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- Author:
- Stuart Stephen, et al. ; Donald M. Gardiner; Aurelie H. Benfield; Jiri Stiller; Karen Aitken; Chunji Liu; Kemal Kazan; Show all 7 Authors
- Source:
- Molecular plant pathology 2018 v.19 no.1 pp. 217-226
- ISSN:
- 1464-6722
- Subject:
- Fusarium pseudograminearum; barley; chromosomes; crown rot; genome assembly; genomics; head blight; multigene family; pathogens; phytoalexins; semiarid zones; sexual reproduction; transposition (genetics); wheat
- Abstract:
- ... Fusarium pseudograminearum is an important pathogen of wheat and barley, particularly in semi‐arid environments. Previous genome assemblies for this organism were based entirely on short read data and are highly fragmented. In this work, a genetic map of F. pseudograminearum has been constructed for the first time based on a mapping population of 178 individuals. The genetic map, together with lon ...
- DOI:
- 10.1111/mpp.12519
- PubMed:
- 27888554
- PubMed Central:
- PMC6638115
- https://doi.org/10.1111/mpp.12519
- Author:
- Stuart, Stephen A.
- Source:
- British food journal 2010 v.112 no.1 pp. 21-31
- ISSN:
- 0007-070X
- Subject:
- food intake; food purchasing; nutrition information; ingredients; food choices; consumer attitudes; food policy; nutrition labeling; food law
- Abstract:
- ... Purpose - This pilot study for a larger research project aims to quantify and categorise elements of food label information and establishes an indicative physical relationship between mandatory and other information thereby articulating the relative balance between information intended to inform healthy dietary choices and that intended to perform other functions such as aiding purchase decisions. ...
- DOI:
- 10.1108/00070701011011173
- https://doi.org/10.1108/00070701011011173
- Author:
- Stuart Stephen, et al. ; Qian‐Hao Zhu; Jennifer Taylor; Chris A. Helliwell; Ming‐Bo Wang; Show all 5 Authors
- Source:
- The new phytologist 2014 v.201 no.2 pp. 574-584
- ISSN:
- 0028-646X
- Subject:
- Arabidopsis thaliana; Fusarium oxysporum; RNA interference; disease resistance; pathogens; sequence analysis; transcription (genetics); transcription factors; transcriptome
- Abstract:
- ... Short noncoding RNAs have been demonstrated to play important roles in regulation of gene expression and stress responses, but the repertoire and functions of long noncoding RNAs (lncRNAs) remain largely unexplored, particularly in plants. To explore the role of lncRNAs in disease resistance, we used a strand‐specific RNA‐sequencing approach to identify lncRNAs responsive to Fusarium oxysporum inf ...
- DOI:
- 10.1111/nph.12537
- https://doi.org/10.1111/nph.12537
- Author:
- Stuart Stephen, et al. ; Jose M. Barrero; Colin Cavanagh; Klara L. Verbyla; Josquin F.G. Tibbits; Arunas P. Verbyla; B. Emma Huang; Garry M. Rosewarne; Penghao Wang; Alex Whan; Philippe Rigault; Matthew J. Hayden; Frank Gubler; Show all 13 Authors
- ISSN:
- 1465-6906
- Subject:
- Triticum aestivum; amino acids; breads; chromosome mapping; chromosomes; durum wheat; genes; genotype; hexaploidy; high-throughput nucleotide sequencing; plasma membrane; quantitative trait loci; seed dormancy; sprouting; transcriptomics
- Abstract:
- ... BACKGROUND: Next-generation sequencing technologies provide new opportunities to identify the genetic components responsible for trait variation. However, in species with large polyploid genomes, such as bread wheat, the ability to rapidly identify genes underlying quantitative trait loci (QTL) remains non-trivial. To overcome this, we introduce a novel pipeline that analyses, by RNA-sequencing, m ...
- DOI:
- 10.1186/s13059-015-0665-6
- PubMed:
- 25962727
- PubMed Central:
- PMC4443510
- https://doi.org/10.1186/s13059-015-0665-6
- Author:
- Stuart Stephen, et al. ; Qian-Hao Zhu; Kemal Kazan; Gulei Jin; Longjiang Fan; Jennifer Taylor; Elizabeth S. Dennis; Chris A. Helliwell; Ming-Bo Wang; Show all 9 Authors
- Source:
- Gene 2013 v.512 pp. 259-266
- ISSN:
- 0378-1119
- Subject:
- Arabidopsis; Fusarium oxysporum; disease resistance; fungi; gene expression regulation; genes; mutants; non-coding RNA; transcriptome
- Abstract:
- ... We analyzed the dynamic defense transcriptome responsive to Fusarium oxysporum infection in Arabidopsis using a strand-specific RNA-sequencing approach. Following infection, 177 and 571 genes were up-regulated, 30 and 125 genes were down-regulated at 1 day-post-inoculation (1DPI) and 6DPI, respectively. Of these genes, 116 were up-regulated and seven down-regulated at both time points, suggesting ...
- DOI:
- 10.1016/j.gene.2012.10.036
- PubMed:
- 23107761
- https://doi.org/10.1016/j.gene.2012.10.036
- Author:
- Stuart Stephen, et al. ; Colin R. Cavanagh; Shiaoman Chao; Shichen Wang; Bevan Emma Huang; Seifollah Kiani; Kerrie Forrest; Cyrille Saintenac; Gina L. Brown-Guedira; Alina Akhunova; Deven See; Guihua Bai; Michael Pumphrey; Luxmi Tomar; Debbie Wong; Stephan Kong; Matthew Reynolds; Marta Lopez da Silva; Harold Bockelman; Luther Talbert; James A. Anderson; Susanne Dreisigacker; Stephen Baenziger; Arron Carter; Viktor Korzun; Peter Laurent Morrell; Jorge Dubcovsky; Matthew K. Morell; Mark E. Sorrells; Matthew J. Hayden; Eduard Akhunov; Show all 31 Authors
- Source:
- Proceedings of the National Academy of Sciences of the United States of America 2013 v.110 no.20 pp. 8057-8062
- ISSN:
- 0027-8424
- Subject:
- Triticum aestivum; alleles; artificial selection; crops; disease resistance; environmental factors; flowering; fungal diseases of plants; fungi; genetic improvement; genetic variation; haplotypes; hexaploidy; high-yielding varieties; introgression; landraces; pathogens; phenology; plant breeding; sampling; single nucleotide polymorphism; temporal variation; wheat; wild relatives
- Abstract:
- ... Domesticated crops experience strong human-mediated selection aimed at developing high-yielding varieties adapted to local conditions. To detect regions of the wheat genome subject to selection during improvement, we developed a high-throughput array to interrogate 9,000 gene-associated single-nucleotide polymorphisms (SNP) in a worldwide sample of 2,994 accessions of hexaploid wheat including lan ...
- Handle:
- 10113/57900
- DOI:
- 10.1073/pnas.1217133110
- PubMed:
- 23630259
- PubMed Central:
- PMC3657823
- https://doi.org/10.1073/pnas.1217133110
- Author:
- Stuart Stephen, et al. ; Shichen Wang; Debbie Wong; Kerrie Forrest; Alexandra Allen; Shiaoman Chao; Bevan E. Huang; Marco Maccaferri; Silvio Salvi; Sara G. Milner; Luigi Cattivelli; Anna M. Mastrangelo; Alex Whan; Gary Barker; Ralf Wieseke; Joerg Plieske; Morten Lillemo; Diane Mather; Rudi Appels; Rudy Dolferus; Gina Brown-Guedira; Abraham Korol; Alina R. Akhunova; Catherine Feuillet; Jerome Salse; Michele Morgante; Curtis Pozniak; Ming-Cheng Luo; Jan Dvorak; Matthew Morell; Jorge Dubcovsky; Martin Ganal; Roberto Tuberosa; Cindy Lawley; Ivan Mikoulitch; Colin Cavanagh; Keith J. Edwards; Matthew Hayden; Eduard Akhunov; International Wheat Genome Sequencing Consortium; Show all 40 Authors
- Source:
- Plant biotechnology journal 2014 v.12 no.6 pp. 787-796
- ISSN:
- 1467-7644
- Subject:
- single nucleotide polymorphism; polyploidy; genomics; genetic variation; genotyping; wheat; haplotypes; genes; algorithms; data collection
- Abstract:
- ... High-density single nucleotide polymorphism (SNP) genotyping arrays are a powerful tool for studying genomic patterns of diversity, inferring ancestral relationships between individuals in populations and studying marker-trait associations in mapping experiments. We developed a genotyping array including about 90,000 gene-associated SNPs and used it to characterize genetic variation in allohexaplo ...
- Handle:
- 10113/59609
- DOI:
- 10.1111/pbi.12183
- PubMed:
- 24646323
- PubMed Central:
- PMC4265271
- https://doi.org/10.1111/pbi.12183