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1. Early life history connectivity of Antarctic silverfish (Pleuragramma antarctica) in the Ross Sea

Author:
Zane, Lorenzo,   et al.   ; Brooks, Cassandra M.; Caccavo, Jilda Alicia; Ashford, Julian; Dunbar, Robert; Goetz, Kimberly; La Mesa, Mario;     Show all 7 Authors
Source:
Fisheries oceanography 2018 v.27 no.3 pp. 274-287
ISSN:
1054-6006
Subject:
Lepismatidae; Pleuragramma antarctica; continental shelf; eggs; fish; forage; hatching date; ice; larvae; life history; mixing; population density; population structure; prediction; whales; Antarctic region
Abstract:
... A recent population hypothesis for Antarctic silverfish (Pleuragramma antarctica), a critical forage species, argued that interactions between life history and circulation associated with glacial trough systems drive circumpolar distributions over the continental shelf. In the Ross Sea, aggregations of eggs and larvae occur under fast ice in Terra Nova Bay, and the hypothesis predicted that disper ...
DOI:
10.1111/fog.12251

2. Strong genetic isolation despite wide distribution in a commercially exploited coastal shark

Author:
Zane, Lorenzo,   et al.   ; Hull, Kelvin L.; Asbury, Tamaryn A.; da Silva, Charlene; Dicken, Matthew; Veríssimo, Ana; Farrell, Edward D.; Mariani, Stefano; Mazzoldi, Carlotta; Marino, Ilaria A. M.; Maduna, Simo N.; Bester-van der Merwe, Aletta E.;     Show all 12 Authors
Source:
Hydrobiologia 2019 v.838 no.1 pp. 121-137
ISSN:
0018-8158
Subject:
Mustelus mustelus; coasts; fisheries; genetic analysis; genetic markers; genetic variation; haplotypes; microsatellite repeats; mitochondria; population genetics; population structure; sharks; traceability; Africa; Mediterranean Sea
Abstract:
... The common smoothhound, Mustelus mustelus, is an epibenthic species targeted by fisheries around the world driven by the increasing demand for shark products. Given the wide-spread occurrence of this species and corresponding lack of molecular data in many areas of said distribution, baseline molecular assessments of this commercially important shark may contribute to finer-scale analyses in areas ...
DOI:
10.1007/s10750-019-03982-8

3. Potential and realized connectivity of the seagrass Posidonia oceanica and their implication for conservation

Author:
Zane, Lorenzo,   et al.   ; Jahnke, Marlene; Casagrandi, Renato; Melià, Paco; Schiavina, Marcello; Schultz, Stewart T.; Procaccini, Gabriele;     Show all 7 Authors
Source:
Diversity & distributions 2017 v.23 no.12 pp. 1423-1434
ISSN:
1366-9516
Subject:
Posidonia oceanica; biodiversity; data collection; fruits; genetic analysis; genotype; loci; marine protected areas; meadows; microsatellite repeats; models; monitoring; planning; population genetics; seagrasses; sexual reproduction; viability
Abstract:
... AIM: Connectivity assessments are crucial to large‐scale conservation planning, in particular for establishing and monitoring connected networks of marine protected areas (MPAs). Using biophysical modelling and genetic analyses, we assessed potential and realized connectivity among MPA populations of a benthic foundation species, the Mediterranean endemic seagrass Posidonia oceanica. LOCATION: Adr ...
DOI:
10.1111/ddi.12633

4. Genetic variability of the striped venus Chamelea gallina in the northern Adriatic Sea

Author:
Zane, Lorenzo,   et al.   ; Papetti, Chiara; Schiavon, Luca; Milan, Massimo; Lucassen, Magnus; Caccavo, Jilda Alicia; Paterno, Marta; Boscari, Elisa; Marino, Ilaria Anna Maria; Congiu, Leonardo;     Show all 10 Authors
Source:
Fisheries research 2018 v.201 pp. 68-78
ISSN:
0165-7836
Subject:
Chamelea; clams; effective population size; fisheries management; gene flow; genetic similarity; genetic variation; genotype; larvae; microsatellite repeats; mortality; population density; reproductive success; water quality; Adriatic Sea; Mediterranean Sea
Abstract:
... Chamelea gallina is a valuable commercial species in the Mediterranean Sea. The strong fishing pressure on C. gallina in the northern and central Adriatic Sea has paralleled a clear-cut decrease in clam population density and the occurrence of several irregular mortality events. Despite the commercial interest in this species, nothing is known about its genetic sub-structuring at the geographic an ...
DOI:
10.1016/j.fishres.2018.01.006

5. A population genomics insight by 2b‐RAD reveals populations' uniqueness along the Italian coastline in Leptopsammia pruvoti (Scleractinia, Dendrophylliidae)

Author:
Zane, Lorenzo,   et al.   ; Boscari, Elisa; Abbiati, Marco; Badalamenti, Fabio; Bavestrello, Giorgio; Benedetti‐Cecchi, Lisandro; Cannas, Rita; Cau, Angelo; Cerrano, Carlo; Chimienti, Giovanni; Costantini, Federica; Fraschetti, Simonetta; Ingrosso, Gianmarco; Marino, Ilaria A. M.; Mastrototaro, Francesco; Papetti, Chiara; Paterno, Marta; Ponti, Massimo; Congiu, Leonardo;     Show all 19 Authors
Source:
Diversity & distributions 2019 v.25 no.7 pp. 1101-1117
ISSN:
1366-9516
Subject:
Dendrophylliidae; European Union; biodiversity; carbon; coasts; corals; fish; gene flow; genetic markers; genetic variation; genotype; habitats; high-throughput nucleotide sequencing; metagenomics; planning; single nucleotide polymorphism; Adriatic Sea; Italy; Mediterranean Sea
Abstract:
... AIM: Marine bioconstructions such as coralligenous formations are hotspot of biodiversity and play a relevant ecological role in the preservation of biodiversity by providing carbon regulation, protection and nursery areas for several marine species. For this reason, the European Union Habitat Directive included them among priority habitats to be preserved. Although their ecological role is well e ...
DOI:
10.1111/ddi.12918

6. Fast genetic identification of the Beluga sturgeon and its sought-after caviar to stem illegal trade

Author:
Zane, Lorenzo,   et al.   ; Boscari, Elisa; Vitulo, Nicola; Ludwig, Arne; Caruso, Chiara; Mugue, Nikolai S.; Suciu, Radu; Onara, Dalia F.; Papetti, Chiara; Marino, Ilaria A.M.; Congiu, Leonardo;     Show all 11 Authors
Source:
Food control 2017 v.75 pp. 145-152
ISSN:
0956-7135
Subject:
Huso huso; eggs; fish roe; food labeling; foods; genome; hybrids; interspecific variation; introns; markets; molecular cloning; polymerase chain reaction; prices; sequence analysis; single nucleotide polymorphism; sturgeon; trade; transcriptome
Abstract:
... Sturgeons are well known for the delicacy of their eggs, the caviar, one of the most valuable products on the food market. The high price of caviar led in the past to a severe overharvest of wild sturgeon species and to an increase in trade of counterfeit products sold with impunity in spite of the strict trade limitations. A priority in the effort to reduce illegal trading is the development of g ...
DOI:
10.1016/j.foodcont.2016.11.039

7. Genetic differentiation in the ice‐dependent fish Pleuragramma antarctica along the Antarctic Peninsula

Author:
Zane, Lorenzo,   et al.   ; Agostini, Cecilia; Patarnello, Tomaso; Ashford, Julian R.; Torres, Joseph J.; Papetti, Chiara; Crame, Alistair;     Show all 7 Authors
Source:
Journal of biogeography 2015 v.42 no.6 pp. 1103-1113
ISSN:
0305-0270
Subject:
Argyranthemum frutescens; Bayesian theory; Pleuragramma antarctica; expressed sequence tags; gene flow; gene frequency; genetic drift; genetic variation; genotyping; ice; krill; microsatellite repeats; mitochondrial DNA; mixing; pelagic fish; penguins; population structure; seals; trophic relationships; variance; water currents; Antarctic region
Abstract:
... AIM: Pleuragramma antarctica is an Antarctic notothenioid fish with a pelagic life‐cycle. It plays a major trophic role in coastal Antarctic waters as a predator of krill and as prey for penguins and seals. A previous study, using mtDNA to investigate Pleuragramma population structure at multiple Antarctic sites was unable to discriminate between hypotheses of panmixia, with occasional fluctuation ...
DOI:
10.1111/jbi.12497

8. Genome Evolution in the Cold: Antarctic Icefish Muscle Transcriptome Reveals Selective Duplications Increasing Mitochondrial Function

Author:
Zane, Lorenzo,   et al.   ; Coppe, Alessandro; Agostini, Cecilia; Marino, Ilaria A.M.; Bargelloni, Luca; Bortoluzzi, Stefania; Patarnello, Tomaso;     Show all 7 Authors
Source:
Genome biology and evolution 2013 v.5 no.1 pp. 45-60
Subject:
Chionodraco; aerobiosis; antifreeze proteins; biogenesis; bioinformatics; cold; energy; fish; genes; genomics; heat shock response; high-throughput nucleotide sequencing; mitochondria; muscles; oxygen; phylogeny; skeletal muscle; transcriptome; Antarctic region
Abstract:
... Antarctic notothenioids radiated over millions of years in subzero waters, evolving peculiar features, such as antifreeze glycoproteins and absence of heat shock response. Icefish, family Channichthyidae, also lack oxygen-binding proteins and display extreme modifications, including high mitochondrial densities in aerobic tissues. A genomic expansion accompanying the evolution of these fish was re ...
DOI:
10.1093/gbe/evs108
PubMed:
23196969
PubMed Central:
PMC3595028

9. Transcriptomic profiling of male European eel (Anguilla anguilla) livers at sexual maturity

Author:
Zane, Lorenzo,   et al.   ; Churcher, Allison M.; Pujolar, Jose Martin; Milan, Massimo; Huertas, Mar; Hubbard, Peter C.; Bargelloni, Luca; Patarnello, Tomaso; Marino, Ilaria A.M.; Canário, Adelino V.M.;     Show all 10 Authors
Source:
Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics 2015 v.16 pp. 28-35
ISSN:
1744-117X
Subject:
Anguilla anguilla; bile acids; eel; energy; energy metabolism; fatty acids; freshwater; gene expression regulation; genes; immune system; lipid metabolism; liver; males; microarray technology; mitochondria; protein synthesis; reproduction; seawater; sexual maturity; spawning; transcriptomics; Sargasso Sea
Abstract:
... The European eel Anguilla anguilla has a complex life cycle that includes freshwater, seawater and morphologically distinct stages as well as two extreme long distance migrations. Eels do not feed as they migrate across the Atlantic to the Sargasso Sea but nevertheless reach sexual maturity before spawning. It is not yet clear how existing energy stores are used to reach the appropriate developmen ...
DOI:
10.1016/j.cbd.2015.07.002

10. Population genetic structure and gene flow patterns between populations of the Antarctic icefish Chionodraco rastrospinosus

Author:
Zane, Lorenzo,   et al.   ; Papetti, Chiara; Pujolar, Jose Martin; Mezzavilla, Massimo; La Mesa, Mario; Rock, Jennifer; Patarnello, Tomaso;     Show all 7 Authors
Source:
Journal of biogeography 2012 v.39 no.7 pp. 1361-1372
ISSN:
0305-0270
Subject:
Verbesina; fish; gene flow; islands; larvae; marine environment; microsatellite repeats; population structure; Antarctic region
Abstract:
... Aim A lack of genetic structure is predicted for Antarctic fish due to the duration of pelagic larval stages and the strength of the currents in the Southern Ocean, particularly the Antarctic Circumpolar Current. In this study we explored the population structure of the ocellated icefish, Chionodraco rastrospinosus, by means of analysing a total of 394 individuals collected at four geographical ar ...
DOI:
10.1111/j.1365-2699.2011.02682.x

11. Isolation and characterization of microsatellite loci in the icefish Chionodraco rastrospinosus (Perciformes, Notothenioidea, Channichthyidae)

Author:
Zane, Lorenzo,   et al.   ; Papetti, Chiara; Patarnello, Tomaso;     Show all 3 Authors
Source:
Molecular ecology notes 2006 v.6 no.1 pp. 207-209
ISSN:
1471-8278
Subject:
Chionodraco; genetic markers; genomic libraries; heterozygosity; homozygosity; indigenous species; loci; microsatellite repeats; null alleles; population size; Antarctic region; Antarctica
Abstract:
... We characterized eight polymorphic microsatellites in the icefish Chionodraco rastrospinosus (Perciformes, Notothenioidea, Channichthyidae). Microsatellites were isolated from a partial genomic library enriched for an AC motif. Chionodraco rastrospinosus is an endemic species inhabiting southern ocean waters surrounding the Antarctic Peninsula, the South Shetland Islands, and the South Orkney Isla ...
DOI:
10.1111/j.1471-8286.2005.01194.x

12. Characterization of novel microsatellite markers in the Antarctic silverfish Pleuragramma antarcticum and cross species amplification in other Notothenioidei

Author:
Zane, Lorenzo,   et al.   ; Papetti, Chiara; Marino, Ilaria Anna Maria; Agostini, Cecilia; Bisol, Paolo Maria; Patarnello, Tomaso;     Show all 6 Authors
Source:
Conservation genetics resources 2011 v.3 no.2 pp. 259-262
ISSN:
1877-7252
Subject:
Lepismatidae; alleles; global change; heterozygosity; microsatellite repeats; population structure; Antarctic region
Abstract:
... We characterized nine polymorphic microsatellites by an enriched library from the Antarctic silverfish Pleuragramma antarcticum, a key species in the high Antarctic zone of the Southern Ocean. The number of alleles scored ranged from 7 to 39, whereas the observed and expected heterozygosity ranged from 0.4000 to 0.9750 and from 0.3943 to 0.9782, respectively. Cross-amplification was tested in the ...
DOI:
10.1007/s12686-010-9336-9

13. How will fish that evolved at constant sub-zero temperatures cope with global warming? Notothenioids as a case study

Author:
Zane, Lorenzo,   et al.   ; Patarnello, Tomaso; Verde, Cinzia; di Prisco, Guido; Bargelloni, Luca;     Show all 5 Authors
Source:
BioEssays 2011 v.33 no.4 pp. 260-268
ISSN:
0265-9247
Subject:
case studies; cold; fauna; fish; genes; genetic variation; global warming; phenotypic plasticity; population size; temperature; Antarctic region
Abstract:
... Current climate change has raised concerns over the fate of the stenothermal Antarctic marine fauna (animals that evolved to live in narrow ranges of cold temperatures). The present paper focuses on Notothenioidei, a taxonomic group that dominates Antarctic fish. Notothenioids evolved in the Southern Ocean over the last 20 million years, providing an example of a marine species flock with unique a ...
DOI:
10.1002/bies.201000124

14. Genetic patchiness in European eel adults evidenced by molecular genetics and population dynamics modelling

Author:
Zane, Lorenzo,   et al.   ; Pujolar, José Martin; Bevacqua, Daniele; Andrello, Marco; Capoccioni, Fabrizio; Ciccotti, Eleonora; De Leo, Giulio A.;     Show all 7 Authors
Source:
Molecular phylogenetics and evolution 2011 v.58 no.2 pp. 198-206
ISSN:
1055-7903
Subject:
Anguilla anguilla; adults; evolution; genetic markers; genetic variation; life history; microsatellite repeats; models; population dynamics; population structure; reproduction; space and time; spawning
Abstract:
... Disentangling the demographic processes that determine the genetic structure of a given species is a fundamental question in conservation and management. In the present study, the population structure of the European eel was examined with a multidisciplinary approach combining the fields of molecular genetics and population dynamics modelling. First, we analyzed a total of 346 adult specimens of k ...
DOI:
10.1016/j.ympev.2010.11.019
PubMed:
21129491

15. Isolation and characterization of microsatellite loci from yellowtail Seriola dumerilii (Perciformes: Carangidae)

Author:
ZANE, LORENZO,   et al.   ; BABBUCCI, MASSIMILIANO; ANDALORO, FRANCO; PATARNELLO, TOMASO;     Show all 4 Authors
Source:
Molecular ecology notes 2006 v.6 no.4 pp. 1126-1128
ISSN:
1471-8278
Subject:
Seriola rivoliana; alleles; aquaculture; fish; fisheries; genomic libraries; loci; microsatellite repeats; parentage
Abstract:
... The Mediterranean yellowtail Seriola dumerilii (Risso, 1810) is a semi-pelagic fish economically important to fisheries and aquaculture. We developed nine microsatellite primer pairs for this species. Microsatellites were isolated from a partial genomic library enriched for an AC motif. The developed loci proved to be polymorphic showing three to 11 alleles per locus. They can be employed for popu ...
DOI:
10.1111/j.1471-8286.2006.01459.x

16. Isolation of microsatellite loci and cross-species amplifications in three gobiid fish of the genus Pomatoschistus

Author:
ZANE, LORENZO,   et al.   ; BERREBI, PATRICK; LASSERRE, BERNARD; BARBISAN, FEDERICA;     Show all 4 Authors
Source:
Molecular ecology notes 2006 v.6 no.3 pp. 724-727
ISSN:
1471-8278
Subject:
Pomatoschistus minutus; fish; loci; mating systems; microsatellite repeats; models
Abstract:
... Gobiids of the genus Pomatoschistus are increasingly being investigated as models for adaptation to coastal environments and for mating system studies. Among the dozen currently analysed species, microsatellite primers have been characterized only for Pomatoschistus minutus. This paper describes seven new polymorphic loci isolated from Pomatoschistus marmoratus and Pomatoschistus microps, two spec ...
DOI:
10.1111/j.1471-8286.2006.01322.x

17. Characterization of polymorphic microsatellite loci in the marine isopod Sphaeroma terebrans (Crustacea, Isopoda)

Author:
ZANE, LORENZO,   et al.   ; BARATTI, MARIELLA; FILIPPELLI, MARIATERESA; MESSANA, GIUSEPPE; PAPETTI, CHIARA; PATARNELLO, TOMASO;     Show all 6 Authors
Source:
Molecular ecology resources 2009 v.9 no.4 pp. 1229-1231
ISSN:
1755-0998
Subject:
Isopoda; heterozygosity; loci; microsatellite repeats; null alleles; parentage; phylogeography
Abstract:
... Nine polymorphic microsatellites were characterized in the marine isopod Sphaeroma terebrans (Isopoda, Sphaeromatidae) for phylogeographic and parentage analyses. The number of alleles ranged from 3 to 10. Observed heterozygosity ranged from 0.428 to 0.950, while expected heterozygosity ranged from 0.532 to 0.889. Heterozygote deficiency was detected for one locus, possibly the result of null alle ...
DOI:
10.1111/j.1755-0998.2009.02666.x
PubMed:
21564886

18. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes

Author:
Zane, Lorenzo,   et al.   ; Near, Thomas J.; Dornburg, Alex; Kuhn, Kristen L.; Eastman, Joseph T.; Pennington, Jillian N.; Patarnello, Tomaso; Fernández, Daniel A.; Jones, Christopher D.;     Show all 9 Authors
Source:
Proceedings of the National Academy of Sciences of the United States of America 2012 v.109 no.9 pp. 3434-3439
ISSN:
0027-8424
Subject:
adaptive radiation; climate change; cooling; fish; glaciers; glycoproteins; ice; niches; phylogeny; species diversity; Antarctic region; Antarctica
Abstract:
... The Southern Ocean around Antarctica is among the most rapidly warming regions on Earth, but has experienced episodic climate change during the past 40 million years. It remains unclear how ancient periods of climate change have shaped Antarctic biodiversity. The origin of antifreeze glycoproteins (AFGPs) in Antarctic notothenioid fishes has become a classic example of how the evolution of a key i ...
DOI:
10.1073/pnas.1115169109
PubMed:
22331888
PubMed Central:
PMC3295276

19. Spatio-temporal population structuring and genetic diversity retention in depleted Atlantic Bluefin tuna of the Mediterranean Sea

Author:
Zane, Lorenzo,   et al.   ; Riccioni, Giulia; Landi, Monica; Ferrara, Giorgia; Milano, Ilaria; Cariani, Alessia; Sella, Massimo; Barbujani, Guido; Tinti, Fausto;     Show all 9 Authors
Source:
Proceedings of the National Academy of Sciences of the United States of America 2010 v.107 no.5 pp. 2102-2107
ISSN:
0027-8424
Subject:
Thunnus thynnus; developmental stages; fisheries; genetic variation; marine fish; microsatellite repeats; migratory behavior; population dynamics; population size; space and time; statistics; Mediterranean Sea
Abstract:
... Fishery genetics have greatly changed our understanding of population dynamics and structuring in marine fish. In this study, we show that the Atlantic Bluefin tuna (ABFT, Thunnus thynnus), an oceanic predatory species exhibiting highly migratory behavior, large population size, and high potential for dispersal during early life stages, displays significant genetic differences over space and time, ...
DOI:
10.1073/pnas.0908281107
PubMed:
20080643
PubMed Central:
PMC2836650

20. Isolation and characterization of microsatellite loci in the Mediterranean shore crab Carcinus aestuarii (Decapoda, Portunidae)

Author:
ZANE, LORENZO,   et al.   ; MARINO, ILARIA A.M.; BARBISAN, FEDERICA; GENNARI, MICOL; BISOL, PAOLO MARIA;     Show all 5 Authors
Source:
Molecular ecology notes 2008 v.8 no.2 pp. 370-372
ISSN:
1471-8278
Subject:
Carcinus maenas; alleles; crabs; genetic markers; genomic libraries; heterozygosity; linkage disequilibrium; loci; microsatellite repeats
Abstract:
... We characterized nine polymorphic microsatellites in the Mediterranean shore crab Carcinus aestuarii (Decapoda: Portunidae). Microsatellites were isolated from a partial genomic library enriched for multiple motifs. All loci were polymorphic, with number of alleles ranging from two to 16 and a mean observed heterozygosity of 0.75. Seven loci were in Hardy-Weinberg equilibrium, and two showed weak ...
DOI:
10.1111/j.1471-8286.2007.01960.x