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1. A GWAS identified a major QTL for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a MAGIC population of Upland cotton and a meta-analysis of QTLs for Fusarium wilt resistance

Author:
Johnie N. Jenkins,   et al.   ; Yi Zhu; Gregory N. Thyssen; Abdelraheem Abdelraheem; Zonghua Teng; David D. Fang; Jack C. McCarty; Tom Wedegaertner; Kater Hake; Jinfa Zhang;     Show all 10 Authors
Source:
Theoretical and applied genetics 2022 v.135 no.7 pp. 2297-2312
ISSN:
0040-5752
Subject:
Fusarium oxysporum f. sp. vasinfectum; Fusarium wilt; Gossypium hirsutum; chromosomes; cotton; cultivars; genes; genome-wide association study; genomics; meta-analysis; phenotype
Abstract:
... KEY MESSAGE: A major QTL conferring resistance to Fusarium wilt race 4 in a narrow region of chromosome D02 was identified in a MAGIC population of 550 RILs of Upland cotton. Numerous studies have been conducted to investigate the genetic basis of Fusarium wilt (FW, caused by Fusarium oxysporum f. sp. vasinfectum, FOV) resistance using bi-parental and association mapping populations in cotton. In ...
DOI:
10.1007/s00122-022-04113-z

2. Registration of seven recombinant inbred lines of upland cotton with improved fiber length or strength

Author:
Johnie N. Jenkins,   et al.   ; Jack C. McCarty Jr.; Russell W. Hayes; Martin J. Wubben; David D. Fang; Gregory N. Thyssen; Linghe Zeng; B. Todd Campbell; Don C. Jones;     Show all 9 Authors
Source:
Journal of plant registrations 2022 v.16 no.1 pp. 94-99
ISSN:
1936-5209
Subject:
Gossypium hirsutum; genetic background; homozygosity; quantitative trait loci
Abstract:
... The genetic base for upland cotton (Gossypium hirsutum L.) is narrow for the economically important fiber traits of strength and length. We developed random mated population RMUP‐C5 from 11 parental lines and released seed in 2008. We have now developed 550 recombinant inbred lines (RILs) from this population and evaluated them for fiber properties in eight environments. We report the development ...
DOI:
10.1002/plr2.20193

3. Pelleted biosolids and cover crop effects on major Southern row crops

Author:
Johnie N. Jenkins,   et al.   ; Ardeshir Adeli; John P. Brooks; John J. Read;     Show all 4 Authors
Source:
Journal of plant nutrition 2021 v.44 no.18 pp. 2677-2690
ISSN:
1532-4087
Subject:
Glycine max; Gossypium hirsutum; Marietta; Triticum aestivum; Zea mays; biosolids; corn; cover crops; crop residues; fallow; grain yield; nitrogen fertilizers; plant nutrition; poultry manure; rowcrops; seed cotton; soil depth; soybeans; winter wheat; Mississippi
Abstract:
... Pelleted biosolids (PBS) can be used as a low-cost nutrient source alternative to conventional fertilizers for row crop production. A field study was conducted on a Marietta loam at the Plant Science Center at Mississippi State to determine the response of row crops to PBS relative to poultry litter (PL) and inorganic fertilizer N in the presence/absence of cover crop residues. Fertilization treat ...
DOI:
10.1080/01904167.2021.1927090

4. Integration of pelleted biosolids with cover crops for improving soil properties

Author:
Johnie N. Jenkins,   et al.   ; Ardeshir Adeli; John P Brooks; Gary Feng; M. Mozaffari;     Show all 5 Authors
Source:
Soil Science Society of America journal 2022 v.86 no.3 pp. 728-741
ISSN:
0361-5995
Subject:
Gossypium hirsutum; Marietta; Triticum aestivum; Zea mays; agroecosystems; biosolids; bulk density; cotton; cover crops; enzymes; experimental design; fallow; infiltration rate; nitrogen fertilizers; poultry manure; resistance to penetration; silt loam soils; winter wheat; Mississippi
Abstract:
... Measuring and assessing soil properties is critical for understanding how changes in agronomic practices affect the capability of soil to support cropping systems. A field study was conducted on a Marietta silt loam soil at the Plant Science Center at Mississippi State University to determine the effects of pelleted biosolids (PBS) relative to poultry litter (PL) and inorganic N fertilizer applied ...
DOI:
10.1002/saj2.20341

5. Yield and nutrient removal of cotton–corn–soybean rotation systems fertilized with poultry litter

Author:
Johnie N. Jenkins,   et al.   ; Haile Tewolde; Normie Buehring; Thomas R. Way; Gary Feng; Zhongqi He; Karamat R. Sistani;     Show all 7 Authors
Source:
Agronomy journal 2021 v.113 no.6 pp. 5483-5498
ISSN:
0002-1962
Subject:
Glycine max; Gossypium hirsutum; Zea mays; agronomy; corn; cotton; crop yield; nitrogen; poultry manure; soybeans
Abstract:
... Exporting excess mineral nutrients from soils that receive repeated poultry litter (PL) applications may be enhanced by rotating crops and fertilizers that increase crop yield. This study determined the magnitude of yield enhancement and mineral nutrient removal at harvest by cotton–corn–soybean rotation systems and by PL‐synthetic fertilizer rotations. Cotton (Gossypium hirsutum L.), corn (Zea ma ...
DOI:
10.1002/agj2.20857

6. GWAS reveals consistent QTL for drought and salt tolerance in a MAGIC population of 550 lines derived from intermating of 11 Upland cotton (Gossypium hirsutum) parents

Author:
Johnie N. Jenkins,   et al.   ; Abdelraheem Abdelraheem; Gregory N. Thyssen; David D. Fang; Jack C. McCarty; Tom Wedegaertner; Jinfa Zhang;     Show all 7 Authors
Source:
Molecular genetics and genomics 2021 v.296 no.1 pp. 119-129
ISSN:
1617-4615
Subject:
Gossypium hirsutum; chromosomes; cotton; cultivars; drought; drought tolerance; genomics; greenhouses; marker-assisted selection; plant height; quantitative traits; salt stress; salt tolerance; seedlings; stress tolerance; transgressive segregation; water stress
Abstract:
... Cotton is grown in arid and semi-arid regions where abiotic stresses such as drought and salt are prevalent. There is a lack of studies that simultaneously address the genetic and genomic basis of tolerance to drought and salt stress. In this study, a multi-parent advanced generation inter-cross (MAGIC) population of 550 recombinant inbred lines (RILs) together with their 11 Upland cotton parents ...
DOI:
10.1007/s00438-020-01733-2

7. Managing harvest of ‘Russell’ and ‘Tifton 44’ bermudagrass receiving broiler litter for nutritive value and phosphorus removal

Author:
Johnie N. Jenkins,   et al.   ; John J. Read; David J. Lang; Ardeshir Adeli;     Show all 4 Authors
Source:
Crop, forage & turfgrass management 2020 v.6 no.1 pp. e20013
ISSN:
2374-3832
Subject:
Cynodon dactylon; biomass; crude protein; cultivars; digestibility; hay; nutritive value; phosphorus; poultry manure; soil; stubble; turf management
Abstract:
... Bermudagrass [Cynodon dactylon (L.) Pers.] hay fields receiving broiler litter offer a means to both produce high quality forage and export excess manure nutrients, for example P. This 3‐yr study determined the nutritive value, P removal, and soil P for ‘Russell’ and ‘Tifton 44’ bermudagrass receiving 4 ton ac⁻¹ broiler litter and 98 lb ac⁻¹ N (as NH₄NO₃) annually and cut at 21‐, 35‐, and 49‐d int ...
DOI:
10.1002/cft2.20013

8. Analysis of Cotton Chromosome 11 and 14 Root-Knot Nematode Resistance Quantitative Trait Loci Effects on Root-Knot Nematode Postinfection Development, Egg Mass Formation, and Fecundity

Author:
Johnie N. Jenkins,   et al.   ; Martin J. Wubben; Amanda G. Gaudin; Jack C. McCarty;     Show all 4 Authors
Source:
Phytopathology 2020 v.110 no.4 pp. 927-932
ISSN:
0031-949X
Subject:
Gossypium hirsutum; Meloidogyne incognita; adults; cotton; egg masses; eggs; fecundity; females; isogenic lines; juveniles; loci; quantitative trait loci; root-knot nematodes
Abstract:
... Cotton (Gossypium hirsutum) resistance to root-knot nematode (RKN) (Meloidogyne incognita) is controlled by quantitative trait loci (QTLs) on chromosomes 11 (CHR11) and 14 (CHR14). The individual contributions of these QTLs to resistance are not completely understood. We developed near isogenic lines susceptible at both loci (null), having CHR11 or CHR14 alone, and having both QTLs (CHR11/CHR14). ...
DOI:
10.1094/PHYTO-09-19-0370-R

9. Effect of chromosome substitutions from Gossypium barbadense L., G. tomentosum Nutt. Ex Seem and G. mustelinum Watt into G. hirsutum L. on cottonseed protein and oil content

Author:
Johnie N. Jenkins,   et al.   ; Sukumar Saha; Nacer Bellaloui; Jack C. McCarty; David M. Stelly;     Show all 5 Authors
Source:
Euphytica 2020 v.216 no.7 pp. 118
ISSN:
0014-2336
Subject:
Gossypium barbadense; Gossypium hirsutum; Gossypium tomentosum; chromosome substitution; cottonseed oil; cottonseed protein; gene pool; genetic improvement; lipid content; plant breeding; polyploidy; protein content; substitution lines; Mississippi; South Carolina
Abstract:
... Cottonseed is the second-most common plant protein source after soybean, and the fifth-most common oil source after soybean, palm tree, colza and sunflower. There has been little economic incentive until recently to breed for cottonseed nutritional components. In our previous studies we used chromosome substitution (CS) lines to associate novel traits of importance with specific substituted chromo ...
Handle:
10113/7005874
DOI:
10.1007/s10681-020-02644-4

10. Assessing the Weed-Suppressing Potential of Cotton Chromosome Substitution Lines Using the Stair-Step Assay

Author:
Johnie N. Jenkins,   et al.   ; Mary Gracen Fuller; Sukumar Saha; David M. Stelly; Te Ming Tseng;     Show all 5 Authors
Source:
Plants 2021 v.10 no.11 pp. -
ISSN:
2223-7747
Subject:
Amaranthus palmeri; chlorophyll; chromosome substitution; cluster analysis; cotton; evolution; genetic traits; growth and development; herbicide resistance; herbicide-resistant weeds; herbicides; weed control
Abstract:
... Palmer amaranth is a problematic common weed species, especially in cotton. With the wide use of chemical herbicide and herbicide-tolerant transgenic cotton lines, Palmer amaranth populations have developed tolerance to commonly used herbicides. It is imperative to develop alternative weed control methods to slow the evolution of herbicide-resistant weed populations and provide new strategies for ...
DOI:
10.3390/plants10112450

11. Effects of inter‐species chromosome substitution on cottonseed mineral and protein nutrition profiles

Author:
Johnie N. Jenkins,   et al.   ; Zhongqi He; Hailin Zhang; David D. Fang; Linghe Zeng; Jack C. McCarty;     Show all 6 Authors
Source:
Agronomy journal 2020 v.112 no.5 pp. 3963-3974
ISSN:
0002-1962
Subject:
Gossypium barbadense; Gossypium hirsutum; boron; calcium; chromosome substitution; copper; cottonseed; cultivars; inbred lines; interspecific hybridization; introgression; iron; magnesium; manganese; mineral content; nickel; phosphorus; plant micronutrients; plant proteins; potassium; protein content; sodium; substitution lines; sulfur; zinc
Abstract:
... Upland cotton (Gossypium hirsutum L.) is the major species of cotton due to its high yield and good adaptability. With much less land area, pima cotton (G. barbadense L.) is also cultivated for its superior fibers. Existing research efforts have mainly focused on introgression of fiber quality traits from pima into upland cotton, with few on the seed mineral and protein contents. In this research, ...
Handle:
10113/7222891
DOI:
10.1002/agj2.20264

12. Impact of Cover Crop on Nutrient Losses in an Upland Soil

Author:
Johnie N. Jenkins,   et al.   ; Ardeshir Adeli; John P. Brooks; John J. Read; Dana M. Miles; Mark W. Shankle;     Show all 6 Authors
Source:
Communications in soil science and plant analysis 2021 v.52 no.5 pp. 536-550
ISSN:
1532-2416
Subject:
Gossypium hirsutum; Triticum aestivum; arid lands; cotton; cover crops; experimental design; fallow; highlands; leachates; lint yield; lysimeters; nitrate nitrogen; nitrogen; no-tillage; phosphorus; plant analysis; poultry manure; runoff; silt loam soils; soluble phosphorus; upland soils; winter wheat; Mississippi
Abstract:
... Nutrient losses through leaching and surface runoff are the main problems in no-till upland soils in Mississippi. A two-year study was conducted in 2016 and 2017 on an Atwood silt loam soil to evaluate the impact of winter wheat (Triticum aestivum L.) cover crop (WCC) in no-till dryland cotton (Gossypium hirsutum L.) received poultry litter (PL) on nitrogen (N) and phosphorus (P) losses in leached ...
DOI:
10.1080/00103624.2020.1862154

13. Application of the Cottonscope for determining fiber maturity and fineness of an upland cotton MAGIC population

Author:
Johnie N. Jenkins,   et al.   ; Hee Jin Kim; Christopher D. Delhom; David D. Fang; Linghe Zeng; Jack C. McCarty; Don C. Jones;     Show all 7 Authors
Source:
Crop science 2020 v.60 no.5 pp. 2266-2279
ISSN:
0011-183X
Subject:
Gossypium hirsutum; advanced fiber information system; cotton; fabrics; fiber quality; fineness; genomics; lint yield; phenotype; technology
Abstract:
... Fineness and maturity are two cotton (Gossypium spp.) fiber properties that respectively estimate the fiber diameter and degree of internal fiber thickening. Cotton researchers have been searching for accurate and efficient ways of measuring them due to their important roles in lint yield, fiber quality, and downstream textile performance. The recent development of the Cottonscope has offered an i ...
DOI:
10.1002/csc2.20197

14. Registration of four upland cotton germplasm lines with elevated levels of seed oil oleic acid

Author:
Johnie N. Jenkins,   et al.   ; Michael K. Dowd; Jack C. McCarty Jr.; Jay Shockey;     Show all 4 Authors
Source:
Journal of plant registrations 2020 v.14 no.1 pp. 64-71
ISSN:
1936-5209
Subject:
Agricultural Research Service; Gossypium hirsutum; Rotylenchulus reniformis; cottonseed oil; fatty acid composition; germplasm; oleic acid; oxidative stability; root-knot nematodes; temperature
Abstract:
... Four upland cotton (Gossypium hirsutum L.) germplasm lines, HOa1 (Reg. no. GP‐1072, PI 691652), HOa2 (Reg. no. GP‐1073, PI 691653), HOa3 (Reg. no. GP‐1074, PI 691654), and HOa4 (Reg. no. GP‐1075, PI 691655), with elevated levels of seed oil oleic acid were developed and released by the USDA‐ARS. High seed oil levels of oleic acid have been reported for a small number of G. barbadense L. accessions ...
DOI:
10.1002/plr2.20017

15. Long-term effect of cover crop on rainwater balance components and use efficiency in the no-tilled and rainfed corn and soybean rotation system

Author:
Johnie N. Jenkins,   et al.   ; Wei Yang; Gary Feng; Ardeshir Adeli; K.C. Kersebaum; Pinfang Li;     Show all 6 Authors
Source:
Agricultural water management 2019 v.219 pp. 27-39
ISSN:
0378-3774
Subject:
Glycine max; Root Zone Water Quality Model; Triticum aestivum; Zea mays; cash crops; corn; cover crops; crop rotation; evaporation; evapotranspiration; grain yield; long term effects; mulches; mulching; production technology; rain; rowcrops; runoff; simulation models; soil water; soybeans; summer; water use efficiency; winter wheat; Mississippi
Abstract:
... Incorporating cover crops into row crop production systems can affect soil water dynamics and crop production. However, the effect of this practice has not been well investigated in the northeast Mississippi USA. We calibrated and validated the cropping system model (Root Zone Water Quality Model, RZWQM2) using 4-yr (2014–2017) field data in the humid Mississippi Blackland Prairie, and also used t ...
DOI:
10.1016/j.agwat.2019.03.022

16. Alteration of root and shoot morphologies by interspecific replacement of individual Upland cotton chromosome or chromosome segment pairs

Author:
Johnie N. Jenkins,   et al.   ; Mirzakamol S. Ayubov; Tokhir M. Norov; Sukumar Saha; Te-Ming Tseng; K. Raja Reddy; Ibrokhim Y. Abdurakhmonov; David M. Stelly;     Show all 8 Authors
Source:
Euphytica 2021 v.217 no.7 pp. 154
ISSN:
0014-2336
Subject:
Gossypium barbadense; Gossypium hirsutum; chromosome substitution; chromosomes; cluster analysis; cost effectiveness; cotton; genetic improvement; leaves; phenotypic variation; root systems; seedlings; tetraploidy
Abstract:
... Genetic approaches often lead to the most cost-effective and efficient means to improve crops, especially those grown widely. But for most crops, cotton included, genetic improvement efforts have focused far more on above-ground plant attributes than on root systems. Root system establishment is crucial to cotton seedling success, subsequent development, crop performance and sustainability. As a f ...
DOI:
10.1007/s10681-021-02771-6

17. Effect of physical damage to early‐ and late‐maturing cotton cultivars

Author:
Johnie N. Jenkins,   et al.   ; Michael T. Plumblee; Darrin M. Dodds; L. Jason Krutz; Tyson B. Raper; Andrea S. Jones; Angus L. Catchot Jr.; J. Trenton Irby;     Show all 8 Authors
Source:
Agronomy journal 2020 v.112 no.2 pp. 1140-1147
ISSN:
0002-1962
Subject:
Gossypium hirsutum; agronomy; crop damage; cultivars; developmental stages; insurance; lint cotton; lint yield; micronaire; plant height
Abstract:
... Determining the effects of timing and intensity of physical damage in cotton (Gossypium hirsutum L.) grown in the Mid‐South could improve management decisions and insurance adjustments after weather‐ or wildlife‐related crop damage has occurred. Research was conducted to quantify the effects of time of damage and intensity of damage on early‐ and late‐maturing cotton varieties in the Mid‐South. Cu ...
DOI:
10.1002/agj2.20104

18. Poultry Litter and Cover Crop Integration into No‐till Cotton on Upland Soil

Author:
Johnie N. Jenkins,   et al.   ; Ardeshir Adeli; John P. Brooks; John J. Read; Mark W. Shankle; Gary Feng;     Show all 6 Authors
Source:
Agronomy journal 2019 v.111 no.4 pp. 2097-2107
ISSN:
0002-1962
Subject:
Gossypium hirsutum; Triticum aestivum; aggregate stability; agronomy; bulk density; cover crops; crop residues; dry season; experimental design; highlands; lint cotton; lint yield; nitrogen fertilizers; no-tillage; plate count; poultry manure; soil depth; soil penetration resistance; soil quality; soluble phosphorus; upland soils; winter wheat; Mississippi
Abstract:
... CORE IDEAS: Applying poultry litter to the top of cover crop residue increased lint yield in drier years.This practice enhanced cotton lint yield, soil C, and soil health.This practice reduced NO₃–N and water‐soluble P by 49 and 22% in 5‐cm soil depth, a zone of plant–soil–water interactions. The influence of poultry litter (PL) and cover crops have under no‐till cropping systems in Mississippi up ...
DOI:
10.2134/agronj2018.05.0328

19. Harvest Management Effects on ‘Tifton 44’ Bermudagrass Phosphorus Removal and Nutritive Value

Author:
Johnie N. Jenkins,   et al.   ; John J. Read; David J. Lang; Ardeshir Adeli;     Show all 4 Authors
Source:
Agronomy journal 2018 v.110 no.3 pp. 879-889
ISSN:
0002-1962
Subject:
Cynodon dactylon; ammonium nitrate; crude protein; cutting; digestibility; farms; livestock; nutritive value; phosphorus; poultry manure; regrowth; ruminants; stubble
Abstract:
... CORE IDEAS: The impact of harvest management on forage nutritive value is vital to farm income.Results validate management practices commonly used but heretofore without statistical basis.Bermudagrass P removal maximized with prolonged harvest interval and short stubble height.Forage nutritive value was similar between stubble heights when harvested every 35 d. Haying bermudagrass [Cynodon dactylo ...
Handle:
10113/6472292
DOI:
10.2134/agronj2017.08.0480

20. Evaluation of genomic selection methods for predicting fiber quality traits in Upland cotton

Author:
Johnie N. Jenkins,   et al.   ; Md Sariful Islam; David D. Fang; Jia Guo; Jack C. McCarty; Don C. Jones;     Show all 6 Authors
Source:
Molecular genetics and genomics 2020 v.295 no.1 pp. 67-79
ISSN:
1617-4615
Subject:
Bayesian theory; Gossypium hirsutum; fiber quality; genomics; genotyping; heritability; lint cotton; marker-assisted selection; phenotype; population size; prediction; progeny
Abstract:
... The use of genomic selection (GS) has stimulated a new way to utilize molecular markers in breeding for complex traits in the absence of phenotypic data. GS can potentially decrease breeding cycle by selecting the progeny in the early stages. The objective of this study was to experimentally evaluate the potential value of genomic selection in Upland cotton breeding. Six fiber quality traits were ...
DOI:
10.1007/s00438-019-01599-z