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1. ABA‐dependent inhibition of the ubiquitin proteasome system during germination at high temperature in Arabidopsis

Author:
Chiu, Rex Shun; Pan, Shiyue; Zhao, Rongmin; Gazzarrini, Sonia
Source:
The plant journal 2016 v.88 no.5 pp. 749-761
ISSN:
0960-7412
Subject:
transcriptome,   etc   ; Arabidopsis thaliana; abscisic acid; biosynthesis; dormancy; environmental factors; fluridone; gels; growth retardation; imbibition; monitoring; mutants; proteasome endopeptidase complex; proteome; seed germination; temperature; transcription (genetics); transcription factors; ubiquitin; ubiquitination;     Show all 20 Subjects
Abstract:
... During germination, endogenous and environmental factors trigger changes in the transcriptome, translatome and proteome to break dormancy. In Arabidopsis thaliana, the ubiquitin proteasome system (UPS) degrades proteins that promote dormancy to allow germination. While research on the UPS has focused on the identification of proteasomal substrates, little information is known about the regulation ...
DOI:
10.1111/tpj.13293

2. ABC transporters in the liver fluke Opisthorchis felineus

Author:
Mordvinov, Viatcheslav A.; Ershov, Nikita I.; Pirozhkova, Darya S.; Pakharukov, Yuri V.; Pakharukova, Maria Y.
Source:
Molecular and biochemical parasitology 2017
ISSN:
0166-6851
Subject:
transcriptome,   etc   ; Opisthorchis; P-glycoproteins; adults; anthelmintics; excretory system; gene expression; gene induction; genes; genetic markers; liver flukes; messenger RNA; nucleotide sequences; opisthorchiasis; polymerase chain reaction; public health; sequence analysis; therapeutics; tissues; toxins; verapamil; xenobiotics; Eastern European region; Russia;     Show all 24 Subjects
Abstract:
... ATP-binding cassette transporters (ABC transporters) are essential components of normal cellular physiological machinery in all eukaryotic and prokaryotic species, including parasites. Some ABC transporters, e.g., P-glycoproteins, are involved in the efflux of toxins and xenobiotics from the cell. At present, nothing is known about ABC transporter genes in epidemiologically important liver flukes ...
DOI:
10.1016/j.molbiopara.2017.07.001

3. Aberrant brain microRNA target and miRISC gene expression in the anx/anx anorexia mouse model

Author:
Mercader, Josep M.; González, Juan R.; Lozano, Juan José; Bak, Mads; Kauppinen, Sakari; Sumoy, Lauro; Dierssen, Mara; Fernández-Aranda, Fernando; Visa, Joana; Gratacòs, Mònica; Estivill, Xavier
Source:
Gene 2012 v.497 no.2 pp. 181-190
ISSN:
0378-1119
Subject:
transcriptome,   etc   ; animal models; anorexia; cortex; gene expression; gene expression regulation; genes; homozygosity; hypothalamus; messenger RNA; mice; microRNA; mutants; mutation; phenotype; quantitative polymerase chain reaction;     Show all 16 Subjects
Abstract:
... The anorexia mouse model, anx/anx, carries a spontaneous mutation not yet identified and homozygous mutants are characterized by anorexia–cachexia, hyperactivity, and ataxia. In order to test if the microRNA function was altered in these mice, hypothalamus and cortex transcriptomes were evaluated and the data was analyzed taking into account the presence of microRNA target sites. Subsequent valida ...
DOI:
10.1016/j.gene.2012.01.057
PubMed:
22310387

4. A bibliometric analysis of oyster research from 1991 to 2014

Author:
Guo, Lin; Xu, Fei; Feng, Zhigang; Zhang, Guofan
Source:
Aquaculture international 2016 v.24 no.1 pp. 327-344
ISSN:
0967-6120
Subject:
transcriptome,   etc   ; Ostreid herpesvirus 1; Vibrio parahaemolyticus; acidification; aquaculture; bibliometric analysis; climate change; databases; ecosystem services; food safety; immunity; mortality; nutrition; oysters; pollution; proteomics; reproduction; shellfish; United States;     Show all 19 Subjects
Abstract:
... In this study, a bibliometric analysis was performed to evaluate the global scientific production on oyster research from the period of 1991 to 2014. This analysis was based on the Science Citation Index Expanded database. A total of 11,493 publications were identified, and two main aspects were analysed: (1) publication performance and (2) research emphases and trends. The result indicated the an ...
DOI:
10.1007/s10499-015-9928-1

5. A bioinformatics survey for conotoxin-like sequences in three turrid snail venom duct transcriptomes

Author:
Gonzales, David Thomas T.; Saloma, Cynthia P.
Source:
Toxicon 2014 v.92 pp. 66-74
ISSN:
0041-0101
Subject:
transcriptome,   etc   ; bioinformatics; conotoxins; cysteine; genes; habitats; oxygen; peptides; signal peptide; snails; surveys; toxins; transcriptomics;     Show all 13 Subjects
Abstract:
... The repertoire of venom peptides produced by Conoidean snails has shown to be useful for therapeutic and neuropharmacologic applications. Despite their dominance in terms of species number, the Family Turridae is the least studied among their other Conoidean counterparts. They provide a vast resource of pharmacological material only hindered by the inaccessibility of their deep water habitat for s ...
DOI:
10.1016/j.toxicon.2014.10.003

6. Abiotic stress induced miRNA-TF-gene regulatory network: A structural perspective

Author:
Sharma, Rinku; Upadhyay, Shashankaditya; Bhat, Basharat; Singh, Garima; Bhattacharya, Sudeepto; Singh, Ashutosh
Source:
Genomics 2019
ISSN:
0888-7543
Subject:
transcriptome,   etc   ; Arabidopsis; cold; cold stress; cultivars; databases; drought; flooded conditions; genes; meta-analysis; microRNA; salt stress; transcription (genetics); transcription factors;     Show all 14 Subjects
Abstract:
... MicroRNAs (miRNAs) and transcription factors (TFs) are the largest families of trans-acting gene regulatory species, which are pivotal players in a complex regulatory network. Recently, extensive research on miRNAs and TFs in agriculture has identified these trans-acting regulatory species, as an effective tool for engineering new crop cultivars to increase yield and quality as well tolerance to e ...
DOI:
10.1016/j.ygeno.2019.03.004

7. Abiotic stress research in crops using -omics approaches: drought stress and banana in the spotlight

Author:
Kissel, E.; Vanhove, A. C.; Garcia, S.; Panis, B.; Rouard, M.; Cenci, A.; Roux, N.; Zorrilla, J.; Swennen, R.; Carpentier, S. C.
Source:
Acta horticulturae 2016 no.1114 pp. 81-90
ISSN:
0567-7572
Subject:
transcriptome,   etc   ; Musa acuminata; Musa balbisiana; bananas; biodiversity; breeding programs; crops; drought tolerance; gene banks; gene pool; genes; genetic variation; genotype; hosts; humid tropics; metabolites; metabolome; multivariate analysis; phenotype; proteomics; sequence analysis; stress response; variance; water stress;     Show all 24 Subjects
Abstract:
... Evaluating crop biodiversity is a challenging task and needs to integrate knowledge from different levels. This overview paper offers ways to tackle this challenge, illustrated by the case for drought tolerance in banana. KU Leuven hosts the International Musa Germplasm Collection managed by Bioversity International for safe storage and distribution in order to secure the crop's genepool and encou ...
DOI:
10.17660/ActaHortic.2016.1114.11

8. A blow to the fly — Lucilia cuprina draft genome and transcriptome to support advances in biology and biotechnology

Author:
Anstead, Clare A.; Batterham, Philip; Korhonen, Pasi K.; Young, Neil D.; Hall, Ross S.; Bowles, Vernon M.; Richards, Stephen; Scott, Maxwell J.; Gasser, Robin B.
Source:
Biotechnology advances 2016 v.34 no.5 pp. 605-620
ISSN:
0734-9750
Subject:
transcriptome,   etc   ; Lucilia cuprina; animals; biochemistry; biotechnology; excretion; flystrike; genome; hosts; insect genetics; insect larvae; insecticide resistance; insects; molecular biology; parasitism; skin (animal);     Show all 16 Subjects
Abstract:
... The blow fly, Lucilia cuprina (Wiedemann, 1830) is a parasitic insect of major global economic importance. Maggots of this fly parasitize the skin of animal hosts, feed on excretions and tissues, and cause severe disease (flystrike or myiasis). Although there has been considerable research on L. cuprina over the years, little is understood about the molecular biology, biochemistry and genetics of ...
DOI:
10.1016/j.biotechadv.2016.02.009

9. Abscisic acid-induced modulation of metabolic and redox control pathways in Arabidopsis thaliana

Author:
Ghassemian, Majid; Lutes, Jason; Chang, Hur-Song; Lange, Iris; Chen, Wenqiong; Zhu, Tong; Wang, Xun; Lange, B. Markus
Source:
Phytochemistry 2008 v.69 no.17 pp. 2899-2911
ISSN:
0031-9422
Subject:
transcriptome,   etc   ; Arabidopsis thaliana; seedlings; redox reactions; biochemical pathways; gene expression regulation; transcription (genetics); metabolome; ascorbic acid; antioxidant activity; abscisic acid;     Show all 11 Subjects
Abstract:
... Abscisic acid (ABA) has been implicated as a mediator in plant responses to various environmental stresses. To evaluate the transcriptional and metabolic events downstream of ABA perception, Arabidopsis thaliana seedlings were analyzed by transcript and metabolite profiling, and results were integrated, using the recently developed BioPathAt tool, in the context of the biochemical pathways affecte ...
DOI:
10.1016/j.phytochem.2008.09.020
PubMed:
19007950

10. Abscisic acid modulates polyamine metabolism under water stress in Arabidopsis thaliana

Author:
Alcázar, Rubén; Cuevas, Juan C.; Patron, M.; Altabella, Teresa; Tiburcio, Antonio F.
Source:
Physiologia plantarum 2006 v.128 no.3 pp. 448-455
ISSN:
0031-9317
Subject:
transcriptome,   etc   ; Arabidopsis thaliana; abscisic acid; arginine decarboxylase; genes; mutants; reverse transcriptase polymerase chain reaction; signal transduction; spermidine; spermine; stress response; water stress;     Show all 12 Subjects
Abstract:
... Limited information is available concerning plant signal transduction pathways regulating polyamine (PA) metabolism in response to various abiotic stress conditions. To gain a new insight into this question, we have studied the possible role of abscisic acid (ABA) in the modulation of PA metabolism under water stress conditions in the model plant Arabidopsis thaliana. Transcriptome profiling of th ...
DOI:
10.1111/j.1399-3054.2006.00780.x

11. Abscisic acid regulated gene expression in bread wheat (Triticum aestivum L.)

Author:
Keskin, Birsen Cevher; Sarikaya, Aysegul Topal; Yuksel, Bayram; Memon, Abdul Razaque
Source:
Australian journal of crop science 2010 v.4 no.8 pp. 617-625
ISSN:
1835-2707
Subject:
transcriptome,   etc   ; Triticum aestivum; wheat; gene expression; gene expression regulation; abscisic acid; abiotic stress; stress tolerance; spatial variation; temporal variation; messenger RNA; complementary DNA; nucleotide sequences; genes; signal transduction; biochemical pathways; receptors; transcription (genetics); polymerase chain reaction; leaves;     Show all 20 Subjects

12. Abscisic acid stimulated ripening and gene expression in berry skins of the Cabernet Sauvignon grape

Author:
Koyama, Kazuya; Sadamatsu, Keiko; Goto-Yamamoto, Nami
Source:
Functional & integrative genomics 2010 v.10 no.3 pp. 367-381
ISSN:
1438-793X
Subject:
transcriptome,   etc   ; Vitis vinifera; abscisic acid; acylation; anthocyanins; auxins; cell walls; ethylene; flavonols; gene expression; gene expression regulation; grapes; phenolic compounds; photosynthesis; ripening; small fruits; stress response; structural genes; transcription factors; vacuoles; vines;     Show all 21 Subjects
Abstract:
... We investigated the effect of exogenous abscisic acid (ABA) application on the transcriptome as well as the phenolic profiles in the skins of Vitis vinifera cv. Cabernet Sauvignon grape berries grown on the vine and cultured in vitro. ABA application rapidly induced the accumulation of anthocyanin and flavonol. Correlatively, the structural genes in the phenylpropanoid and flavonoid pathways, thei ...
DOI:
10.1007/s10142-009-0145-8
PubMed:
19841954

13. Absence of Symbiotic Leghemoglobins Alters Bacteroid and Plant Cell Differentiation During Development of Lotus japonicus Root Nodules

Author:
Ott, Thomas; Sullivan, John; James, Euan K.; Flemetakis, Emmanouil; Gunther, Catrin; Gibon, Yves; Ronson, Clive; Udvardi, Michael
Source:
Molecular plant-microbe interactions 2009 v.22 no.7 pp. 800-808
ISSN:
0894-0282
Subject:
transcriptome,   etc   ; Lotus corniculatus var. japonicus; forage legumes; forage crops; hemoglobin; symbiosis; cell differentiation; nodulation; root nodules; Rhizobiaceae; oxygen; ultrastructure; messenger RNA; transcriptomics; gene expression; microbial genetics; gene expression regulation; cell respiration; nitrogen fixation; secondary metabolites; leghemoglobin;     Show all 21 Subjects
Abstract:
... During development of legume root nodules, rhizobia and their host plant cells undergo profound differentiation, which is underpinned by massive changes in gene expression in both symbiotic partners. Oxygen concentrations in infected and surrounding uninfected cells drop precipitously during nodule development. To assess what effects this has on plant and bacterial cell differentiation and gene ex ...
DOI:
10.1094/MPMI-22-7-0800
PubMed:
19522562

14. Absorption, Metabolism, and Effects at Transcriptome Level of a Standardized French Oak Wood Extract, Robuvit, in Healthy Volunteers: Pilot Study

Author:
Natella, Fausta; Leoni, Guido; Maldini, Mariateresa; Natarelli, Lucia; Comitato, Raffaella; Schonlau, Frank; Virgili, Fabio; Canali, Raffaella
Source:
Journal of agricultural and food chemistry 2014 v.62 no.2 pp. 443-453
ISSN:
1520-5118
Subject:
transcriptome,   etc   ; Quercus robur; antioxidant activity; bioavailability; blood serum; cell culture; cell cycle; ellagic acid; gene expression regulation; humans; ingestion; metabolism; metabolites; oak barrels; phenols; ribosomes; spliceosomes; volunteers; wines; wood;     Show all 20 Subjects
Abstract:
... The consumption of wine and spirits, traditionally aged in oak barrels, exposes humans to roburin ingestion. These molecules belong to a class of ellagitannins (ETs), and their only known source is oak wood. Very little is currently known about roburin bioavailability and biological activity. We reported for the first time human absorption of roburins from a French oak wood (Quercus robur) water e ...
DOI:
10.1021/jf403493a
PubMed:
24354337

15. Abundance and diversity of resistance genes in the sugarcane transcriptome revealed by in silico analysis

Author:
Wanderley-Nogueira, A.C.; Soares-Cavalcanti, N.M.; Morais, D.A.L.; Belarmino, L.C.; Barbosa-Silva, A.; Benko-Iseppon, A.M.
Source:
Genetics and molecular research 2007 v.6 no.4 pp. 866-889
ISSN:
1676-5680
Subject:
transcriptome,   etc   ; Saccharum officinarum; sugarcane; gene expression regulation; plant genetics; disease resistance;     Show all 6 Subjects
PubMed:
18058709

16. A Candidate Gene Association Study for Growth Performance in an Improved Giant Freshwater Prawn (Macrobrachium rosenbergii) Culture Line

Author:
Jung, Hyungtaek; Lyons, Russell E.; Li, Yutao; Thanh, Nguyen Minh; Dinh, Hung; Hurwood, David A.; Salin, Krishna R.; Mather, Peter B.
Source:
Marine biotechnology 2014 v.16 no.2 pp. 161-180
ISSN:
1436-2228
Subject:
transcriptome,   etc   ; Macrobrachium rosenbergii; UTP-glucose-1-phosphate uridylyltransferase; genes; genetic variance; genotype; glycogen; growth performance; heat shock proteins; laboratory animals; loci; marker-assisted selection; phenotypic variation; phosphorylase; single nucleotide polymorphism; Vietnam;     Show all 16 Subjects
Abstract:
... A candidate gene approach using type I single nucleotide polymorphism (SNP) markers can provide an effective method for detecting genes and gene regions that underlie phenotypic variation in adaptively significant traits. In the absence of available genomic data resources, transcriptomes were recently generated in Macrobrachium rosenbergii to identify candidate genes and markers potentially associ ...
DOI:
10.1007/s10126-013-9555-7
PubMed:
24122143

17. A case report on the distended gut syndrome (DGS) in cultured larvae of Atlantic cod (Gadus morhua)

Author:
Kamisaka, Yuko; Jordal, Ann-Elise Olderbakk; Edvardsen, Rolf Brudvik; Kryvi, Harald; Otterlei, Erling; Rønnestad, Ivar
Source:
Aquaculture 2010 v.309 no.1-4 pp. 38-48
ISSN:
0044-8486
Subject:
transcriptome,   etc   ; Gadus morhua; cod (fish); fish culture; fish larvae; farmed fish; fish diseases; mortality; developmental stages; physical activity; appetite; disease outbreaks; histopathology; transcriptomics; liver; intestines; epithelial cells; hepatocytes; microarray technology; genes; gene expression regulation; oxidative stress; inflammation; Norway;     Show all 24 Subjects
Abstract:
... Production of juvenile Atlantic cod (Gadus morhua) in Norway has made progress during the past few years; however, high mortality in the larval stage is still one of the bottlenecks in commercial mass production. “Distended gut syndrome (DGS)” is often seen before and during phases of high mortality in the larval stage. The syndrome, which may affect various larval stages, is characterized by low ...
DOI:
10.1016/j.aquaculture.2010.09.006

18. Accelerating research on Spotted Wing Drosophila management using genomic technologies

Author:
Murphy, Katherine A.; West, Jessica D.; Kwok, Rosanna S.; Chiu, Joanna C.
Source:
Journal of pest science 2016 v.89 no.3 pp. 631-641
ISSN:
1612-4758
Subject:
transcriptome,   etc   ; Drosophila suzukii; RNA interference; agricultural management; demographic statistics; fruit crops; genetic relationships; genome; genomics; high-throughput nucleotide sequencing; insecticides; insects; invasive species; pest control;     Show all 14 Subjects
Abstract:
... Spotted Wing Drosophila (Drosophila suzukii) is an invasive species and a serious pest of berry and soft-skinned fruit crops. The close genetic relationship between D. suzukii and other well-studied Drosophila species has provided researchers with an already extensive genetic toolkit. The reference genome and transcriptome of this insect have been annotated and made publicly available since 2013, ...
DOI:
10.1007/s10340-016-0741-z

19. Accessory molecules for Toll-like receptors in Teleost fish. Identification of TLR4 interactor with leucine-rich repeats (TRIL)

Author:
Pietretti, Danilo; Spaink, Herman P.; Falco, Alberto; Forlenza, Maria; Wiegertjes, Geert F.
Source:
Molecular Immunology 2013 v.56 pp. 745-756
ISSN:
0161-5890
Subject:
transcriptome,   etc   ; Cyprinus carpio; Danio rerio; Toll-like receptor 3; Toll-like receptor 4; biosynthesis; blood platelets; brain; carp; data collection; endothelial cells; fibronectins; gene expression; genome; humans; mice; muscles; sequence analysis;     Show all 18 Subjects
Abstract:
... The biosynthesis and activation of Toll-like receptors (TLRs) requires accessory proteins. In mammals, a number of accessory proteins have been characterized, that can be classified based on their function as ligand-recognition and delivery cofactors, chaperones and trafficking proteins. We identified the homologs in teleost fish genomes of mammalian accessory molecules and show their expression i ...
DOI:
10.1016/j.molimm.2013.07.012

20. Acclimation-induced metabolic reprogramming contributes to rapid desiccation tolerance acquisition in Boea hygrometrica

Author:
Sun, Run-Ze; Lin, Chih-Ta; Zhang, Xiao-Fei; Duan, Li-Xin; Qi, Xiao-Quan; Gong, Yue-Hua; Deng, Xin
Source:
Environmental and experimental botany 2018 v.148 pp. 70-84
ISSN:
0098-8472
Subject:
transcriptome,   etc   ; abscisic acid; acclimation; alpha-tocopherol; biomarkers; biosynthesis; carbon; discriminant analysis; drought; drought tolerance; energy metabolism; enzymes; fatty acids; gas chromatography-mass spectrometry; glutaric acid; least squares; leaves; maltose; messenger RNA; metabolites; multigene family; rehydration; signal transduction; transcription (genetics); tryptophan; ubiquitination;     Show all 26 Subjects
Abstract:
... The acquisition of rapid desiccation tolerance for the resurrection plant Boea hygrometrica requires a cycle of drought acclimation. Here, a gas chromatography-mass spectrometry based global untargeted metabolite profiling analysis was conducted on leaves of B. hygrometrica during dehydration and rehydration. Metabolic profiles between non-acclimated and drought acclimated plants were clearly dist ...
DOI:
10.1016/j.envexpbot.2018.01.008

21. Acclimation to elevated CO2 is improved by low Rubisco and carbohydrate content, and enhanced Rubisco transcripts in the G132 barley mutant

Author:
Córdoba, Javier; Pérez, Pilar; Morcuende, Rosa; Molina-Cano, José-Luís; Martinez-Carrasco, Rafael
Source:
Environmental and experimental botany 2017 v.137 pp. 36-48
ISSN:
0098-8472
Subject:
transcriptome,   etc   ; acclimation; barley; carbohydrate content; carbon dioxide; carbon dioxide enrichment; gene expression; gene expression regulation; genes; genotype; growth chambers; jasmonic acid; leaf area; leaves; microarray technology; mutagenesis; mutants; nitrate reductase; nitrogen; photosynthesis; quantitative polymerase chain reaction; reverse transcriptase polymerase chain reaction; ribulose-bisphosphate carboxylase; transcription (genetics); transcription factors;     Show all 25 Subjects
Abstract:
... Variations induced by mutagenesis may identify targets for adapting to rising atmospheric CO2 concentrations. G132 is a barley mutant with strong decreases in photosynthesis, Rubisco and carbohydrate content, but increased Rubisco transcripts. We tested the hypothesis that G132 will record a greater stimulation of photosynthesis and dry mass gain than the wild-type (WT) in response to CO2 enrichme ...
DOI:
10.1016/j.envexpbot.2017.02.005

22. Acclimation to high CO₂ in maize is related to water status and dependent on leaf rank

Author:
PRINS, ANNEKE; MUKUBI, JOSEPHINE MUCHWESI; PELLNY, TILL K.; VERRIER, PAUL J.; BEYENE, GETU; LOPES, MARTA SILVA; EMAMI, KAVEH; TREUMANN, ACHIM; LELARGE-TROUVERIE, CAROLINE; NOCTOR, GRAHAM; KUNERT, KARL J.; KERCHEV, PAVEL; FOYER, CHRISTINE H.
Source:
Plant, cell and environment 2011 v.34 no.2 pp. 314-331
ISSN:
0140-7791
Subject:
transcriptome,   etc   ; Zea mays; acclimation; carbon dioxide; carbon dioxide enrichment; corn; leaves; photorespiration; proteome; transpiration;     Show all 10 Subjects
Abstract:
... The responses of C₃ plants to rising atmospheric CO₂ levels are considered to be largely dependent on effects exerted through altered photosynthesis. In contrast, the nature of the responses of C₄ plants to high CO₂ remains controversial because of the absence of CO₂-dependent effects on photosynthesis. In this study, the effects of atmospheric CO₂ availability on the transcriptome, proteome and m ...
DOI:
10.1111/j.1365-3040.2010.02245.x

23. Accumulation of Defence Response-related and Unique Expressed Sequence Tags during the Incompatible Interaction in the Oryza sativa-Magnaporthe oryzae Pathosystem

Author:
Dixit, Rekha; Bhargava, Ashutosh; Dalal, Vivek; Plaha, Prikshit; Singh, Nagendera K.; Sharma, Tilak R.
Source:
Phytopathologische Zeitschrift 2009 v.157 no.7-8 pp. 483-489
ISSN:
0931-1785
Subject:
transcriptome,   etc   ; Magnaporthe oryzae; Oryza sativa; RNA; cDNA libraries; clones; complementary DNA; disease resistance; expressed sequence tags; gene expression; host-pathogen relationships; rice; unigenes;     Show all 13 Subjects
Abstract:
... Resistance gene-dependent accumulation of expressed sequence tags (ESTs) was studied in a blast resistant, Oryza sativa ssp. indica cv. Tetep after challenge inoculation with an incompatible race of Magnaporthe oryzae. The nucleotide sequence of 287 randomly selected cDNA clones from the rice cDNA library constructed from the RNA isolated after challenge inoculation of the host was obtained and su ...
DOI:
10.1111/j.1439-0434.2008.01520.x

24. Acetohydroxyacid Synthase, a Novel Target for Improvement of L-Lysine Production by Corynebacterium glutamicum

Author:
Blombach, Bastian; Hans, Stephan; Bathe, Brigitte; Eikmanns, Bernhard J.
Source:
Applied and environmental microbiology 2009 v.75 no.2 pp. 419-427
ISSN:
0099-2240
Subject:
transcriptome,   etc   ; Corynebacterium glutamicum; acetolactate synthase; batch fermentation; biochemical pathways; gene deletion; genes; protein subunits;     Show all 8 Subjects
Abstract:
... The influence of acetohydroxy acid synthase (AHAS) on L-lysine production by Corynebacterium glutamicum was investigated. An AHAS with a deleted C-terminal domain in the regulatory subunit IlvN was engineered by truncating the ilvN gene. Compared to the wild-type AHAS, the newly constructed enzyme showed altered kinetic properties, i.e., (i) an about twofold-lower Km for the substrate pyruvate and ...
DOI:
10.1128/AEM.01844-08

25. Acetylcholinesterase 1 in populations of organophosphate-resistant North American strains of the cattle tick, Rhipicephalus microplus (Acari: Ixodidae)

Author:
Bendele, Kylie G.; Guerrero, Felix D.; Miller, Robert J.; Li, Andrew Y.; Barrero, Roberto A.; Moolhuijzen, Paula M.; Black, Michael; McCooke, John K.; Meyer, Jason; Hill, Catherine A.; Bellgard, Matthew I.
Source:
Parasitology research 2015 v.114 no.8 pp. 3027-3040
ISSN:
0932-0113
Subject:
transcriptome,   etc   ; Rhipicephalus microplus; acetylcholinesterase; alleles; amino acids; bacterial artificial chromosomes; cattle; cattle industry; coumaphos; databases; exons; larvae; mutation; pathogens; pesticide resistance; phenotype; resistance management; strains; ticks; transcriptomics; Mexico; Texas;     Show all 22 Subjects
Abstract:
... Rhipicephalus microplus, the cattle fever tick, is a global economic problem to the cattle industry due to direct infestation of cattle and pathogens transmitted during feeding. Cattle fever tick outbreaks continue to occur along the Mexico-US border even though the tick has been eradicated from the USA. The organophosphate (OP) coumaphos targets acetylcholinesterase (AChE) and is the approved aca ...
Handle:
10113/61882
DOI:
10.1007/s00436-015-4505-0

26. Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics

Author:
Varshney, Rajeev K.; Mohan, S. Murali; Gaur, Pooran M.; Gangarao, N.V.P.R.; Pandey, Manish K.; Bohra, Abhishek; Sawargaonkar, Shrikant L.; Chitikineni, Annapurna; Kimurto, Paul K.; Janila, Pasupuleti; Saxena, K.B.; Fikre, Asnake; Sharma, Mamta; Rathore, Abhishek; Pratap, Aditya; Tripathi, Shailesh; Datta, Subhojit; Chaturvedi, S.K.; Mallikarjuna, Nalini; Anuradha, G.; Babbar, Anita; Choudhary, Arbind K.; Mhase, M.B.; Bharadwaj, Ch.; Mannur, D.M.; Harer, P.N.; Guo, Baozhu; Liang, Xuanqiang; Nadarajan, N.; Gowda, C.L.L.
Source:
Biotechnology Advances 2013 v.31 pp. 1120-1134
ISSN:
0734-9750
Subject:
transcriptome,   etc   ; Ascochyta; Fusarium wilt; Nematoda; backcrossing; blight; chickpeas; crops; cultivars; developing countries; drought tolerance; food security; genetic background; genetic markers; genomics; genotyping; high-throughput nucleotide sequencing; hybrids; introgression; leaf rust; leaf spot; marker-assisted selection; nucleotide sequences; peanuts; pigeon peas; population; quantitative trait loci; recurrent selection; tropics;     Show all 29 Subjects
Abstract:
... Advances in next-generation sequencing and genotyping technologies have enabled generation of large-scale genomic resources such as molecular markers, transcript reads and BAC-end sequences (BESs) in chickpea, pigeonpea and groundnut, three major legume crops of the semi-arid tropics. Comprehensive transcriptome assemblies and genome sequences have either been developed or underway in these crops. ...
DOI:
10.1016/j.biotechadv.2013.01.001

27. Acidosis-Induced Changes in Proteome Patterns of the Prostate Cancer-Derived Tumor Cell Line AT-1

Author:
Ihling, Angelika; Ihling, Christian H.; Sinz, Andrea; Gekle, Michael
Source:
Journal of Proteome Research 2015 v.14 no.9 pp. 3996-4004
ISSN:
1535-3907
Subject:
transcriptome,   etc   ; NADP (coenzyme); acidosis; biosynthesis; cell lines; cholesterol; electron transfer; glucose transporters; glutathione transferase; hypoxia; inflammation; ischemia; lipid metabolism; metallothionein; metastasis; neoplasm cells; neoplasms; oxygen; pH; phenotype; prognosis; proteome; tricarboxylic acid cycle;     Show all 23 Subjects
Abstract:
... Under various pathological conditions, such as inflammation, ischemia and in solid tumors, physiological parameters (local oxygen tension or extracellular pH) show distinct tissue abnormalities (hypoxia and acidosis). For tumors, the prevailing microenvironment exerts a strong influence on the phenotype with respect to proliferation, invasion, and metastasis formation and therefore influences prog ...
DOI:
10.1021/acs.jproteome.5b00503

28. Acid Suspends the Circadian Clock in Hypoxia through Inhibition of mTOR

Author:
Walton, Zandra E.; Patel, Chirag H.; Brooks, Rebekah C.; Yu, Yongjun; Ibrahim-Hashim, Arig; Riddle, Malini; Porcu, Alessandra; Jiang, Tianying; Ecker, Brett L.; Tameire, Feven; Koumenis, Constantinos; Weeraratna, Ashani T.; Welsh, David K.; Gillies, Robert; Alwine, James C.; Zhang, Lin; Powell, Jonathan D.; Dang, Chi V.
Source:
Cell 2018 v.174 no.1 pp. 72-87.e32
ISSN:
0092-8674
Subject:
transcriptome,   etc   ; T-lymphocytes; acidification; biochemical pathways; cell lines; circadian clocks; circadian rhythm; genes; humans; hypoxia; lactic acid; lysosomes; mice; models; rapamycin; transcription (genetics);     Show all 16 Subjects
Abstract:
... Recent reports indicate that hypoxia influences the circadian clock through the transcriptional activities of hypoxia-inducible factors (HIFs) at clock genes. Unexpectedly, we uncover a profound disruption of the circadian clock and diurnal transcriptome when hypoxic cells are permitted to acidify to recapitulate the tumor microenvironment. Buffering against acidification or inhibiting lactic acid ...
DOI:
10.1016/j.cell.2018.05.009

29. A co-expression gene network associated with developmental regulation of apple fruit acidity

Author:
Bai, Yang; Dougherty, Laura; Cheng, Lailiang; Xu, Kenong
Source:
Molecular genetics and genomics 2015 v.290 no.4 pp. 1247-1263
ISSN:
1617-4615
Subject:
transcriptome,   etc   ; Malus domestica; acidity; apples; chromosomes; developmental stages; flavor; gene expression regulation; genes; genotype; harvesting; malates; malic acid; mutation; quantitative trait loci; stop codon; taste;     Show all 17 Subjects
Abstract:
... Apple fruit acidity, which affects the fruit’s overall taste and flavor to a large extent, is primarily determined by the concentration of malic acid. Previous studies demonstrated that the major QTL malic acid (Ma) on chromosome 16 is largely responsible for fruit acidity variations in apple. Recent advances suggested that a natural mutation that gives rise to a premature stop codon in one of the ...
DOI:
10.1007/s00438-014-0986-2

30. A collection of cytochrome P450 monooxygenase genes involved in modification and detoxification of herbicide atrazine in rice (Oryza sativa) plants

Author:
Rong Tan, Li; Chen Lu, Yi; Jing Zhang, Jing; Luo, Fang; Yang, Hong
Source:
Ecotoxicology and environmental safety 2015 v.119 pp. 25-34
ISSN:
0147-6513
Subject:
transcriptome,   etc   ; Oryza sativa; abiotic stress; acclimation; atrazine; cytochrome P-450; genes; high-throughput nucleotide sequencing; malathion; mass spectrometry; metabolites; microarray technology; piperonyl butoxide; quantitative polymerase chain reaction; rice; root growth; roots; shoots; toxic substances; toxicity; ultra-performance liquid chromatography;     Show all 21 Subjects
Abstract:
... Plant cytochrome P450 monooxygenases constitute one of the largest families of protein genes involved in plant growth, development and acclimation to biotic and abiotic stresses. However, whether these genes respond to organic toxic compounds and their biological functions for detoxifying toxic compounds such as herbicides in rice are poorly understood. The present study identified 201 genes encod ...
DOI:
10.1016/j.ecoenv.2015.04.035

31. A combination of gene expression ranking and co‐expression network analysis increases discovery rate in large‐scale mutant screens for novel Arabidopsis thaliana abiotic stress genes

Author:
Ransbotyn, Vanessa; Yeger‐Lotem, Esti; Basha, Omer; Acuna, Tania; Verduyn, Christoph; Gordon, Michal; Chalifa‐Caspi, Vered; Hannah, Matthew A.; Barak, Simon
Source:
Plant biotechnology journal 2015 v.13 no.4 pp. 501-513
ISSN:
1467-7644
Subject:
transcriptome,   etc   ; Arabidopsis thaliana; RNA; abiotic stress; crop production; gene expression; germination; mutants; phenotype; regulator genes; screening; transfer DNA;     Show all 12 Subjects
Abstract:
... As challenges to food security increase, the demand for lead genes for improving crop production is growing. However, genetic screens of plant mutants typically yield very low frequencies of desired phenotypes. Here, we present a powerful computational approach for selecting candidate genes for screening insertion mutants. We combined ranking of Arabidopsis thaliana regulatory genes according to t ...
DOI:
10.1111/pbi.12274

32. A combination of metabolome and transcriptome analyses reveals new targets of the Corynebacterium glutamicum nitrogen regulator AmtR

Author:
Buchinger, Sebastian; Strösser, Julia; Rehm, Nadine; Hänßler, Eva; Hans, Stephan; Bathe, Brigitte; Schomburg, Dietmar; Krämer, Reinhard; Burkovski, Andreas
Source:
Journal of biotechnology 2009 v.140 no.1-2 pp. 68-74
ISSN:
0168-1656
Subject:
transcriptome,   etc   ; Corynebacterium glutamicum; biosynthesis; biotechnology; carbon; excretion; gels; gene expression; genes; glutamate-ammonia ligase; glutamic acid; glycolysis; lysine; malic enzyme; messenger RNA; metabolites; metabolome; mutants; nitrogen; pentose phosphate cycle; tricarboxylic acid cycle;     Show all 21 Subjects
Abstract:
... The effects of a deletion of the amtR gene, encoding the master regulator of nitrogen control in Corynebacterium glutamicum, were investigated by metabolome and transcriptome analyses. Compared to the wild type, different metabolite patterns were observed in respect to glycolysis, pentose phosphate pathway, citric acid cycle, and most amino acid pools. Not all of these alterations could be attribu ...
DOI:
10.1016/j.jbiotec.2008.10.009

33. A comparative analysis of green fluorescent protein and β-glucuronidase protein-encoding genes as a reporter system for studying the temporal expression profiles of promoters

Author:
Kavita, P.; Burma, Pradeep Kumar
Source:
Journal of biosciences 2008 v.33 no.3 pp. 337-343
ISSN:
0250-5991
Subject:
transcriptome,   etc   ; Arabidopsis thaliana; Nicotiana tabacum; beta-glucuronidase; fluorescence; green fluorescent protein; messenger RNA; reporter genes;     Show all 8 Subjects
Abstract:
... The assessment of activity of promoters has been greatly facilitated by the use of reporter genes. However, the activity as assessed by reporter gene is a reflection of not only promoter strength, but also that of the stability of the mRNA and the protein encoded by the reporter gene. While a stable reporter gene product is an advantage in analysing activities of weak promoters, it becomes a major ...
DOI:
10.1007/s12038-008-0053-4

34. A comparative assessment of SNP and microsatellite markers for assigning parentage in a socially monogamous bird

Author:
Kaiser, Sara A.; Taylor, Scott A.; Chen, Nancy; Sillett, T. Scott; Bondra, Eliana R.; Webster, Michael S.
Source:
Molecular ecology resources 2017 v.17 no.2 pp. 183-193
ISSN:
1755-098X
Subject:
transcriptome,   etc   ; Setophaga caerulescens; genetic markers; genetic variation; genotyping; heterozygosity; loci; microsatellite repeats; monogamy; paternity; progeny; single nucleotide polymorphism; songbirds;     Show all 13 Subjects
Abstract:
... Single‐nucleotide polymorphisms (SNPs) are preferred over microsatellite markers in many evolutionary studies, but have only recently been applied to studies of parentage. Evaluations of SNPs and microsatellites for assigning parentage have mostly focused on special cases that require a relatively large number of heterozygous loci, such as species with low genetic diversity or with complex social ...
DOI:
10.1111/1755-0998.12589

35. A comparative genomic and transcriptomic analysis at the level of isolated root hair cells reveals new conserved root hair regulatory elements

Author:
Qiao, Zhenzhen; Pingault, Lise; Zogli, Prince; Langevin, Micaela; Rech, Niccole; Farmer, Andrew; Libault, Marc
Source:
Plant molecular biology 2017 v.94 no.6 pp. 641-655
ISSN:
0167-4412
Subject:
transcriptome,   etc   ; Arabidopsis thaliana; Glycine max; bioinformatics; data collection; evolution; genes; genomics; models; plant organs; promoter regions; root hairs; soybeans; transcription (genetics); transcriptomics;     Show all 15 Subjects
Abstract:
... KEY MESSAGE: A comparative transcriptomic and genomic analysis between Arabidopsis thaliana and Glycine max root hair genes reveals the evolution of the expression of plant genes after speciation and whole genome duplication. Our understanding of the conservation and divergence of the expression patterns of genes between plant species is limited by the quality of the genomic and transcriptomic res ...
DOI:
10.1007/s11103-017-0630-8

36. A comparative in silico linear B-cell epitope prediction and characterization for South American and African Trypanosoma vivax strains

Author:
Guedes, Rafael Lucas Muniz; Rodrigues, Carla Monadeli Filgueira; Coatnoan, Nicolas; Cosson, Alain; Cadioli, Fabiano Antonio; Garcia, Herakles Antonio; Gerber, Alexandra Lehmkuhl; Machado, Rosangela Zacarias; Minoprio, Paola Marcella Camargo; Teixeira, Marta Maria Geraldes; de Vasconcelos, Ana Tereza Ribeiro
Source:
Genomics 2019 v.111 no.3 pp. 407-417
ISSN:
0888-7543
Subject:
transcriptome,   etc   ; B-lymphocytes; Trypanosoma vivax; diagnostic techniques; disease severity; epitopes; genome; parasites; prediction; recombinant antigens; virulence; Brazil; Nigeria; Venezuela;     Show all 14 Subjects
Abstract:
... Trypanosoma vivax is a parasite widespread across Africa and South America. Immunological methods using recombinant antigens have been developed aiming at specific and sensitive detection of infections caused by T. vivax. Here, we sequenced for the first time the transcriptome of a virulent T. vivax strain (Lins), isolated from an outbreak of severe disease in South America (Brazil) and performed ...
DOI:
10.1016/j.ygeno.2018.02.017

37. A comparative morphological and transcriptomic study on autotetraploid Stevia rebaudiana (bertoni) and its diploid

Author:
Xiang, Zeng-xu; Tang, Xing-li; Liu, Wei-hu; Song, Chang-nian
Source:
Plant physiology and biochemistry 2019 v.143 pp. 154-164
ISSN:
0981-9428
Subject:
transcriptome,   etc   ; Stevia rebaudiana; autotetraploidy; biosynthesis; databases; diploidy; flavonoids; gene expression regulation; genes; glycosides; leaves; messenger RNA; morphogenesis; phenotypic plasticity; photosynthesis; plant growth; sequence analysis; steviol; stevioside; transcriptomics;     Show all 20 Subjects
Abstract:
... Stevia rebaudiana is an important medical plant for producing steviol glycosides (SGs) or stevioside. Autotetraploids (4x = 44) show an increasing level of morphology, physiology and tolerances comparing to diploids (2x = 22). However, little information regarded on the comparative transcriptome analysis between diploid and autotetraploid S. rebaudiana was found. In this study, synthetic autotetra ...
DOI:
10.1016/j.plaphy.2019.09.003

38. A comparative study of three akirin genes from big belly seahorse Hippocampus abdominalis: Molecular, transcriptional and functional characterization

Author:
Pavithiran, Amirthalingam; Bathige, S.D.N.K.; Kugapreethan, Roopasingam; Priyathilaka, Thanthrige Thiunuwan; Yang, Hyerim; Kim, Myoung-Jin; Lee, Jehee
Source:
Fish & shellfish immunology 2018 v.74 pp. 584-592
ISSN:
1050-4648
Subject:
transcriptome,   etc   ; Hippocampus abdominalis; Streptococcus iniae; carcinogenesis; cytoplasm; databases; embryogenesis; enzyme activity; fish; gene expression; genes; immunity; kidneys; liver; luciferase; muscle development; nuclear localization signals; nuclear proteins; pathogens; phylogeny; polyinosinic-polycytidylic acid; shellfish; signal transduction; tissues; transcription (genetics); transcription factor NF-kappa B;     Show all 26 Subjects
Abstract:
... Akirins, members of the NF-κB signaling pathway, are highly conserved nuclear proteins, which regulate gene expression in many physiological processes, including immunity, myogenesis, carcinogenesis, and embryogenesis. The akirin family in teleost fish consists of two to three genes. In the present study, three akirin genes from Hippocampus abdominalis were identified from a transcriptome database ...
DOI:
10.1016/j.fsi.2018.01.025

39. A Comparative Transcriptome Analysis Leads to New Insights into the Molecular Events Governing Root Formation in Mulberry Softwood Cuttings

Author:
Du, Wei; Ban, Yueyuan; Nie, Hao; Tang, Zhuang; Du, Xiaolong; Cheng, Jialing
Source:
Plant molecular biology reporter 2016 v.34 no.2 pp. 365-373
ISSN:
0735-9640
Subject:
transcriptome,   etc   ; Morus alba; cutting; developmental stages; gene expression; gene expression regulation; genes; high-throughput nucleotide sequencing; microsatellite repeats; molecular biology; mulberries; quantitative polymerase chain reaction; reverse transcriptase polymerase chain reaction; rooting; softwood; transcriptomics; woody plants;     Show all 17 Subjects
Abstract:
... Accelerated root formation is necessary for successful cuttage in a number of woody plants, such as mulberry (Morus alba L.). However, little information regarding the molecular mechanisms involved in this type of root formation is available. Here, we compared transcriptome changes during different root formation periods (0, 4, and 8 days) by conducting high-throughput sequencing to understand the ...
DOI:
10.1007/s11105-015-0927-1

40. A Comparative Transcriptome Analysis of Rhizobium etli Bacteroids: Specific Gene Expression During Symbiotic Nongrowth

Author:
Vercruysse, Maarten; Fauvart, Maarten; Beullens, Serge; Braeken, Kristien; Cloots, Lore; Engelen, Kristof; Marchal, Kathleen; Michiels, Jan
Source:
Molecular plant-microbe interactions 2011 v.24 no.12 pp. 1553-1561
ISSN:
0894-0282
Subject:
transcriptome,   etc   ; Phaseolus vulgaris; Rhizobium etli; amino acid metabolism; bacteria; gene expression; gene expression regulation; genes; host plants; soil; symbiosis; transcriptomics;     Show all 12 Subjects
Abstract:
... Rhizobium etli occurs either in a nitrogen-fixing symbiosis with its host plant, Phaseolus vulgaris, or free-living in the soil. During both conditions, the bacterium has been suggested to reside primarily in a nongrowing state. Using genome-wide transcriptome profiles, we here examine the molecular basis of the physiological adaptations of rhizobia to nongrowth inside and outside of the host. Com ...
DOI:
10.1094/MPMI-05-11-0140
PubMed:
21809980

41. A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages

Author:
Novaes, Jeniffer; Rangel, Luiz Thibério L.D.; Ferro, Milene; Abe, Ricardo Y.; Manha, Alessandra P.S.; de Mello, Joana C.M.; Varuzza, Leonardo; Durham, Alan M.; Madeira, Alda Maria B.N.; Gruber, Arthur
Source:
International journal for parasitology 2012 v.42 no.1 pp. 39-48
ISSN:
0020-7519
Subject:
transcriptome,   etc   ; Eimeria acervulina; Eimeria maxima; Eimeria tenella; Internet; branches; chickens; chromosomes; cluster analysis; coccidiosis; complementary DNA; databases; expressed sequence tags; genes; merozoites; oocysts; open reading frames; parasites; poultry diseases; sporozoites; trees;     Show all 21 Subjects
Abstract:
... Coccidiosis of the domestic fowl is a worldwide disease caused by seven species of protozoan parasites of the genus Eimeria. The genome of the model species, Eimeria tenella, presents a complexity of 55–60MB distributed in 14 chromosomes. Relatively few studies have been undertaken to unravel the complexity of the transcriptome of Eimeria parasites. We report here the generation of more than 45,00 ...
DOI:
10.1016/j.ijpara.2011.10.008
PubMed:
22142560

42. A comparative transcriptome and proteomics analysis reveals the positive effect of supplementary Ca2+ on soybean sprout yield and nutritional qualities

Author:
Wang, Xinkun; Yang, Runqiang; Zhou, Yulin; Gu, Zhenxin
Source:
Journal of proteomics 2016 v.143 pp. 161-172
ISSN:
1874-3919
Subject:
transcriptome,   etc   ; bean sprouts; biochemical pathways; calcium; gamma-aminobutyric acid; gene expression; gene expression regulation; genes; isoflavones; metabolism; nutritive value; phenolic compounds; phytic acid; proteins; proteomics; saponins; signal transduction; soybeans; transcription (genetics); transcriptomics; vitamins;     Show all 21 Subjects
Abstract:
... Effects of Ca²⁺ on yield and nutritional qualities of soybean sprout were investigated. Ca-treated sprouts had higher yield than water-treated ones. Metabolism of selected storage materials and bioactive substances in soybean sprouts was strengthened by Ca²⁺. The phytic acid and saponin content of Ca-treated soybean sprouts were lower than those of control. Supplemental Ca²⁺ increased content of g ...
DOI:
10.1016/j.jprot.2016.04.020

43. A comparative transcriptome approach for identification of molecular changes in Aphanomyces invadans infected Channa striatus

Author:
Kumaresan, Venkatesh; Pasupuleti, Mukesh; Arasu, Mariadhas Valan; Al-Dhabi, Naif Abdullah; Arshad, Aziz; Amin, S. M. Nurul; Yusoff, Fatimah Md.; Arockiaraj, Jesu
Source:
Molecular biology reports 2018 v.45 no.6 pp. 2511-2523
ISSN:
0301-4851
Subject:
transcriptome,   etc   ; Aphanomyces; Channa striata; RNA; epizootic diseases; fish; fungi; gene expression regulation; genes; immune response; immunoglobulins; pathogens; quantitative polymerase chain reaction; reverse transcriptase polymerase chain reaction; Asia;     Show all 15 Subjects
Abstract:
... Snakehead murrel, Channa striatus is an economically important aquatic species in Asia and are widely cultured and captured because of its nutritious and medicinal values. Their growth is predominantly affected by epizootic ulcerative syndrome (EUS) which is primarily caused by an oomycete fungus, Aphanomyces invadans. However, the molecular mechanism of immune response in murrel against this infe ...
DOI:
10.1007/s11033-018-4418-y

44. A comparative transcriptomic approach to understanding the formation of cork

Author:
Boher, Pau; Soler, Marçal; Sánchez, Anna; Hoede, Claire; Noirot, Céline; Paiva, JorgeAlmiro Pinto; Serra, Olga; Figueras, Mercè
Source:
Plant molecular biology 2018 v.96 no.1-2 pp. 103-118
ISSN:
0167-4412
Subject:
transcriptome,   etc   ; Quercus ilex; Quercus suber; abiotic stress; bark; cambium; chromatin; cork; gene expression regulation; metabolism; ontogeny; periderm; regulator genes; secondary phloem; suberin; transcriptomics; wood;     Show all 17 Subjects
Abstract:
... KEY MESSAGE: The transcriptome comparison of two oak species reveals possible candidates accounting for the exceptionally thick and pure cork oak phellem, such as those involved in secondary metabolism and phellogen activity. Cork oak, Quercus suber, differs from other Mediterranean oaks such as holm oak (Quercus ilex) by the thickness and organization of the external bark. While holm oak outer ba ...
DOI:
10.1007/s11103-017-0682-9

45. A comparative transcriptomic study of vitamin E and an algae-based antioxidant as antioxidative agents: Investigation of replacing vitamin E with the algae-based antioxidant in broiler diets

Author:
Xiao, R.; Power, R.F.; Mallonee, D.; Crowdus, C.; Brennan, K.M.; Ao, T.; Pierce, J.L.; Dawson, K.A.
Source:
Poultry science 2011 v.90 no.1 pp. 136-146
ISSN:
0032-5791
Subject:
transcriptome,   etc   ; broiler chickens; broiler feeding; dietary supplements; antioxidants; vitamin E; algae and seaweeds; optimal nutrition; antioxidant activity; physiological response; gene expression; nutrient uptake; nutrient utilization; transcriptomics; breast muscle; blood serum;     Show all 16 Subjects
Abstract:
... Previous study indicated that inclusion of an algae-based antioxidant as an antioxidative agent [EconomasE, Alltech, Nicholasville, KY; EcoE] significantly reduced the amount of vitamin E (VE) required in broiler diets without compromising performance and meat quality. To assess the mechanisms related to the VE-saving activity of EcoE, as well as other potential functions related to EcoE and VE su ...
DOI:
10.3382/ps.2010-01018

46. A comparative transcriptomic study on developmental gonads provides novel insights into sex change in the protandrous black porgy (Acanthopagrus schlegelii)

Author:
Zhang, Kai; Xu, Jin; Zhang, Zhiwei; Huang, Yu; Ruan, Zhiqiang; Chen, Shuyin; Zhu, Fei; You, Xinxin; Jia, Chaofeng; Meng, Qian; Gu, Ruobo; Lin, Xueqiang; Xu, Junmin; Xu, Pao; Zhang, Zhiyong; Shi, Qiong
Source:
Genomics 2019 v.111 no.3 pp. 277-283
ISSN:
0888-7543
Subject:
transcriptome,   etc   ; Acanthopagrus schlegelii schlegelii; adults; animal ovaries; breeding; females; gene expression regulation; genes; genome assembly; genomics; males; marine fish; protandry; sex determination; sex reversal; testes; transcriptomics; China;     Show all 18 Subjects
Abstract:
... Protandrous black porgy (Acanthopagrus schlegelii) is a popular and valuable commercial marine fish in China and East Asian countries. Controlling and managing its breeding has been an imperative step towards obtaining a sustainable supply of this fish in aquaculture production systems. Therefore, study on the molecular mechanisms of sex change in black porgy has both scientific and commercial imp ...
DOI:
10.1016/j.ygeno.2018.11.006

47. A comparison of single nucleotide polymorphism and microsatellite markers for analysis of parentage and kinship in a cooperatively breeding bird

Author:
Weinman, Lucia R.; Solomon, Joseph W.; Rubenstein, Dustin R.
Source:
Molecular ecology resources 2015 v.15 no.3 pp. 502-511
ISSN:
1755-098X
Subject:
transcriptome,   etc   ; Sturnidae; birds; breeding; fathers; genetic markers; genome; genotyping; kinship; loci; microsatellite repeats; nests; parentage; progeny; single nucleotide polymorphism;     Show all 15 Subjects
Abstract:
... The development of genetic markers has revolutionized molecular studies within and among populations. Although poly‐allelic microsatellites are the most commonly used genetic marker for within‐population studies of free‐living animals, biallelic single nucleotide polymorphisms, or SNPs, have also emerged as a viable option for use in nonmodel systems. We describe a robust method of SNP discovery f ...
DOI:
10.1111/1755-0998.12330

48. A comparison of the aging and apoptotic transcriptome of Saccharomyces cerevisiae

Author:
Laun, P.; Ramachandran, L.; Jarolim, S.; Herker, E.; Liang, P.; Wang, J.; Weinberger, M.; Burhans, D.T.; Suter, B.; Madeo, F.
Source:
FEMS yeast research 2005 v.5 no.12 pp. 1261-1272
ISSN:
1567-1356
Subject:
transcriptome,   etc   ; Saccharomyces cerevisiae; senescence; apoptosis; transcription (genetics); gene expression regulation; DNA damage; mitochondria; lipids; isoprenoids; cell walls; microarray technology;     Show all 12 Subjects
PubMed:
16168721

49. A comparison of the sexually dimorphic dexamethasone transcriptome in mouse cerebral cortical and hypothalamic embryonic neural stem cells

Author:
Frahm, Krystle A.; Waldman, Jacob K.; Luthra, Soumya; Rudine, Anthony C.; Monaghan-Nichols, A. Paula; Chandran, Uma R.; DeFranco, Donald B.
Source:
Molecular and cellular endocrinology 2018 v.471 pp. 42-50
ISSN:
0303-7207
Subject:
transcriptome,   etc   ; brain; data collection; dexamethasone; embryo (animal); females; gene expression; gene expression regulation; genes; glucocorticoids; males; mice; neural networks; sequence analysis; sexual dimorphism; stem cells; synthetic glucocorticoids;     Show all 17 Subjects
Abstract:
... Fetal exposure to synthetic glucocorticoids reprograms distinct neural circuits in the developing brain, often in a sex-specific manner, via mechanisms that remain poorly understood. To reveal whether such reprogramming is associated with select molecular signatures, we characterized the transcriptome of primary, embryonic mouse cerebral cortical and hypothalamic neural progenitor/stem cells deriv ...
DOI:
10.1016/j.mce.2017.05.026

50. A comparison of the Thlaspi caerulescens and Thlaspi arvense shoot transcriptomes

Author:
Hammond, John P.; Bowen, Helen C.; White, Philip J.; Mills, Victoria; Pyke, Kevin A.; Baker, Alan J.M.; Whiting, Steven N.; May, Sean T.; Broadley, Martin R.
Source:
New phytologist 2006 v.170 no.2 pp. 239-260
ISSN:
0028-646X
Subject:
transcriptome,   etc   ; Thlaspi caerulescens; hyperaccumulators; Thlaspi arvense; genome; transcription (genetics); gene expression regulation; plant genetics; Arabidopsis thaliana; nucleic acid hybridization; zinc; heavy metals;     Show all 12 Subjects
DOI:
10.1111/j.1469-8137.2006.01662.x
PubMed:
16608451