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1. Spatiotemporal distribution of soil microfungi in “evolution canyon”, lower nahal oren, mount carmel, israel

Author:
, ISABELLA GRISHKAN; , EVIATAR NEVO; , SOLOMON P. WASSER; , TOMAS PAVLícEK
Source:
Israel journal of plant sciences 2000 v.48 no.4 pp. 297-308
ISSN:
0792-9978
Subject:
Zygomycota,   etc   ; Deuteromycotina; Fusarium; Penicillium; autumn; color; fungi; niches; phylogeny; soil; spatial variation; species diversity; temporal variation; Israel;     Show all 14 Subjects
Abstract:
... In the present study, quantitative and qualitative micromycete characteristics, suchas number of colony-forming units (CFU), species composition, species richness,diversity level, and dominant groups of species, were examined both in space andover time on the slopes and valley bottom of the Evolution Canyon (EC) micrositeat Lower Nahal Oren, Mt. Carmel, Israel. A total of 166 micromycete speciesbe ...
DOI:
10.1560/LAJV-KKNY-F0HD-59KG

2. A new species of Scutellospora with a coiled germination shield

Author:
Kramadibrata, K.; Walker, C.; Schwarzott, D.; Schussler, A.
Source:
Annals of botany 2000 v.86 no.1 pp. 21-27
ISSN:
0305-7364
Subject:
Zygomycota,   etc   ; vesicular arbuscular mycorrhizae; ribosomal RNA; mycorrhizal fungi; ribosomal DNA; phylogeny; genes; nucleotide sequences; spore germination; new species; fungal anatomy; chemotaxonomy; Indonesia;     Show all 13 Subjects
Abstract:
... During a survey of mycorrhizal fungi on the upper part of the Cisadane River, on the slopes of Mount Pangrango in Gede Pangrango National Park, West Java, an undescribed species of Scutellospora(Glomales) was discovered. This species has metallic golden to yellow to yellowish-brown spores that possess columnar protuberances. It is described and named Scutellospora projecturata sp. nov. The sequenc ...
DOI:
10.1006/anbo.2000.1146

3. Amoebidium parasiticum is a protozoan, not a Trichomycete

Author:
Benny, G.L.; O'Donnell, K.
Source:
Mycologia 2000 v.92 no.6 pp. 1133
ISSN:
0027-5514
Subject:
Zygomycota,   etc   ; life cycle (organisms); cell walls; chitin; nucleotide sequences; ribosomal RNA; polymerase chain reaction; phylogeny; Protozoa; taxonomic revisions; symbionts; mitochondria;     Show all 12 Subjects
Abstract:
... Classification of the Amoebidiales (Trichomycetes, Zygomycota) within the Fungi is problematical because their cell walls apparently lack chitin and they produce amoeboid cells during their life cycle. A nearly full length fragment of the nuclear small subunit (SSU) rRNA of Amoebidium parasiticum was amplified by the polymerase chain reaction (PCR) and sequenced to examine its phylogenetic relatio ...
Handle:
10113/24701

4. Are Microsporidia really related to Fungi?: a reappraisal based on additional gene sequences from basal fungi

Author:
Tanabe, Yuuhiko; Watanabe, Makoto M.; Sugiyama, Junta
Source:
Mycological research 2002 v.106 pp. 1380-1391
ISSN:
0953-7562
Subject:
Zygomycota,   etc   ; Chytridiomycota; DNA-directed RNA polymerase; Microsporidia; amino acid deletion; amino acid sequences; eukaryotic cells; fungi; genes; mitochondria; nucleotide sequences; phylogeny;     Show all 12 Subjects
Abstract:
... Microsporidia are intracellular parasitic microbes, which were once thought to be among early diverging eukaryotes, mainly because they lack mitochondria. However, this evolutionary scheme has been challenged by protein-based molecular phylogenetic studies, which suggest a more recent origin of the Microsporidia which clustered Microsporidia with or within ‘true’ fungal lineages. However, most of ...
DOI:
10.1017/S095375620200686X

5. Assembling the Fungal Tree of Life: constructing the Structural and Biochemical Database

Author:
Celio, G.J.; Padamsee, M.; Dentinger, B.T.; Bauer, R.; McLaughlin, D.J.
Source:
Mycologia 2006 v.98 no.6 pp. 850-859
ISSN:
0027-5514
Subject:
Zygomycota,   etc   ; Ascomycota; phylogeny; hyphae; Basidiomycota; databases; fungi;     Show all 7 Subjects
DOI:
10.3852/mycologia.98.6.850
PubMed:
17486962

6. Dating divergences in the Fungal Tree of Life: review and new analyses

Author:
Taylor, J.W.
Source:
Mycologia 2006 v.98 no.6 pp. 838-849
ISSN:
0027-5514
Subject:
Zygomycota,   etc   ; Ascomycota; Basidiomycota; fungi; phylogeny; fossils;     Show all 6 Subjects
DOI:
10.3852/mycologia.98.6.838
PubMed:
17486961

7. Phylogeny of the Zygomycota based on nuclear ribosomal sequence data

Author:
White, M.M.; O'Donnell, K.; Cafaro, M.J.; Tanabe, Y.; Sugiyama, J.
Source:
Mycologia 2006 v.98 no.6 pp. 872-884
ISSN:
0027-5514
Subject:
Zygomycota,   etc   ; phylogeny; ribosomal RNA; sequence analysis; molecular systematics; fungal anatomy; ultrastructure;     Show all 7 Subjects
DOI:
10.3852/mycologia.98.6.872
PubMed:
17486964

8. Bacterial and fungal community structure in Arctic tundra tussock and shrub soils

Author:
Wallenstein, Matthew David; McMahon, Shawna; Schimel, Joshua
Source:
FEMS microbiology ecology 2007 v.59 no.2 pp. 428-435
ISSN:
0168-6496
Subject:
Zygomycota,   etc   ; Acidobacteria; Proteobacteria; bacterial communities; climate change; community structure; fungal communities; fungi; genes; growing season; mineral soils; phylogeny; ribosomal RNA; shrubs; soil ecology; soil microorganisms; tundra; Alaska; Arctic region;     Show all 19 Subjects
Abstract:
... Fungal and bacterial community structure in tussock, intertussock and shrub organic and mineral soils at Toolik Lake, Alaska were evaluated. Community structure was examined by constructing clone libraries of partial 16S and 18S rRNA genes. The soil communities were sampled at the end of the growing season in August 2004 and just after the soils thawed in June 2005. The communities differed greatl ...
DOI:
10.1111/j.1574-6941.2006.00260.x
PubMed:
17313585

9. Influence of Ozone on Litter Quality and Its Subsequent Effects on the Initial Structure of Colonizing Microbial Communities

Author:
Aneja, Manish Kumar; Sharma, Shilpi; Fleischmann, Frank; Stich, Susanne; Heller, Werner; Bahnweg, Günther; Munch, Jean Charles; Schloter, Michael
Source:
Microbial ecology 2007 v.54 no.1 pp. 151-160
ISSN:
0095-3628
Subject:
Zygomycota,   etc   ; Actinobacteria; Ascomycota; Basidiomycota; Chytridiomycota; Proteobacteria; air pollution; bags; clones; community structure; forest decline; fungi; microbial communities; mixed forests; ozone; phylogeny; ribosomal RNA; trees; Europe; North America;     Show all 20 Subjects
Abstract:
... Ozone is considered as the main factor in air pollution related to a decline of forest in North America and Europe. In the present study, the effect of changed litter quality, due to ozone stress to trees, on the microbial communities colonizing the subsequent litter was investigated. Litter bag technique using beech and spruce litter from ozone-stressed and control trees, was combined with 16S an ...
DOI:
10.1007/s00248-006-9183-0
PubMed:
17364248

10. Eukaryotic communities associated with the decomposition of rice straw compost in a Japanese rice paddy field estimated by DGGE analysis

Author:
Hatamoto, Masashi; Tanahashi, Takanori; Murase, Jun; Matsuya, Kazuo; Hayashi, Motoki; Kimura, Makoto; Asakawa, Susumu
Source:
Biology and fertility of soils 2008 v.44 no.3 pp. 527-532
ISSN:
0178-2762
Subject:
Zygomycota,   etc   ; Ascomycota; Chytridiomycota; Ciliophora; composts; denaturing gradient gel electrophoresis; drainage; flooded conditions; fungi; paddies; paddy soils; phylogeny; ribosomal DNA; rice; rice straw;     Show all 15 Subjects
Abstract:
... To estimate the succession and phylogenetic composition of the eukaryotic communities responsible for the decomposition of rice straw compost under flooded conditions during the cultivation period of paddy rice, denaturing gradient gel electrophoresis (DGGE) analysis targeting 18S rDNA followed by sequencing was conducted in a Japanese paddy field. The eukaryotic communities in rice straw compost ...
DOI:
10.1007/s00374-007-0239-1

11. Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components

Author:
López, Marcela Dávila; Alm Rosenblad, Magnus; Samuelsson, Tore
Source:
Nucleic acids research 2008 v.36 no.9 pp. 3001-3010
ISSN:
0305-1048
Subject:
Zygomycota,   etc   ; chemical elements; RNA; catalytic activity; covariance; Acanthamoeba castellanii; models; phylogeny; Trichinella spiralis; spliceosomes; Physarum polycephalum; Chytridiomycota; introns; fungi;     Show all 14 Subjects
Abstract:
... The RNA molecules of the spliceosome are critical for specificity and catalysis during splicing of eukaryotic pre-mRNA. In order to examine the evolution and phylogenetic distribution of these RNAs, we analyzed 149 eukaryotic genomes representing a broad range of phylogenetic groups. RNAs were predicted using high-sensitivity local alignment methods and profile HMMs in combination with covariance ...
DOI:
10.1093/nar/gkn142
PubMed:
18390578
PubMed Central:
PMC2396436

12. Increasing ecological inference from high throughput sequencing of fungi in the environment through a tagging approach

Author:
TAYLOR, D. LEE; BOOTH, MICHAEL G.; MCFARLAND, JACK W.; HERRIOTT, IAN C.; LENNON, NIALL J.; NUSBAUM, CHAD; MARR, THOMAS G.
Source:
Molecular ecology resources 2008 v.8 no.4 pp. 742-752
ISSN:
1755-098X
Subject:
Zygomycota,   etc   ; Ascomycota; Basidiomycota; Chytridiomycota; DNA; fungi; high-throughput nucleotide sequencing; internal transcribed spacers; phylogeny; restriction fragment length polymorphism; soil; space and time; statistics;     Show all 13 Subjects
Abstract:
... High throughput sequencing methods are widely used in analyses of microbial diversity, but are generally applied to small numbers of samples, which precludes characterization of patterns of microbial diversity across space and time. We have designed a primer‐tagging approach that allows pooling and subsequent sorting of numerous samples, which is directed to amplification of a region spanning the ...

13. Potentiality of the cox1 gene in the taxonomic resolution of soil fungi

Author:
Molitor, Claire; Inthavong, Beatrice; Sage, Lucile; Geremia, Roberto A.; Mouhamadou, Bello
Source:
FEMS microbiology letters 2010 v.302 no.1 pp. 76-84
ISSN:
0378-1097
Subject:
Zygomycota,   etc   ; soil fungi; Ascomycota; phylogeny; internal transcribed spacers; species diversity; introns; genetic markers;     Show all 8 Subjects
Abstract:
... We explored the potential of the cox1 gene in the species resolution of soil fungi and compared it with the nuclear internal transcribed spacer (ITS) and small subunit (SSU)-rDNA. Conserved primers allowing the amplification of the fungal cox1 gene were designed, and a total of 47 isolates of Zygomycota and Ascomycota were investigated. The analysis revealed a lack of introns in >90% of the isolat ...
DOI:
10.1111/j.1574-6968.2009.01839.x
PubMed:
19909345

14. Trypsin-like proteins of the fungi as possible markers of pathogenicity

Author:
Dubovenko, Aleksej G.; Belozersky, Mikhail A.; Oppert, Brenda; Lord, Jeffrey C.; Elpidina, Elena N.
Source:
Fungal biology 2010 v.114 no.2-3 pp. 151
ISSN:
1878-6146
Subject:
Zygomycota,   etc   ; Ascomycota; Basidiomycota; phylogeny; peptidases; trypsin; fungal proteins; active sites; substrate specificity; biomarkers; pathogenicity; animal pathogenic fungi; plant pathogenic fungi; expressed sequence tags; amino acid motifs; conserved sequences; databases;     Show all 17 Subjects
Abstract:
... Sequences of peptidases with conserved motifs around the active site residues that are characteristic of trypsins (similar to trypsin peptidases, STP) were obtained from publicly-available fungal genomes and related databases. Among the 75 fungal genomes, 29 species of parasitic Ascomycota contained genes encoding STP and their homologs. Searches of non-redundant protein sequences, patented protei ...
Handle:
10113/44842
DOI:
10.1016/j.funbio.2009.11.004

15. Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages

Author:
Tedersoo, Leho; May, Tom W.; Smith, Matthew E.
Source:
Mycorrhiza 2010 v.20 no.4 pp. 217-263
ISSN:
0940-6360
Subject:
Zygomycota,   etc   ; Agaricales; Boletales; Cantharellales; Dipterocarpaceae; Fabaceae; Helotiales; Pezizales; ancestry; ectomycorrhizae; fungal communities; fungi; habitats; hosts; humus; isotopes; lifestyle; nucleotide sequences; phylogeny; risk; surveys; temperate zones; South America; South East Asia;     Show all 24 Subjects
Abstract:
... The ectomycorrhizal (EcM) symbiosis involves a large number of plant and fungal taxa worldwide. During studies on EcM diversity, numerous misidentifications, and contradictory reports on EcM status have been published. This review aims to: (1) critically assess the current knowledge of the fungi involved in the EcM by integrating data from axenic synthesis trials, anatomical, molecular, and isotop ...
DOI:
10.1007/s00572-009-0274-x
PubMed:
20191371

16. Analysis of the phylogenetic relationships and evolution of the cell walls from yeasts and fungi

Author:
Ruiz-Herrera, José; Ortiz-Castellanos, Lucila
Source:
FEMS yeast research 2010 v.10 no.3 pp. 225-243
ISSN:
1567-1356
Subject:
Zygomycota,   etc   ; Ascomycota; Chromista; Chytridiomycota; Microsporidia; Plantae; cell growth; cell walls; chitin; chitin synthase; chitosan; genes; phylogeny; proteins; yeasts;     Show all 15 Subjects
Abstract:
... The fungal cell wall is a coherent structure formed by microfibrillar polysaccharides and amorphous material made of other polysaccharides and proteins. We performed a phylogenetic analysis of covalent proteins and enzymes that synthesize fungal wall polysaccharides to determine the possible evolution of the wall structure. It is suggested that the components that made up the archaic walls were st ...
DOI:
10.1111/j.1567-1364.2009.00589.x
PubMed:
19891730

17. Phylogeny and Biotransformation. Part 5*: Biotransformation of Isopinocampheol

Author:
Abraham, Wolf-Rainer
Source:
Zeitschrift für Naturforschung 2014 v.49 no.9-10 pp. 553-560
ISSN:
1865-7125
Subject:
Zygomycota,   etc   ; Basidiomycota; bacteria; biotransformation; enantiomers; fungi; monoterpenoids; oxidation; phylogeny; screening;     Show all 10 Subjects
Abstract:
... Biotransformation of isopinocampheol with 100 bacterial and fungal strains yielded 1-, 2-, 4-, 5-, 7-, 8 - and 9-hydroxy-isopinocampheol besides three rearranged monoterpenes, one of them bearing the novel isocarane skeleton. A pronounced enantioselectivity between (+)- and (-)-isopinocampheol was observed. The phylogenetic position of the individual strains could be seen in their ability to form ...
DOI:
10.1515/znc-1994-9-1004

18. Fungal Cytochrome P450 Monooxygenases: Their Distribution, Structure, Functions, Family Expansion, and Evolutionary Origin

Author:
Chen, Wanping; Lee, Mi-Kyung; Jefcoate, Colin; Kim, Sun-Chang; Chen, Fusheng; Yu, Jae-Hyuk
Source:
Genome biology and evolution 2014 v.6 no.7 pp. 1620-1634
Subject:
Zygomycota,   etc   ; Ascomycota; Basidiomycota; Chytridiomycota; animals; bacteria; cytochrome P-450; fungi; gene duplication; genome; horizontal gene transfer; metabolism; models; niches; phylogeny; plants (botany); sequence homology;     Show all 17 Subjects
Abstract:
... Cytochrome P450 (CYP) monooxygenase superfamily contributes a broad array of biological functions in living organisms. In fungi, CYPs play diverse and pivotal roles in versatile metabolism and fungal adaptation to specific ecological niches. In this report, CYPomes in the 47 genomes of fungi belong to the phyla Ascomycota, Basidiomycota, Chytridiomycota, and Zygomycota have been studied. The compa ...
DOI:
10.1093/gbe/evu132
PubMed:
24966179
PubMed Central:
PMC4122930

19. Rhizospheric fungal community structure of a Bt brinjal and a near isogenic variety

Author:
Singh, A.K.; Singh, M.; Dubey, S.K.
Source:
Journal of applied microbiology 2014 v.117 no.3 pp. 750-765
ISSN:
1364-5072
Subject:
Zygomycota,   etc   ; Bacillus thuringiensis; Basidiomycota; Sordariomycetes; clones; commercialization; community structure; crop losses; crop yield; eggplants; functional diversity; fungal communities; fungi; genes; genetic engineering; insect pests; internal transcribed spacers; phylogeny; population size; quantitative polymerase chain reaction; ribosomal RNA; soil; soil fertility; transgenic plants;     Show all 24 Subjects
Abstract:
... AIMS: The objective of this study was to investigate the influence of Cry1Ac gene expressing brinjal (VRBT‐8) on the rhizospheric fungal community structure. METHODS AND RESULTS: qPCR indicated variations in the fungal ITS rRNA copy numbers of non‐Bt (1·43–4·43) × 10⁹ g⁻¹dws and Bt (1·43–3·32) × 10⁹ g⁻¹dws plots. Phylogenetic analysis of ITS rRNA clones indicated fungal‐related group majority of b ...
DOI:
10.1111/jam.12549

20. Soil fungal diversity in three nature reserves of Jiuzhaigou County, Sichuan Province, China

Author:
Zhou, You; He, Shuting; Gong, Guoshu; Zhang, Shirong; Chang, Xiaoli; Liu, Na; Sun, Xiaofang; Qi, Xiaobo; Ye, Kunhao; Wang, Yiyu
Source:
Annals of microbiology 2014 v.64 no.3 pp. 1275-1290
ISSN:
1590-4261
Subject:
Zygomycota,   etc   ; Aspergillus; Bipolaris maydis; Curvularia lunata; Humicola; Penicillium; Thanatephorus cucumeris; Trichoderma; agar; basins; conservation areas; internal transcribed spacers; mycelium; operon; pathogens; phylogeny; ribosomal DNA; soil; soil fungi; soil sampling; species diversity; transcription (genetics); China;     Show all 23 Subjects
Abstract:
... Jiuzhaigou County is located at the southern transition zone of Sichuan Basin and the Qinghai–Tibet Plateau and is the site of three famous nature reserves, namely, the Jiuzhaigou Nature Reserve (JZNR), Baihe Nature Reserve (BHNR) and Wujiao Nature Reserve (WJNR). The soil fungal diversity in this region has not yet been investigated. In this study, we collected 25 soil samples from these three na ...
DOI:
10.1007/s13213-013-0772-0