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- Author:
- D. Senalik, et al. ; L. Palmieri; S. L. Ellison; P. W. Simon; J. Brunet; Show all 5 Authors
- Source:
- Acta horticulturae 2019 v. no.1264 pp. 165-174
- ISSN:
- 0567-7572
- Subject:
- DNA; breeding sites; carrots; chromosomes; cultivars; genes; genetic markers; genetic variation; genotyping by sequencing; introgression; leaves; pollen; pollinators; population structure; seeds; single nucleotide polymorphism; United States
- Abstract:
- ... Wild and cultivated carrots easily hybridize and cultivar genes can infiltrate wild carrot populations when pollinators move pollen from cultivated to wild carrots or when cultivar seeds migrate into wild carrot populations. Cultivar genes may then spread within and among wild carrot populations, a process called introgression. Wild carrots are widespread in the USA, can be weedy and have been dec ...
- Handle:
- 10113/7069002
- DOI:
- 10.17660/ActaHortic.2019.1264.20
- https://doi.org/10.17660/ActaHortic.2019.1264.20
- Author:
- D. Senalik, et al. ; S. L. Ellison; P. W. Simon; Show all 3 Authors
- Source:
- Acta horticulturae 2019 v. no.1264 pp. 107-112
- ISSN:
- 0567-7572
- Subject:
- Daucus carota subsp. sativus; breeding programs; carotenes; carrots; chromoplasts; cultivars; epistasis; genes; genotyping; homozygosity; marker-assisted selection; phytoene synthase; pigmentation; plant breeding; single nucleotide polymorphism
- Abstract:
- ... Orange carrots (Daucus carota ssp. sativus) are an important source of provitamin A carotenoids, unlike their wild progenitor D. carota ssp. carota. Until recently the basis of orange pigmentation was thought to be controlled primarily by two genes, Y and Y2, however, the use of an association panel with high density SNP markers led to the discovery of an additional candidate carotenoid presence g ...
- DOI:
- 10.17660/ActaHortic.2019.1264.12
- https://doi.org/10.17660/ActaHortic.2019.1264.12
- Author:
- D. Senalik, et al. ; A. Macko-Podgorni; K. Stelmach; K. Kwolek; P. W. Simon; D. Grzebelus; Show all 6 Authors
- Source:
- Acta horticulturae 2019 v. no.1264 pp. 129-134
- ISSN:
- 0567-7572
- Subject:
- carrots; chromosome mapping; chromosomes; color; cultivars; domestication; fresh market; genome-wide association study; genomics; genotyping by sequencing; industry; models; open pollination; phenotype; quantitative trait loci; single nucleotide polymorphism
- Abstract:
- ... Carrot is a vegetable widely used for fresh market and processing. Diverse groups of carrot cultivars have been developed to meet consumer demands and industry needs. The major varietal groups of cultivated carrot are defined based on the root color and shape. However, little is known about the genetic basis of root shape determination. We used 307 plants representing 103 carrot open-pollinated cu ...
- DOI:
- 10.17660/ActaHortic.2019.1264.15
- https://doi.org/10.17660/ActaHortic.2019.1264.15
- Author:
- D. Senalik, et al. ; P. F. Cavagnaro; F. Bannoud; M. lorizzo; S. L. Ellison; P. W. Simon; Show all 6 Authors
- Source:
- Acta horticulturae 2019 v. no.1264 pp. 101-106
- ISSN:
- 0567-7572
- Subject:
- acylation; anthocyanins; anti-inflammatory activity; antioxidants; biosynthesis; breeding programs; carrots; chemical structure; dietary supplements; food colorants; germplasm; glycosylation; health promotion; new variety; phytonutrients; pigmentation; plant breeding; tissues; water solubility
- Abstract:
- ... Purple carrots represent an excellent dietary source of anthocyanins. The consumption of these water-soluble flavonoid pigments is associated with various health benefits, attributed mainly to their antioxidant and anti-inflammatory properties. Anthocyanin pigmentation varies broadly among organs and tissues of the carrot plant and among carrot genetic stocks. The chemical structure of anthocyanin ...
- DOI:
- 10.17660/ActaHortic.2019.1264.11
- https://doi.org/10.17660/ActaHortic.2019.1264.11
- Author:
- D. Senalik, et al. ; S. Ellison; M. Iorizzo; P. W. Simon; Show all 4 Authors
- Source:
- Acta horticulturae 2017 no.1153 pp. 93-100
- ISSN:
- 0567-7572
- Subject:
- Daucus carota; beta-carotene; biosynthesis; carrots; cataract; chromosome mapping; chromosomes; genes; genotyping by sequencing; health promotion; heart diseases; high performance liquid chromatography; humans; lutein; lycopene; macular degeneration; men; neoplasms; phenotype; plant breeders; risk; single nucleotide polymorphism; vision; vitamin A
- Abstract:
- ... Orange carrot (Daucus carota L.) is one of the richest sources of naturally occurring β-carotene while red and yellow carrot varieties contain large quantities of lycopene and lutein. The human body utilizes carotenoids, particularly β-carotene (provitamin A) as a precursor for the production of retinol, which is imperative for normal vision. Further, lycopene has been associated with a lowered ri ...
- Handle:
- 10113/5695280
- DOI:
- 10.17660/ActaHortic.2017.1153.14
- https://doi.org/10.17660/ActaHortic.2017.1153.14
- Author:
- D Senalik, et al. ; Shelby Ellison; Hamed Bostan; Philipp Simon; M. Iorizzo; Show all 5 Authors
- Source:
- GenesGenomesGenetics 2017 v.7 no.8 pp. 2665-2675
- ISSN:
- 2160-1836
- Subject:
- Arabidopsis; Daucus carota subsp. sativus; beta-carotene; carrots; chromosome mapping; corn; gene expression regulation; genes; genetic variation; loci; metabolism; photomorphogenesis; quantitative trait loci; roots; transcription factors; transcriptomics; vitamin A
- Abstract:
- ... Domesticated carrots, Daucus carota subsp. sativus, are the richest source of b-carotene in the US diet, which, when consumed, is converted into vitamin A, an essential component of eye health and immunity. The Y2 locus plays a significant role in beta-carotene accumulation in carrot roots, but a candidate gene has not been identified. To advance our understanding of this locus, the genetic basis ...
- Handle:
- 10113/5801834
- DOI:
- 10.1534/g3.117.043067
- PubMed:
- 28663343
- PubMed Central:
- PMC5555471
- https://doi.org/10.1534/g3.117.043067
- Author:
- D. Senalik, et al. ; M. lorizzo; M. Pottorff; H. Bostan; S. L. Ellison; P. F. Cavagnaro; D. M. Spooner; P. W. Simon; Show all 8 Authors
- Source:
- Acta horticulturae 2019 v. no.1264 pp. 75-90
- ISSN:
- 0567-7572
- Subject:
- carrots; chromosome mapping; databases; evolution; genetic variation; genomics; genotyping; microsatellite repeats; organelle genome; private enterprises; single nucleotide polymorphism; universities
- Abstract:
- ... In recent years, there has been an increase in efforts toward the development of genomic resources in carrot. The number of available sequences for carrot in public databases has also increased, which has enabled the design of SSR markers, COS markers and a large-scale SNP assay for genotyping. Additional molecular tools include the first high-throughput DArT array and the full sequence of organel ...
- DOI:
- 10.17660/ActaHortic.2019.1264.9
- https://doi.org/10.17660/ActaHortic.2019.1264.9
- Author:
- D. Senalik, et al. ; C. I. Arbizu; H. Ruess; M. Iorizzo; P. W. Simon; D. M. Spooner; K. Reitsma; Show all 7 Authors
- Source:
- Acta horticulturae 2017 no.1153 pp. 265-272
- ISSN:
- 0567-7572
- Subject:
- DNA; Daucus; USDA; carrots; domestication; genotyping by sequencing; germplasm; marine environment; monophyly; morphometry; single nucleotide polymorphism; transcriptome; Central Asia
- Abstract:
- ... We here summarize and integrate results from recent publications examining the species boundaries, phylogeny, and domestication in the genus Daucus, and outline our future research goals directed towards the goal of producing a taxonomic monograph of the genus. In one study, 94 nuclear orthologs were used to analyze phylogenetic structure in 92 accessions of 13 Daucus species, and an additional 15 ...
- Handle:
- 10113/5695305
- DOI:
- 10.17660/ActaHortic.2017.1153.39
- https://doi.org/10.17660/ActaHortic.2017.1153.39
- Author:
- D. Senalik, et al. ; M. Iorizzo; S. Ellison; A. Van Deynze; K. Stoffel; H. Ashrafi; M. Iovene; P. Cavagnaro; S. Cheng; P. Zheng; Z. Zheng; D. M. Spooner; P. W. Simon; Show all 13 Authors
- Source:
- Acta Horticulturae 2017 v. no.1153 pp. 61-68
- ISSN:
- 0567-7572
- Subject:
- carrots; chromosome mapping; databases; evolution; genetic variation; genomics; genotyping; microsatellite repeats; organelle genome; sequence analysis; single nucleotide polymorphism
- Abstract:
- ... In recent years there has been an effort towards the development of genomic resources in carrot. The number of available sequences for carrot in public databases has increased recently. This has allowed the design of SSRs markers, COS markers and a high-throughput SNP assay for genotyping. Additional molecular tools include the first high-throughput DArT array and the full sequence of organelle ge ...
- Handle:
- 10113/5678143
- DOI:
- 10.17660/ActaHortic.2017.1153.10
- https://doi.org/10.17660/ActaHortic.2017.1153.10
- Author:
- D. Senalik, et al. ; H. Zhu; B. H. McCown; E. L. Zeldin; J. Speers; J. Hyman; N. Bassil; K. Hummer; P. W. Simon; J. E. Zalapa; Show all 10 Authors
- Source:
- Theoretical and applied genetics 2012 v.124 no.1 pp. 87-96
- ISSN:
- 0040-5752
- Subject:
- Vaccinium macrocarpon; alleles; cranberries; cultivars; genetic markers; genetic variation; genotype; hybrids; loci; market development; microsatellite repeats; parentage; sequence analysis
- Abstract:
- ... The American cranberry (Vaccinium macrocarpon Ait.) is a major commercial fruit crop in North America, but limited genetic resources have been developed for the species. Furthermore, the paucity of codominant DNA markers has hampered the advance of genetic research in cranberry and the Ericaceae family in general. Therefore, we used Roche 454 sequencing technology to perform low-coverage whole gen ...
- Handle:
- 10113/54991
- DOI:
- 10.1007/s00122-011-1689-2
- PubMed:
- 21904845
- https://doi.org/10.1007/s00122-011-1689-2
- Author:
- D. Senalik, et al. ; M. Briard; V. Le Clerc; D. Grzebelus; P. W. Simon; Show all 5 Authors
- Source:
- Plant molecular biology reporter 2000 v.18 no.3 pp. 235-241
- ISSN:
- 0735-9640
- Subject:
- DNA; amplified fragment length polymorphism; carrots; genetic markers; radionuclides; silver
- Abstract:
- ... AFLP™ is one of the most frequently used techniques for identification of molecular markers. We have modified the procedures for genomic DNA extraction, AFLP product generation and silver staining in order to speed up analyses and screen large numbers of plant samples. Using this protocol, we were able to achieve an 82% reduction of costs without compromising the reliability and quality of data ga ...
- DOI:
- 10.1007/BF02823994
- https://doi.org/10.1007/BF02823994
12. Microcomputer Simulation of Expected Gains from Eight Methods of Intrapopulation Recurrent Selection
- Author:
- D. Senalik, et al. ; J. G. Coors; J. E. Staub; C. A. Rinehart; Show all 4 Authors
- Source:
- Agronomy journal 1989 v.81 no.2 pp. 317-320
- ISSN:
- 0002-1962
- Subject:
- genetic improvement; recurrent selection; genetic variation; microcomputers; computer techniques; computer software
- Abstract:
- ... An interactive microcomputer program was developed to provide plant breeders and graduate students in quantitative genetics the opportunity to devise selection strategies and review expected gains for eight intrapopulation selection methods. Selection methods include uniparental and biparental mass selection, three forms of half-sib selection, full-sib selection, and S₁ and S₂ selection. Users pro ...
- DOI:
- 10.2134/agronj1989.00021962008100020035x
- https://doi.org/10.2134/agronj1989.00021962008100020035x