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1. aRNApipe: a balanced, efficient and distributed pipeline for processing RNA-seq data in high-performance computing environments

Author:
Roberts, Brian S.,   et al.   ; Alonso, Arnald; Lasseigne, Brittany N.; Williams, Kelly; Nielsen, Josh; Ramaker, Ryne C.; Hardigan, Andrew A.; Johnston, Bobbi; Cooper, Sara J.; Marsal, Sara; Myers, Richard M.;     Show all 11 Authors
Source:
Bioinformatics 2017 v.33 no.11 pp. 1727-1729
ISSN:
1460-2059
Subject:
alternative splicing; bioinformatics; genome assembly; messenger RNA; quality control
Abstract:
... Summary: The wide range of RNA-seq applications and their high-computational needs require the development of pipelines orchestrating the entire workflow and optimizing usage of available computational resources. We present aRNApipe, a project-oriented pipeline for processing of RNA-seq data in high-performance cluster environments. aRNApipe is highly modular and can be easily migrated to any high ...
DOI:
10.1093/bioinformatics/btx023