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- Author:
- Hussein Abdel-Haleem, et al. ; James Y. Kim; Zinan Luo; Aaron Szczepanek; Show all 4 Authors
- Source:
- Smart agricultural technology 2023 v.3 pp. 100093
- ISSN:
- 2772-3755
- Subject:
- Camelina; automation; calibration; cameras; computers; cost effectiveness; electronics; genetic variation; genotype; humidity; irrigation; lidar; mobile telephones; phenotype; raspberries; soil water; temperature; water management; water stress
- Abstract:
- ... Integration of plant phenotyping and irrigation is particularly advantageous for identifying genetic variation associated with crop productivity. Collecting phenotypic data and water management under controlled or open environment can be expensive and laborious. This study aims to design a cost-effective solution for high-throughput phenotyping (HTP) and automated irrigation using open-source elec ...
- Handle:
- 10113/7835683
- DOI:
- 10.1016/j.atech.2022.100093
- https://doi.org/10.1016/j.atech.2022.100093
- Author:
- Hussein Abdel-Haleem, et al. ; Zinan Luo; Aaron Szczepanek; Show all 3 Authors
- Source:
- Industrial crops and products 2022 v.187 pp. 115379
- ISSN:
- 0926-6690
- Subject:
- Brassica juncea; USDA; biodiesel; chromosomes; feedstocks; genetic improvement; genetic variation; genome-wide association study; genomics; genotyping by sequencing; heterozygosity; lipid content; marker-assisted selection; petroleum; population structure; variance; Central Asia; India; Pakistan
- Abstract:
- ... The success of plant biofuels relies on finding inexpensive feedstocks that do not compete with food crops and can be cultivated economically in diverse geographical regions and agricultural production systems. Brassica juncea L. is a native crop of the western and central Asia, is considered a good biodiesel candidate due to its high oil content with high unsaturated fatty acids that can be refin ...
- Handle:
- 10113/7834650
- DOI:
- 10.1016/j.indcrop.2022.115379
- https://doi.org/10.1016/j.indcrop.2022.115379
- Author:
- Hussein Abdel‐Haleem, et al. ; Jun Zhang; Samuel Clay McDonald; Chengjun Wu; Miles W. Ingwers; Pengyin Chen; Zenglu Li; Show all 7 Authors
- Source:
- Plant breeding 2022 v.141 no.2 pp. 236-245
- ISSN:
- 0179-9541
- Subject:
- Glycine max; analysis of variance; cultivars; genotype; genotype-environment interaction; genotyping; hypoxia; inbred lines; phenotypic variation; prediction; quantitative traits; soybeans; survival rate
- Abstract:
- ... Flooding stress typically causes oxygen deprivation (hypoxia) in plants, which damages roots and substantially affects soybean growth, survival and yield. Identifying quantitative trait loci (QTLs) and understanding the inheritance of flooding tolerance will help in developing soybean cultivars with tolerance to flooding. The objective of this study was to map QTLs responsible for flooding toleran ...
- Handle:
- 10113/7709491
- DOI:
- 10.1111/pbr.13008
- https://doi.org/10.1111/pbr.13008
- Author:
- Hussein Abdel-Haleem, et al. ; Zinan Luo Lily; Noah Fahlgren; Toni Kutchan; Daniel Schachtman; Yufeng Ge; Russ Gesch; Sheeja George; John Dyer; Show all 9 Authors
- Source:
- Industrial crops and products 2021 v.173 pp. 114104
- ISSN:
- 0926-6690
- Subject:
- Camelina sativa; genome-wide association study; germplasm; gibberellic acid; heritability; industrial crops; oilseeds; phenotype; prediction; spring; vernalization; zinc finger motif
- Abstract:
- ... Camelina sativa is a promising oilseed and industrial crop that benefits sustainable food, feed and fuel industries. Early flowering is critical for local adaptation as well as maximizing yield in Camelina sativa. Even though the preliminary data indicated wide variation in flowering time in the spring camelina germplasm, our understanding of underlying genes and their roles in regulating flower d ...
- DOI:
- 10.1016/j.indcrop.2021.114104
- https://doi.org/10.1016/j.indcrop.2021.114104
- Author:
- Hussein Abdel-Haleem, et al. ; Zinan Luo; Aaron Szczepanek; Show all 3 Authors
- Source:
- Agronomy 2020 v.10 no.9 pp. -
- ISSN:
- 2073-4395
- Subject:
- Camelina sativa; biofuels; cell membranes; cultivars; diet-related diseases; feedstocks; genes; genome-wide association study; genotype; greenhouse gases; lipid content; oils; oilseed crops; osmotic stress; oxidative stress; petroleum; phenotype; phosphates; photosynthesis; phytomass; roots; salt stress; seed germination; seedlings; signal transduction; single nucleotide polymorphism; sodium; sodium chloride; solid wastes; spring; toxicity; unsaturated fatty acids
- Abstract:
- ... Camelina sativa is an important renewable oilseed crop for biofuel and feedstock that can relieve the reliance on petroleum-derived oils and reduce greenhouse gases and waste solids resulting from petroleum-derived oils consumption. C. sativa has recently seen revived attention due to its high oil content, high omega-3 unsaturated fatty acids, short life cycle, broader regional adaptation, and low ...
- Handle:
- 10113/7115947
- DOI:
- 10.3390/agronomy10091444
- https://doi.org/10.3390/agronomy10091444
- Author:
- Hussein Abdel-Haleem, et al. ; Zinan Luo; Charles A. Mullen; Show all 3 Authors
- Source:
- Industrial crops and products 2020 v.155 pp. 112810
- ISSN:
- 0926-6690
- Subject:
- Parthenium argentatum; acetic acid; alkylphenols; aromatic hydrocarbons; biochar; biofuels; biomass; cellulose; furans; gas chromatography-mass spectrometry; gases; genetic variation; genotype; guaiacol; guayule; irrigated farming; irrigation rates; lignin; limonene; pyrolysis; resins; rubber
- Abstract:
- ... In addition to the commonly known use as an alternative source for natural rubber and hypoallergenic latex, guayule could also be a source of resin and bagasse for use in the pharmaceutical and biofuel industries. Pyrolysis is a method to convert guayule biomass into liquid (condensable gas or bio-oil), which can be an intermediate towards production of biofuels and/or renewable chemicals. In this ...
- Handle:
- 10113/7045867
- DOI:
- 10.1016/j.indcrop.2020.112810
- CHORUS:
- 10.1016/j.indcrop.2020.112810
- https://doi.org/10.1016/j.indcrop.2020.112810
- Author:
- Hussein Abdel-Haleem, et al. ; Zinan Luo; Kelly R. Thorp; Show all 3 Authors
- Source:
- Plant methods 2019 v.15 no.1 pp. 154
- ISSN:
- 1746-4811
- Subject:
- Parthenium argentatum; cultivars; germplasm conservation; guayule; irrigation; least squares; models; near-infrared spectroscopy; prediction; rapid methods; resins; rubber; semiarid zones; wavelengths; Arizona
- Abstract:
- ... BACKGROUND: Guayule (Parthenium argentatum A. Gray), a plant native to semi-arid regions of northern Mexico and southern Texas in the United States, is an alternative source for natural rubber (NR). Rapid screening tools are needed to replace the current labor-intensive and cost-inefficient method for quantifying rubber and resin contents. Near-infrared (NIR) spectroscopy is a promising technique ...
- Handle:
- 10113/6788270
- DOI:
- 10.1186/s13007-019-0544-3
- PubMed:
- 31889978
- PubMed Central:
- PMC6916029
- CHORUS:
- 10.1186/s13007-019-0544-3
- https://doi.org/10.1186/s13007-019-0544-3
- Author:
- Hussein Abdel-Haleem, et al. ; Zinan Luo; Pernell Tomasi; Noah Fahlgren; Show all 4 Authors
- Source:
- BMC plant biology 2019 v.19 no.1 pp. 187
- ISSN:
- 1471-2229
- Subject:
- Camelina sativa; alcohols; alkanes; arid zones; biofuels; biosynthesis; carbon; cultivars; drought tolerance; endoplasmic reticulum; energy; epicuticular wax; fossil fuels; genes; genome-wide association study; genotyping by sequencing; greenhouse gases; leaves; lipid content; loci; marker-assisted selection; oilseed crops; omega-3 fatty acids; phenotype; plant development; plasma membrane; secretion; single nucleotide polymorphism; spring; wax esters
- Abstract:
- ... BACKGROUND: It is important to explore renewable alternatives (e.g. biofuels) that can produce energy sources to help reduce reliance on fossil oils, and reduce greenhouse gases and waste solids resulted from fossil oils consumption. Camelina sativa is an oilseed crop which has received increasing attention due to its short life cycle, broader adaptation regions, high oil content, high level of om ...
- Handle:
- 10113/6428482
- DOI:
- 10.1186/s12870-019-1776-0
- PubMed:
- 31064322
- PubMed Central:
- PMC6505076
- CHORUS:
- 10.1186/s12870-019-1776-0
- https://doi.org/10.1186/s12870-019-1776-0
- Author:
- Hussein Abdel-Haleem, et al. ; Zinan Luo; Show all 2 Author
- Source:
- Industrial crops and products 2019 v.142 pp. 111867
- ISSN:
- 0926-6690
- Subject:
- Parthenium argentatum; USDA; agronomic traits; deserts; environmental impact; genetic improvement; genetic variation; genotype-environment interaction; germplasm conservation; guayule; heritability; industrial byproducts; industry; irrigation; latex; phenotype; phenotypic variation; phytomass; ploidy; resins; rubber; water stress; Mexico; Texas
- Abstract:
- ... Parthenium argentatum (guayule), originated from northern Mexico and southern Texas deserts, is a good candidate for arid and semi-arid sustainable agricultural systems to produce domestic natural rubber and other industrial byproducts. Exploring the genetic and phenotypic diversities of guayule germplasm collections is required for continuous genetic improvement of guayule characteristics to meet ...
- Handle:
- 10113/6739295
- DOI:
- 10.1016/j.indcrop.2019.111867
- CHORUS:
- 10.1016/j.indcrop.2019.111867
- https://doi.org/10.1016/j.indcrop.2019.111867
- Author:
- Hussein Abdel-Haleem, et al. ; Quinn Waltz; Greg Leake; Show all 3 Authors
- Source:
- Industrial crops and products 2019 v.133 pp. 292-294
- ISSN:
- 0926-6690
- Subject:
- Parthenium argentatum; genetic improvement; genotype; germplasm; guayule; paraquat; pesticide application; plant establishment; plant height; rubber; seedlings; semiarid zones; survival rate; viability; weed control
- Abstract:
- ... Guayule (Parthenium argentatum Gray) is gaining a wide attention as natural rubber crop that is successfully grow in the arid and semi-arid regions. Genetically improving of guayule germplasm for higher rubber production and maximizing agronomic practices are the prioritized research areas. Among agronomic practices is weed control, where weeds compete with guayule plants and thus could reduce its ...
- Handle:
- 10113/6340081
- DOI:
- 10.1016/j.indcrop.2019.03.041
- https://doi.org/10.1016/j.indcrop.2019.03.041
- Author:
- Hussein Abdel-Haleem, et al. ; Mike Foster; Dennis Ray; Terry Coffelt; Show all 4 Authors
- Source:
- Industrial crops and products 2018 v.112 pp. 691-697
- ISSN:
- 0926-6690
- Subject:
- Parthenium argentatum; biomass; breeding programs; correlation; deserts; developmental stages; genetic variation; germplasm; guayule; heritability; industrial byproducts; industry; phenotypic variation; rubber; Mexico; Texas
- Abstract:
- ... Gauyaule (Parthenium argentatum Gray) originated in the Southern Texas and Northern Mexico deserts, which suggests it as a good candidate for arid and semi-arid sustainable agricultural systems to produce natural rubber and other industrial byproducts. Continued improvement of guayule for higher biomass, rubber and resin production, and high resistance to environmental stresses, are required and n ...
- DOI:
- 10.1016/j.indcrop.2017.12.072
- https://doi.org/10.1016/j.indcrop.2017.12.072
- Author:
- Hussein Abdel-Haleem, et al. ; Pernell Tomasi; John M. Dyer; Mathew A. Jenks; Show all 4 Authors
- Source:
- Industrial crops and products 2018 v.112 pp. 247-251
- ISSN:
- 0926-6690
- Subject:
- Camelina sativa; alcohols; alkanes; arid zones; biochemical pathways; bioenergy; breeding programs; cultivars; drought; drought tolerance; epicuticular wax; genes; genetic markers; growing season; heritability; leaves; lipid content; oilseed crops; oilseeds; phenotypic variation; polyunsaturated fatty acids; regulatory sequences; spring
- Abstract:
- ... Among oilseed species, Camelina has received considerable attention as an oilseed crop that can be manipulated easily to meet important non-food bioenergy requirements, where it is relatively high in oil content and polyunsaturated fatty acids, and has a very short growing season with fairly good adaption to marginal lands and low input agricultural systems. To expand Camelina cultivation zones in ...
- DOI:
- 10.1016/j.indcrop.2017.11.054
- CHORUS:
- 10.1016/j.indcrop.2017.11.054
- https://doi.org/10.1016/j.indcrop.2017.11.054
- Author:
- Hussein Abdel‐Haleem, et al. ; Jeffrey D. Boehm Jr.; William T. Schapaugh Jr.; Katy Rainey; Vincent R. Pantalone; Grover Shannon; Jim Klein; Thomas E. Carter Jr.; Andrea J. Cardinal; Emerson R. Shipe; Anne M. Gillen; James R. Smith; Pengyin Chen; David B. Weaver; H. Roger Boerma; Zenglu Li; Show all 16 Authors
- Source:
- Crop science 2019 v.59 no.5 pp. 1838-1852
- ISSN:
- 0011-183X
- Subject:
- Glycine max; genetic improvement; linear models; maturity groups; regression analysis; seed yield; soybeans; vegetable oil; Southeastern United States
- Abstract:
- ... Soybean [Glycine max (L.) Merr.] is an important source of protein and vegetable oil. Genetic improvement of soybean seed yield and composition are ultimate breeding goals. During the past 80 yr, breeders have selected for high yield and other desired traits to make genetic improvements. To quantify the genetic changes to seed yield, yield stability, and other important agronomic and end‐use quali ...
- Handle:
- 10113/6771636
- DOI:
- 10.2135/cropsci2018.10.0627
- https://doi.org/10.2135/cropsci2018.10.0627
- Author:
- Hussein Abdel-Haleem, et al. ; Thomas E. Carter Jr.; Thomas W. Rufty; H. Roger Boerma; Zenglu Li; Show all 5 Authors
- Source:
- Molecular breeding 2014 v.33 no.4 pp. 851-862
- ISSN:
- 1380-3743
- Subject:
- abiotic stress; acid soils; aluminum; chromosomes; citrate (si)-synthase; crop production; cultivars; genes; marker-assisted selection; microsatellite repeats; phenotypic variation; quantitative trait loci; restriction fragment length polymorphism; single nucleotide polymorphism; soybeans; toxicity
- Abstract:
- ... Aluminum (Al) toxicity is an important abiotic stress that affects soybean production in acidic soils throughout the world. Development of Al-tolerant cultivars is an efficient and environmentally friendly solution to the problem. A previous report identified quantitative trait loci (QTL) for Al tolerance inherited from PI 416937, using restriction fragment length polymorphism markers, in a popula ...
- DOI:
- 10.1007/s11032-013-9999-5
- https://doi.org/10.1007/s11032-013-9999-5
- Author:
- Hussein Abdel-Haleem, et al. ; Pengsheng Ji; H Roger Boerma; Zenglu Li; Show all 4 Authors
- Source:
- Plant methods 2013 v.9 no.1 pp. 265
- ISSN:
- 1746-4811
- Subject:
- crops; genome; genotype; genotyping; loci; parents; progeny; single nucleotide polymorphism; soybeans
- Abstract:
- ... BACKGROUND: With the advancement of genotyping technologies, whole genome and high-density SNP markers have been widely used for genotyping of mapping populations and for characterization of germplasm lines in many crops. Before conducting SNP data analysis, it is necessary to check the individuals to ensure the integrity of lines for further data analysis. RESULTS: We have developed an R package ...
- DOI:
- 10.1186/1746-4811-9-44
- PubMed:
- 24245988
- PubMed Central:
- PMC3842643
- https://doi.org/10.1186/1746-4811-9-44
- Author:
- Hussein Abdel-Haleem, et al. ; Elodie Gazave; Erica E. Tassone; Matheus Baseggio; Michelle Cryder; Kelli Byriel; Emily Oblath; Shiloh Lueschow; Dave Poss; Cody Hardy; Megan Wingerson; James B. Davis; David M. Grant; Jerry L. Hatfield; Terry A. Isbell; Merle F. Vigil; John M. Dyer; Matthew A. Jenks; Jack Brown; Michael A. Gore; Duke Pauli; Show all 21 Authors
- Source:
- Industrial crops and products 2020 v.145 pp. 112080
- ISSN:
- 0926-6690
- Subject:
- Brassica napus; enzymes; fatty acids; genes; genetic improvement; genome-wide association study; lipid content; marker-assisted selection; metabolism; phenotypic variation; prediction; renewable energy sources; seed characteristics; seed oils; single nucleotide polymorphism; United States
- Abstract:
- ... Brassica napus L. represents a potential plant feedstock for the sustainable production of hydrotreated renewable fuels needed to support carbon-based energy production. However, to increase the use of plant-derived oils for energy needs, breeding efforts are required to optimize the amount and profile of fatty acids (FAs) contained in the oil extracted from B. napus seed to meet demands of the va ...
- Handle:
- 10113/6800326
- DOI:
- 10.1016/j.indcrop.2019.112080
- CHORUS:
- 10.1016/j.indcrop.2019.112080
- https://doi.org/10.1016/j.indcrop.2019.112080
- Author:
- Hussein Abdel‐Haleem, et al. ; Caleb Van Warrington; James H. Orf; Arthur S. Killam; Nick Bajjalieh; Zenglu Li; H. Roger Boerma; Show all 7 Authors
- Source:
- Crop science 2014 v.54 no.3 pp. 963-970
- ISSN:
- 0011-183X
- Subject:
- Glycine max; amino acid composition; crude protein; cysteine; genotype; genotype-environment interaction; lysine; methionine; oils; plant height; resource allocation; seed weight; seed yield; soybeans; threonine; variance
- Abstract:
- ... Soybean [Glycine max (L.) Merr.] is the one of the world's leading sources of oil and high‐quality protein meal. An understanding of genotype × environment (G × E) interactions associated with crude protein (cp), and amino acids lysine (Lys), threonine (Thr), methionine (Met), and cysteine (Cys) would aid breeders in their selection efforts. The objectives of this study were to determine the impac ...
- DOI:
- 10.2135/cropsci2013.12.0799
- https://doi.org/10.2135/cropsci2013.12.0799
- Author:
- Hussein Abdel-Haleem, et al. ; Anh-Tung Pham; Kaitlin McNally; H. Roger Boerma; Zenglu Li; Show all 5 Authors
- Source:
- Theoretical and applied genetics 2013 v.126 no.7 pp. 1825-1838
- ISSN:
- 0040-5752
- Subject:
- quantitative polymerase chain reaction; quantitative trait loci; microsatellite repeats; chromosomes; cell walls; Meloidogyne incognita; soybeans; genotype; egg production; inbred lines; mutants; root-knot nematodes; exons; single nucleotide polymorphism
- Abstract:
- ... Meloidogyne incognita (Kofoid and White) Chitwood (Mi) is the most economically damaging species of the root-knot nematode to soybean and other crops in the southern USA. PI 96354 was identified to carry a high level of resistance to galling and Mi egg production. Two Quantitative Trait Locus (QTLs) were found to condition the resistance in PI 96354 including a major QTL and a minor QTL on chromos ...
- DOI:
- 10.1007/s00122-013-2095-8
- PubMed:
- 23568221
- https://doi.org/10.1007/s00122-013-2095-8
- Author:
- Hussein Abdel-Haleem, et al. ; Jan G. P. Bowman; Lisa Surber; Tom Blake; Show all 4 Authors
- Source:
- Molecular breeding 2012 v.29 no.2 pp. 503-514
- ISSN:
- 1380-3743
- Subject:
- acid detergent fiber; animal performance; barley; beef cattle; beef quality; early selection; feed quality; genetic variation; genotype; heritability; loci; marker-assisted selection; planting; quantitative trait loci; starch; North America
- Abstract:
- ... Barley is a major feed source for livestock in the western regions of North America. Feed quality of beef cattle has been neglected as a selection criterion because of lack of understanding of the feed characteristics that could be responsive to selection and would improve feedlot performance. A Steptoe × Morex population was planted in irrigated and rain-fed environments, and collected data were ...
- DOI:
- 10.1007/s11032-011-9567-9
- https://doi.org/10.1007/s11032-011-9567-9
- Author:
- Hussein Abdel-Haleem, et al. ; Jin Hee Shin; Justin N Vaughn; Carolina Chavarro; Brian Abernathy; Kyung Do Kim; Scott A Jackson; Zenglu Li; Show all 8 Authors
- Source:
- BMC plant biology 2015 v.15 no.1 pp. 26
- ISSN:
- 1471-2229
- Subject:
- Glycine max; chromatin; cultivars; drought; genes; genotype; genotype-environment interaction; phenotype; photosynthesis; quantitative trait loci; soybeans; stress response; transcription (genetics); transcriptomics; water stress; wilting
- Abstract:
- ... BACKGROUND: Among abiotic stresses, drought is the most common reducer of crop yields. The slow-wilting soybean genotype PI 416937 is somewhat robust to water deficit and has been used previously to map the trait in a bi-parental population. Since drought stress response is a complex biological process, whole genome transcriptome analysis was performed to obtain a deeper understanding of the droug ...
- DOI:
- 10.1186/s12870-015-0422-8
- PubMed:
- 25644024
- PubMed Central:
- PMC4322458
- https://doi.org/10.1186/s12870-015-0422-8