agricultural systems. The accumulation of salts near the root zone severely hampers plant growth, leading to a decrease in the productive lifesp ...
- DOI:
- 10.1021/acs.jproteome.9b00420
- https://doi.org/10.1021/acs.jproteome.9b00420
- Author:
- Yan Zhang; Xiaomei Yang; Shuang Wang; Shuang Song
- Source:
- Journal of agricultural and food chemistry 2019 v.67 no.36 pp. 10048-10058
- ISSN:
- 1520-5118
- Subject:
- roots, etc ; Alzheimer disease; Panax ginseng; amino acid metabolism; animal models; antioxidant activity; apoptosis; bioactive compounds; cognitive disorders; electron transport chain; functional foods; ginsenosides; herbal medicines; metabolomics; mitochondria; rats; rhizomes; Show all 17 Subjects
- Abstract:
- ... Ginseng, the roots and rhizomes of Panax ginseng C. A. Meyer, is used not only as a herbal medicine but also as a functional food to support body functions. Ginsenoside Rg3 (GRg3) is a major bioactive component in ginseng. In this study, the beneficial effects of GRg3 on rats with Alzheimer’s disease (AD) were evaluated via the behavioral experiment and antioxidant capacity. Moreover, metabolomic ...
- DOI:
- 10.1021/acs.jafc.9b03793
- https://doi.org/10.1021/acs.jafc.9b03793
- Author:
- Tatiane V. Debiasi; Anderson K. Calzavara; Ligia M. I. da Silva; Janaina G. da Silva; Edmilson Bianchini; José A. Pimenta; Renata Stolf-Moreira; Marcos P. M. Aidar; Ladaslav Sodek; Halley C. Oliveira
- Source:
- Acta physiologiae plantarum 2019 v.41 no.8 pp. 131
- ISSN:
- 0137-5881
- Subject:
- roots, etc ; Cariniana estrellensis; Eptesicus brasiliensis; Eugenia brasiliensis; Heliocarpus americanus; Neotropics; amino acid metabolism; ammonium; asparagine; canopy; forests; glutamine; habitats; hydroponics; indigenous species; leaves; light intensity; nitrates; nitrogen; nitrogen metabolism; sap; seedlings; shade tolerance; stable isotopes; trees; understory; xylem; Show all 27 Subjects
- Abstract:
- ... Despite the importance of nitrogen for plant performance, few studies have addressed the nitrogen assimilation and amino acid metabolism of Neotropical trees. This study analyzed the nitrogen use strategies of tree species native to the Brazilian Atlantic Forest with different degrees of shade tolerance: Heliocarpus popayanensis (a shade-intolerant species), Cariniana estrellensis (a shade-toleran ...
- DOI:
- 10.1007/s11738-019-2923-9
- https://doi.org/10.1007/s11738-019-2923-9
- Author:
- Yuting Wang; Wenjie Ren; Yan Li; Yongfeng Xu; Ying Teng; Peter Christie; Yongming Luo
- Source:
- Science of the total environment 2019 v.646 pp. 212-219
- ISSN:
- 0048-9697
- Subject:
- roots, etc ; Medicago sativa; alfalfa; amino acid metabolism; carbohydrate metabolism; carbohydrates; discriminant analysis; energy transfer; fatty acid metabolism; fatty acids; greenhouses; hydroponics; mass spectrometry; metabolites; phthalates; rhizosphere; root exudates; soil; tricarboxylic acid cycle; Show all 19 Subjects
- Abstract:
- ... Root exudates are the main media of information communication and energy transfer between plant roots and the soil. Understanding the response of root exudates to contamination stress is crucial in revealing the rhizoremediation mechanisms. Here, we investigate the response of alfalfa root exudates to bis(2-ethylhexyl) phthalate (DEHP) stress based on nontargeted metabolomic analysis. Alfalfa root ...
- DOI:
- 10.1016/j.scitotenv.2018.07.247
- https://doi.org/10.1016/j.scitotenv.2018.07.247
- Author:
- Saqib Bilal; Raheem Shahzad; Abdul Latif Khan; Ahmed Al-Harrasi; Chang Kil Kim; In-Jung Lee
- Source:
- Journal of hazardous materials 2019 v.379 pp. 120824
- ISSN:
- 0304-3894
- Subject:
- roots, etc ; Glycine max; NAD(P)H dehydrogenase (quinone); Talaromyces funiculosus; abscisic acid; adenosinetriphosphatase; aluminum; amino acid metabolism; antioxidant activity; chalcone isomerase; chromium; copper; endophytes; free amino acids; gene expression regulation; genes; gibberellic acid; glutathione transferase; heavy metals; hormones; indole acetic acid; isoflavones; jasmonic acid; lead; nickel; peroxidase; pollution; proteins; proteomics; quinones; reactive oxygen species; screening; shoots; soil; soybeans; toxicity; Show all 36 Subjects
- Abstract:
- ... This study investigates the stress-mitigating effects of endophytic Penicillium funiculosum LHL06 on soybean roots via modulation of physio-biochemical, molecular, and proteomic responses to combined heavy metal (Ni, Cu, Pb, Cr, and Al) toxicity. Preliminary screening revealed that LHL06 can tolerate and remediate combined heavy metal contamination in its media and upregulate gibberellins (GA1, GA ...
- DOI:
- 10.1016/j.jhazmat.2019.120824
- https://doi.org/10.1016/j.jhazmat.2019.120824
- Author:
- Mohammad Reza Ghaffari; Mehdi Mirzaei; Mehdi Ghabooli; Behnam Khatabi; Yunqi Wu; Masoud Zabet-Moghaddam; Ghasem Mohammadi-Nejad; Paul A. Haynes; Mohammad Reza Hajirezaei; Mozhgan Sepehri; Ghasem Hosseini Salekdeh
- Source:
- Environmental and experimental botany 2019 v.157 pp. 197-210
- ISSN:
- 0098-8472
- Subject:
- roots, etc ; Piriformospora indica; amino acid metabolism; autophagy; barley; drought; electron transport chain; endophytes; energy; fungi; leaves; metabolomics; oxidative stress; photorespiration; proteomics; stress response; transporters; water stress; Show all 18 Subjects
- Abstract:
- ... The root fungal endophyte Piriformospora indica promotes the growth and survival of plants belonging to a number of species when exposed to various abiotic stresses, including drought, a major constraint of crop productivity. The application of 'omics technologies has revealed much of the molecular basis of the plant drought stress response. Here, the proteomic and metabolomic response of the leav ...
- DOI:
- 10.1016/j.envexpbot.2018.10.002
- https://doi.org/10.1016/j.envexpbot.2018.10.002
- Author:
- Naeem Khan; Asghari Bano; Mohammad Atikur Rahman; Bala Rathinasabapathi; Md Ali Babar
- Source:
- Plant, cell and environment 2019 v.42 no.1 pp. 115-132
- ISSN:
- 0140-7791
- Subject:
- roots, etc ; Cicer arietinum; alanine; allantoin; amino acid metabolism; arginine; aspartic acid; biochemical pathways; biosynthesis; chickpeas; chlorophyll; choline; discriminant analysis; drought; drought tolerance; gamma-aminobutyric acid; genetic improvement; genetic variation; glucosamine; guanine; histidine; least squares; leaves; mass spectrometry; metabolome; metabolomics; phenylalanine; proline; secondary metabolites; shoots; tryptophan; tyrosine; ultra-performance liquid chromatography; water content; water stress; Show all 35 Subjects
- Abstract:
- ... Genetic improvement for drought tolerance in chickpea requires a solid understanding of biochemical processes involved with different physiological mechanisms. The objective of this study is to demonstrate genetic variations in altered metabolic levels in chickpea varieties (tolerant and sensitive) grown under contrasting water regimes through ultrahigh‐performance liquid chromatography/high‐resol ...
- DOI:
- 10.1111/pce.13195
- https://doi.org/10.1111/pce.13195
- Author:
- Jinghui Sun; Chuanxin Jiao; Yue Ma; Jianguang Chen; Wei Wu; Shuying Liu
- Source:
- Phytochemical analysis 2018 v.29 no.4 pp. 387-397
- ISSN:
- 0958-0344
- Subject:
- roots, etc ; Panax ginseng; amino acid metabolism; biochemical pathways; biomarkers; chemical constituents of plants; energy; ginsenosides; lipid metabolism; lipids; liquid chromatography; mass spectrometry; metabolites; metabolomics; multivariate analysis; rats; renal function; rhizomes; urine; Show all 19 Subjects
- Abstract:
- ... INTRODUCTION: Red ginseng (RG) is one of the main processed products of the roots and rhizomes of Panax ginseng C.A. Meyer and is used for anti‐ageing. But how metabonomic influences of RG on the progress of ageing are less researched. OBJECTIVE: A metabonomic method was developed to study the characters of the ageing process and the effects of total ginsenosides of red ginseng (TGRG) on the progr ...
- DOI:
- 10.1002/pca.2758
- https://doi.org/10.1002/pca.2758
- Author:
- Poonam Yadav; Ravdeep Kaur; Mukesh Kumar Kanwar; Anket Sharma; Vinod Verma; Geetika Sirhindi; Renu Bhardwaj
- Source:
- Ecotoxicology and environmental safety 2018 v.147 pp. 725-734
- ISSN:
- 0147-6513
- Subject:
- roots, etc ; Brassica juncea; amino acid metabolism; amino acids; ascorbate peroxidase; biomarkers; copper; enzyme activity; glutathione; glutathione dehydrogenase (ascorbate); glutathione-disulfide reductase; hydrogen peroxide; messenger RNA; monodehydroascorbate reductase (NADH); oxidative stress; presoaking; reverse transcriptase polymerase chain reaction; seedlings; shoots; stress tolerance; superoxide anion; Show all 21 Subjects
- Abstract:
- ... The aim of the present study was to explore the effect of exogenous application of castasterone (CS) on physiologic and biochemical responses in Brassica juncea seedlings under copper (Cu) stress. Seeds were pre-soaked in different concentrations of CS and grown for 7 days under various levels of Cu. The exposure of B. juncea to higher levels of Cu led to decrease of morphologic parameters, with p ...
- DOI:
- 10.1016/j.ecoenv.2017.09.035
- https://doi.org/10.1016/j.ecoenv.2017.09.035
- Author:
- Jwakyung Sung; Hyejin Yun; Seunga Back; Alisdair R. Fernie; Yangmin X. Kim; Yejin Lee; Seulbi Lee; Deogbae Lee; Jaekwang Kim
- Source:
- Zeitschrift für Pflanzenernährung und Bodenkunde 2018 v.181 no.5 pp. 777-786
- ISSN:
- 1436-8730
- Subject:
- roots, etc ; amino acid metabolism; amino acids; cabbage; calcium; cations; energy; glycolysis; nitrogen; nutrient content; nutrient deficiencies; nutrient solutions; nutrients; organic acids and salts; phosphorus; potassium; protein synthesis; secondary metabolites; shikimate pathway; shoots; sugars; tricarboxylic acid cycle; Show all 22 Subjects
- Abstract:
- ... The responses of metabolic networks to mineral deficiency are poorly understood. Here, we conducted a detailed, broad‐scale analysis of macronutrient concentrations and metabolic changes in the shoots and roots of cabbage (Brassica rapa L. ssp. pekinensis) plants in response to N, P, K, Ca, and Mg deficiency in nutrient solution. To standardize individual macronutrient‐deficient treatments, the co ...
- DOI:
- 10.1002/jpln.201800001
- https://doi.org/10.1002/jpln.201800001
- Author:
- Ikram Belghith; Jennifer Senkler; Tatjana Hildebrandt; Chedly Abdelly; Hans-Peter Braun; Ahmed Debez
- Source:
- Plant physiology and biochemistry 2018 v.130 pp. 20-29
- ISSN:
- 0981-9428
- Subject:
- roots, etc ; amino acid metabolism; biogenesis; carbohydrates; ecosystems; energy metabolism; geographical distribution; glutathione; halophytes; hydroponics; phytomass; plant growth; potassium; protein composition; proteins; proteome; proteomics; reactive oxygen species; rhizosphere; ribosomes; salinity; salt stress; salt tolerance; seedlings; sodium; sodium chloride; water content; Show all 27 Subjects
- Abstract:
- ... NaCl stress is a major abiotic stress factor limiting the productivity and the geographical distribution of many plant species. Although halophytes are able to withstand and even to require salt in the rhizosphere, roots are the most sensitive organs to salinity. Here, we investigate the variability of salt tolerance in two Tunisian accessions of the halophyte Cakile maritima (Raoued and Djerba, h ...
- DOI:
- 10.1016/j.plaphy.2018.06.029
- https://doi.org/10.1016/j.plaphy.2018.06.029
- Author:
- Laura Ceballos-Laita; Elain Gutierrez-Carbonell; Hiroyuki Imai; Anunciación Abadía; Matsuo Uemura; Javier Abadía; Ana Flor López-Millán
- Source:
- Journal of proteomics 2018 pp. -
- ISSN:
- 1874-3919
- Subject:
- roots, etc ; Solanum lycopersicum; amino acid metabolism; cell walls; defense mechanisms; energy; glycolysis; hydrolases; lignification; manganese; oxidative phosphorylation; pathogenesis-related proteins; peroxidases; protein composition; proteome; proteomics; pyruvic acid; suberization; tomatoes; toxicity; two-dimensional gel electrophoresis; Show all 21 Subjects
- Abstract:
- ... The aim of this work was to assess the effects of manganese (Mn) toxicity on the proteome of tomato roots using two proteomic approaches, shotgun and two-dimensional electrophoresis. The shotgun approach yielded 367 reliable proteins, whereas the 2-DE approach detected 340 consistent spots. The 2-DE method found 54 proteins changing in relative abundance in the excess Mn treatment, whereas the sho ...
- DOI:
- 10.1016/j.jprot.2018.06.016
- https://doi.org/10.1016/j.jprot.2018.06.016
- Author:
- Ai Zhen; Zhi Zhang; Xiaoqing Jin; Tao Liu; Wenqi Ren; Xiaohui Hu
- Source:
- Scientia horticulturae 2018 v.227 pp. 117-123
- ISSN:
- 0304-4238
- Subject:
- roots, etc ; absorption; amino acid metabolism; ammonia; ammonium; ammonium nitrogen; aspartate transaminase; calcium; calcium nitrate; cultivars; deamination; foliar spraying; gamma-aminobutyric acid; glutamate dehydrogenase; glutamic acid; hydroponics; leaves; metabolic diseases; muskmelons; nitrate nitrogen; nitrate reductase; nitrogen; plant growth; pyruvic acid; seedlings; Show all 25 Subjects
- Abstract:
- ... The potential of exogenous γ-aminobutyric acid (GABA) application to improve the NO3−-N absorption and assimilation in Ca(NO3)2-treated muskmelon seedlings was investigated in ‘Yipintianxia 208’, a salt-sensitive melon cultivar grown in a deep-flow hydroponic system. Plants were treated under control or 80mM Ca(NO3)2 stress conditions with or without foliar spraying 50mM GABA. We found that under ...
- DOI:
- 10.1016/j.scienta.2017.09.025
- https://doi.org/10.1016/j.scienta.2017.09.025
- Author:
- Hannaneh Tashackori; Mohsen Sharifi; Najmeh Ahmadian Chashmi; Mehrdad Behmanesh; Naser Safaie
- Source:
- Planta 2018 v.248 no.5 pp. 1289-1306
- ISSN:
- 0032-0935
- Subject:
- roots, etc ; Linum album; Piriformospora indica; alanine; amino acid metabolism; biochemical pathways; biosynthesis; biotic stress; cell culture; cell walls; cinnamic acid; cinnamoyl-CoA reductase; cinnamyl alcohol dehydrogenase; elicitors; ferulic acid; free amino acids; fungi; gene expression; gene expression regulation; genes; glutamic acid; kaempferol; lignin; myricetin; phenylalanine; phenylalanine ammonia-lyase; podophyllotoxin; salicylic acid; secondary metabolites; serine; stress tolerance; tyrosine; Show all 32 Subjects
- Abstract:
- ... MAIN CONCLUSION: Elicitation of Linum album hairy roots by Piriformospora indica cell wall induced the target genes and specific metabolites in phenylpropanoid pathway and shifted the amino acid metabolism toward the phenolic compound production. Plants have evolved complex mechanisms to defend themselves against various biotic stresses. One of these responses is the production of metabolites that ...
- DOI:
- 10.1007/s00425-018-2973-z
- https://doi.org/10.1007/s00425-018-2973-z
- Author:
- L.‐L. Sun; Y.‐P. Du; Q.‐Y. Duan; H. Zhai
- Source:
- Australian journal of grape and wine research 2018 v.24 no.2 pp. 181-189
- ISSN:
- 1322-7130
- Subject:
- roots, etc ; Vitis vinifera; amino acid metabolism; carbohydrate metabolism; citrates; freezing point; frost; frost injury; frost resistance; heat stress; leaves; metabolites; metabolomics; root zone temperature; seedlings; serine; shoots; threonine; tricarboxylic acid cycle; Show all 19 Subjects
- Abstract:
- ... BACKGROUND AND AIMS: Soil temperature is an important factor that regulates the response of shoots to extreme temperature conditions, such as heat stress. Little information is known, however, about the role that soil temperature plays in regulating the response of grapevine leaves to frost. The aim of this work was to explore the effect of soil temperature on the frost resistance of leaves and to ...
- DOI:
- 10.1111/ajgw.12328
- https://doi.org/10.1111/ajgw.12328
- Author:
- Chunxia Zhang; Sen Meng; Mingjun Li; Zhong Zhao; Torgny Näsholm
- Source:
- Tree physiology 2018 v.38 no.11 pp. 1672-1684
- ISSN:
- 1758-4469
- Subject:
- fine roots, etc ; Populus simonii; amino acid metabolism; amino acids; ammonium; chlorophyll; data collection; drought; ecosystems; gene expression regulation; genes; metabolomics; nitrates; nitrogen; nutrient uptake; photosynthesis; plant response; transcriptome; transcriptomics; transporters; tree physiology; water stress; Show all 22 Subjects
- Abstract:
- ... Understanding the regulation of plant responses to drought and low nitrogen (N) stresses is necessary to improve N use in water-limited lands, maintaining the sustainable and healthy development of ecosystems. In the present study, we investigated morphological, physiological and transcriptome changes in Populus simonii Carr. root responding to long-term drought and low N stresses. Both stresses r ...
- DOI:
- 10.1093/treephys/tpy085
- https://doi.org/10.1093/treephys/tpy085
- Author:
- Hui Cao; Xiaolin Ni; Caiyun Zhang; Wenshuo Shi; Yuxing Xu; Yueming Yan; Feixiong Zhang
- Source:
- Acta physiologiae plantarum 2017 v.39 no.10 pp. 223
- ISSN:
- 0137-5881
- Subject:
- roots, etc ; amino acid metabolism; carbon metabolism; cell nucleolus; energy; glyceraldehyde-3-phosphate dehydrogenase; heat; homeostasis; isocitrate dehydrogenase; methyltransferases; mitochondria; phosphatidylinositol 3-kinase; plant growth; principal component analysis; protein synthesis; protein-protein interactions; proteins; proteome; proteomics; seed germination; tandem mass spectrometry; transcription (genetics); translation (genetics); two-dimensional gel electrophoresis; wheat; Show all 25 Subjects
- Abstract:
- ... Wortmannin is an efficient inhibitor of phosphatidylinositol 3-kinases that is involved in normal plant growth. In this study, we performed the global proteomic analysis of the effects of wortmannin on wheat primary roots during seed germination. Wortmannin significantly inhibited the growth of wheat primary roots in a macroscopic level, and damaged the fine structure of nucleoli and mitochondria ...
- DOI:
- 10.1007/s11738-017-2511-9
- https://doi.org/10.1007/s11738-017-2511-9
- Author:
- Christoph-Martin Geilfus; Sebastien Christian Carpentier; Aljoša Zavišić; Andrea Polle
- Source:
- Journal of proteomics 2017 v.169 pp. 33-40
- ISSN:
- 1874-3919
- Subject:
- fine roots, etc ; Fagus sylvatica; amino acid metabolism; biogenesis; economic valuation; fertilizer application; leaves; phosphorus; phosphorus fertilizers; proteins; proteome; proteomics; root systems; soil; temperate forests; tissues; trees; triple superphosphate; Europe; Show all 19 Subjects
- Abstract:
- ... Phosphorus is often the least available macronutrient in soil. Lack in phosphorus has detrimental effect on growth and biomass production of European Fagus sylvatica L., a major trees species in temperate forests. In contrast to leaf tissues, few studies have examined changes in the root system and no study has ever investigated the proteomic changes affected in beech roots by a lack in available ...
- DOI:
- 10.1016/j.jprot.2017.06.012
- https://doi.org/10.1016/j.jprot.2017.06.012
- Author:
- Xingwang Yu; Aijun Yang; Andrew T. James
- Source:
- Crop & pasture science 2017 v.68 no.7 pp. 609-619
- ISSN:
- 1836-0947
- Subject:
- roots, etc ; amino acid metabolism; bioinformatics; carbohydrate metabolism; crop production; drought; drought tolerance; energy metabolism; genotype; leaves; protein synthesis; proteins; proteomics; soybeans; two-dimensional gel electrophoresis; water stress; Australia; Show all 17 Subjects
- Abstract:
- ... Water deficit is a serious environmental stress during the soybean growth and production season in Australia. Soybean has evolved complex response mechanisms to cope with drought stress through multiple physiological processes. In this study, the roots of a previously identified drought-tolerant soybean genotype, G21210, and a sensitive genotype, Valder, were subjected to comparative proteomic ana ...
- DOI:
- 10.1071/CP17209
- https://doi.org/10.1071/CP17209
- Author:
- Xiang You; Lin-Tong Yang; Yi-Ping Qi; Peng Guo; Ning-Wei Lai; Xin Ye; Qiang Li; Li-Song Chen
- Source:
- Journal of plant physiology 2017 v.218 pp. 249-257
- ISSN:
- 0176-1617
- Subject:
- roots, etc ; Citrus maxima; Citrus sinensis; amino acid metabolism; cytoskeleton; energy; leaf protein; leaves; manganese; photorespiration; protein composition; pummelos; reactive oxygen species; seedlings; signal transduction; stress response; two-dimensional gel electrophoresis; Show all 17 Subjects
- Abstract:
- ... Manganese (Mn)-intolerant ‘Sour pummelo’ (Citrus grandis) and Mn-tolerant ‘Xuegan’ (Citrus sinensis) seedlings were irrigated for 17 weeks with 2 (control) or 600μM (Mn-toxicity or −excess) MnSO4. C. sinensis had higher Mn-tolerance than C. grandis, as indicated by the higher photosynthesis rates in Mn-excess C. sinensis leaves. Under Mn-toxicity, Mn levels were similar between C. sinensis and C. ...
- DOI:
- 10.1016/j.jplph.2017.08.011
- https://doi.org/10.1016/j.jplph.2017.08.011
- Author:
- Asha Bharti; Kulandaivelu Velmourougane; Radha Prasanna
- Source:
- Journal of applied phycology 2017 v.29 no.6 pp. 2729-2744
- ISSN:
- 0921-8971
- Subject:
- roots, etc ; Bacillariophyceae; Cyanobacteria; Protozoa; amino acid metabolism; autotrophs; bacteria; biochemical pathways; biofilm; biogeochemical cycles; bioinformatics; bioremediation; cell communication; disease control; fungi; heterotrophs; medical sciences; metabolites; metagenomics; microalgae; microbial communities; soil structure; wastewater treatment; water flow; Show all 24 Subjects
- Abstract:
- ... Phototrophic biofilms are complex conglomerations of light-driven microorganisms as autotrophs with heterotrophs embedded in a mucilaginous matrix comprising EPS (extracellular polymeric substances), attached to a solid surface. EPS provide structural and functional integrity and is essential for the physico-chemical and biological properties of the biofilms. These biofilms thrive in simple to ext ...
- DOI:
- 10.1007/s10811-017-1172-9
- https://doi.org/10.1007/s10811-017-1172-9
- Author:
- L. S. Wang; W. L. Li; X. W. Qi; L. Ma; W. L. Wu
- Source:
- Russian journal of plant physiology 2017 v.64 no.3 pp. 349-360
- ISSN:
- 1021-4437
- Subject:
- roots, etc ; Limonium; amino acid metabolism; biosynthesis; cytoskeleton; energy; gels; gene expression regulation; halophytes; homeostasis; leaves; lipids; protein synthesis; proteins; proteomics; salinity; salt stress; secondary metabolites; sodium chloride; superoxide dismutase; two-dimensional gel electrophoresis; vitamins; Show all 22 Subjects
- Abstract:
- ... Medicinal halophyte Limonium bicolor (Bag.) Kuntze was treated with 200 mM NaCl, the physiological parameters including fresh weight, dry weight, salt gland number, MDA levels and root activity were investigated, comparative proteomic analyses of leaf and root were carried out using 2D-PAGE combined with MALDI-TOF/TOF-MS. The results showed that L. bicolor performed a positive effect on its growth ...
- DOI:
- 10.1134/S1021443717030190
- https://doi.org/10.1134/S1021443717030190
- Author:
- Hou Dandi; Wang Kai; Liu Ting; Wang Haixin; Lin Zhi; Qian Jie; Lu Lingli; Tian Shengke
- Source:
- Environmental Science & Technology 2017 v.51 no.10 pp. 5675-5684
- ISSN:
- 1520-5851
- Subject:
- roots, etc ; Nocardioidaceae; Sedum; Streptomyces; amino acid metabolism; bacterial communities; bioavailability; cadmium; copper; ecotypes; heavy metals; hyperaccumulators; lead; physiological transport; phytoremediation; planting; polluted soils; rhizosphere; root systems; soil pH; zinc; Show all 21 Subjects
- Abstract:
- ... Understanding the strategies that the roots of hyperaccumulating plants use to extract heavy metals from soils is important for optimizing phytoremediation. The rhizosphere characteristics of Sedum alfredii, a hyperaccumulator, were investigated 6 months after it had been planted in weathered field soils contaminated with 5.8 μg of Cd g–¹, 1985.1 μg of Zn g–¹, 667.5 μg of Pb g–¹, and 698.8 μg of C ...
- DOI:
- 10.1021/acs.est.6b06531
- https://doi.org/10.1021/acs.est.6b06531
- Author:
- Pidatala Venkataramana R.; Li Kefeng; Sarkar Dibyendu; Ramakrishna Wusirika; Datta Rupali
- Source:
- Environmental Science & Technology 2016 v.50 no.5 pp. 2530-2537
- ISSN:
- 1520-5851
- Subject:
- roots, etc ; Chrysopogon zizanioides; amino acid metabolism; betaine; biochemical pathways; biomass; enzymes; grasses; hydroponics; lead; metabolites; metabolomics; organic acids and salts; osmotolerance; phytochelatins; phytoremediation; pollutants; polyols; shoots; stress response; sugars; tissues; Show all 22 Subjects
- Abstract:
- ... Lead (Pb) is a major urban pollutant, due to deteriorating lead-based paint in houses built before 1978. Phytoremediation is an inexpensive and effective technique for remediation of Pb-contaminated homes. Vetiver (Chrysopogon zizanioides), a noninvasive, fast-growing grass with high biomass, can tolerate and accumulate large quantities of Pb in its tissues. Lead is known to induce phytochelatins ...
- DOI:
- 10.1021/acs.est.5b04725
- https://doi.org/10.1021/acs.est.5b04725
- Author:
- Huiling Qiu; Isabelle Nadaud; Gérard Ledoigt; Agnès Piquet-Pissaloux; Gérard Branlard
- Source:
- Journal of proteomics 2016 v.143 pp. 83-92
- ISSN:
- 1874-3919
- Subject:
- roots, etc ; enzymes; cations; wheat; proteome; proline; cell division; dry matter accumulation; Triticum aestivum; genotype; grain yield; glycolysis; photosynthesis; gene expression regulation; amino acid metabolism; plant growth; arginine; nutrient deficiencies; adenosine triphosphate; straw; proteomics; proteins; magnesium; protein degradation; heading; seed development; Show all 26 Subjects
- Abstract:
- ... Magnesium (Mg), an indispensable mineral for plant growth, is concentrated in the peripheral layers (PLs) of the mature grain of wheat. The supply of Mg was interrupted from plant heading to maturity and a proteomic approach was used to investigate the PLs at three stages of development. Two genotypes with contrasting concentrations of Mg in the grain were studied: Apache (low Mg) and MgHL (high M ...
- DOI:
- 10.1016/j.jprot.2016.03.029
- https://doi.org/10.1016/j.jprot.2016.03.029
- Author:
- Ghazala Mustafa; Katsumi Sakata; Setsuko Komatsu
- Source:
- Journal of proteomics 2016 v.148 pp. 113-125
- ISSN:
- 1874-3919
- Subject:
- roots, etc ; Glycine max; amino acid metabolism; amino acids; cell division; enzyme activity; floods; gene expression; hypocotyls; messenger RNA; nanosilver; protein synthesis; protein-protein interactions; proteomics; ribosomal proteins; soy protein; soybeans; waxes; Show all 18 Subjects
- Abstract:
- ... Silver nanoparticles (Ag-NPs) are excessively used as antibacterial agents; however, environmental interaction specifically with the plants remain uncertain. To study the size-dependent effects of Ag-NPs on soybean under flooding, a proteomic technique was used. Morphological analysis revealed that treatment with Ag-NPs of 15nm promoted soybean growth under flooding compared to 2 and 50–80nm. A to ...
- DOI:
- 10.1016/j.jprot.2016.07.027
- https://doi.org/10.1016/j.jprot.2016.07.027
- Author:
- Xining Jin; Weihua Li; Desheng Hu; Xia Shi; Xiaoxiang Zhang; Fangfang Zhang; Zhiyuan Fu; Dong Ding; Zonghua Liu; Jihua Tang
- Source:
- Plant molecular biology reporter 2015 v.33 no.3 pp. 490-504
- ISSN:
- 0735-9640
- Subject:
- roots, etc ; Zea mays; amino acid metabolism; carbon; chlorophyll; corn; glutamate-ammonia ligase; hybrids; inbred lines; leaves; mass spectrometry; nitrates; nitrogen; nutrient deficiencies; nutrient use efficiency; photosynthesis; protein synthesis; proteins; proteomics; seedling growth; seedlings; starch; Show all 22 Subjects
- Abstract:
- ... The influence of nitrogen (N) deficiency on tolerance mechanisms in seedlings of two maize hybrids (Xu178 × Huang-C and Xu178 × Zong3) and their parental inbred lines (Xu178, Huang-C and Zong3), which show different nitrogen use efficiency (NUE), was investigated using physiological measurements combined with global proteomics profiling. The root fresh weight and chlorophyll a/b ratio were reduced ...
- DOI:
- 10.1007/s11105-014-0762-9
- https://doi.org/10.1007/s11105-014-0762-9
- Author:
- Chun Sui; Meng Chen; Jiesen Xu; Jianhe Wei; Yue Jin; Yanhong Xu; Jing Sun; Ke Gao; Chengmin Yang; Zheng Zhang; Shilin Chen; Hongmei Luo
- Source:
- Physiologia plantarum 2015 v.153 no.2 pp. 230-242
- ISSN:
- 0031-9317
- Subject:
- roots, etc ; Bupleurum; Oriental traditional medicine; amino acid metabolism; biosynthesis; carbohydrate metabolism; data collection; databases; energy metabolism; expressed sequence tags; flavonoids; lignans; lipid metabolism; reverse transcriptase polymerase chain reaction; secondary metabolites; terpenoids; transcription factors; transcriptome; unigenes; Show all 19 Subjects
- Abstract:
- ... Radix bupleuri, roots of Bupleurum species, is a widely used traditional Chinese medicine. Here, we compared the root transcriptomes of both Bupleurum chinense DC. and Bupleurum scorzonerifolium Willd. A total of 313 483 and 342 263 high quality expressed sequence tags were obtained, respectively. In addition, 17 117 (59.2%) and 19 416 (62.8%) unigenes for B. chinense and B. scorzonerifolium had h ...
- DOI:
- 10.1111/ppl.12254
- https://doi.org/10.1111/ppl.12254
- Author:
- Zhu Wei; Hu Jin; Wang Xin; Tian Jingkui; Komatsu Setsuko
- Source:
- Journal of Proteome Research 2015 v.14 no.6 pp. 2669-2685
- ISSN:
- 1535-3907
- Subject:
- roots, etc ; Mahonia; amino acid metabolism; berberine; biosynthesis; calreticulin; fractionation; glutathione; human diseases; leaves; medicinal plants; methionine adenosyltransferase; pentoses; photosynthesis; polyethylene glycol; protein composition; protein synthesis; proteome; proteomics; stems; Show all 20 Subjects
- Abstract:
- ... Mahonia is an important medicinal plant used for the treatment of human diseases. To explore the molecular mechanisms underlying the different pharmacological functions of Mahonia, organ-specific proteomics was performed. Protein profiles of leaves, stems, and roots from 2-year-old Mahonia plants were determined using gel-free/label-free proteomic technique, and totals of 304, 314, and 182 protein ...
- DOI:
- 10.1021/acs.jproteome.5b00208
- https://doi.org/10.1021/acs.jproteome.5b00208
- Author:
- Farzad Banaei-Asl; Ali Bandehagh; Ebrahim Dorani Uliaei; Davoud Farajzadeh; Katsumi Sakata; Ghazala Mustafa; Setsuko Komatsu
- Source:
- Journal of proteomics 2015 v.124 pp. 88-111
- ISSN:
- 1874-3919
- Subject:
- roots, etc ; Brassica napus; Pseudomonas fluorescens; amino acid metabolism; bacteria; canola; cell division; cluster analysis; cultivars; energy metabolism; histones; malate dehydrogenase; malate synthase; plant growth; proteomics; salt stress; salt tolerance; tricarboxylic acid cycle; Show all 18 Subjects
- Abstract:
- ... Plant-growth promoting bacteria can ameliorate the negative effects of salt stress on canola. To better understand the role of bacteria in canola under salt stress, salt-sensitive (Sarigol) and salt-tolerant (Hyola308) cultivars were inoculated with Pseudomonas fluorescens and protein profiles of roots were compared. Bacterial inoculation increased the dry weight and length of canola roots under s ...
- DOI:
- 10.1016/j.jprot.2015.04.009
- https://doi.org/10.1016/j.jprot.2015.04.009
- Author:
- Manish L. Raorane; Isaiah M. Pabuayon; Adithi R. Varadarajan; Sumanth Kumar Mutte; Arvind Kumar; Achim Treumann; Ajay Kohli
- Source:
- Molecular breeding 2015 v.35 no.6 pp. 139
- ISSN:
- 1380-3743
- Subject:
- roots, etc ; Oryza sativa; abiotic stress; amino acid metabolism; drought; drought tolerance; energy; gene expression regulation; genes; genetic background; grain yield; inflorescences; leaves; metabolites; photosynthesis; plant response; protein synthesis; proteins; proteome; proteomics; quantitative trait loci; rice; starch; sugars; tissues; Show all 25 Subjects
- Abstract:
- ... Smallholder rice cultivation productivity is directly related to alleviating hunger and poverty. Biotic and abiotic stresses increasingly subvert the process, and drought is the most common stress. A mechanistic understanding of plant response to drought could lead to the use of gene-based markers to generate drought-tolerant rice. Such an understanding is challenging due to the complex interplay ...
- DOI:
- 10.1007/s11032-015-0321-6
- https://doi.org/10.1007/s11032-015-0321-6
- Author:
- Jinyoung Yang; Richard C. Sicher; Moon S. Kim; Vangimalla R. Reddy
- Source:
- International Journal of Plant Biology 2014 v.5 no.1 pp. -
- ISSN:
- 2037-0164
- Subject:
- roots, etc ; alanine; aspartic acid; carbon dioxide; carbon dioxide enrichment; corn; drought; drought tolerance; genotype; hybrids; leaf water potential; methionine; photosynthesis; seedlings; shoots; soil water; soil water content; sowing; stomatal conductance; stress tolerance; water stress; Show all 21 Subjects
- Abstract:
- ... Three maize genotypes were grown in controlled environment chambers with ambient (38 Pa) or elevated (70 Pa) carbon dioxide and water stress treatments were initiated 17 days after sowing. Shoot dry weight of the drought tolerant hybrid in both CO₂ treatments was 44 to 73% less than that of the intermediate and sensitive hybrids when seedlings were well watered. Decreased shoot and root dry weight ...
- DOI:
- 10.4081/pb.2014.5535
- https://doi.org/10.4081/pb.2014.5535
- Author:
- Da-Eun Kim; Swapan Kumar Roy; Abu Hena Mostafa Kamal; Kun Cho; Soo Jeong Kwon; Seong-Woo Cho; Chul-Soo Park; Jong-Soon Choi; Setsuko Komatsu; Moon-Soon Lee; Sun-Hee Woo
- Source:
- Molecular biology reports 2014 v.41 no.8 pp. 5359-5366
- ISSN:
- 0301-4851
- Subject:
- roots, etc ; amino acid metabolism; amino acids; biosynthesis; centrifugation; eukaryotic cells; fatty acid metabolism; mass spectrometry; mitochondria; photorespiration; polyacrylamide gel electrophoresis; proteins; proteome; purines; pyrimidines; seedlings; translation (genetics); wheat; Show all 18 Subjects
- Abstract:
- ... Mitochondria are important organelles for cellular respiration within the eukaryotic cell and have many important functions including vitamin synthesis, amino acid metabolism and photorespiration. To investigate the mitochondrial proteome of the roots of wheat seedlings, a systematic and targeted analysis were carried out on the mitochondrial proteome from 15 day-old wheat seedling root material. ...
- DOI:
- 10.1007/s11033-014-3407-z
- PubMed:
- 24958017
- https://doi.org/10.1007/s11033-014-3407-z
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