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1. Global transcriptomic response of Listeria monocytogenes during growth on cantaloupe slices

Author:
Kang, Jihun; Burall, Laurel; Mammel, Mark K.; Datta, Atin R.
Source:
Food microbiology 2019 v.77 pp. 192-201
ISSN:
0740-0020
Subject:
carbohydrate metabolism,   etc   ; Listeria monocytogenes; biosynthesis; cantaloupes; foods; gastric juice; gene expression regulation; iron; isoleucine; leucine; messenger RNA; microarray technology; operon; pathogens; refrigeration; transcription (genetics); transcriptomics; valine; virulence;     Show all 19 Subjects
Abstract:
... Understanding a pathogen's response to food environments is imperative to develop effective control strategies as well as to elucidate the impact of foods on virulence potential. The purpose of this study was to assess transcriptional response of Listeria monocytogenes after growth in cantaloupe, as well as its impact on survival in synthetic gastric fluid (SGF). The transcriptional profiles of L. ...
DOI:
10.1016/j.fm.2018.09.012

2. DNA methylation footprints during soybean domestication and improvement

Author:
Shen, Yanting; Zhang, Jixiang; Liu, Yucheng; Liu, Shulin; Liu, Zhi; Duan, Zongbiao; Wang, Zheng; Zhu, Baoge; Guo, Ya-Long; Tian, Zhixi
Source:
Genome biology 2018 v.19 no.1 pp. 128
ISSN:
1474-760X
Subject:
carbohydrate metabolism,   etc   ; DNA methylation; bisulfites; cultivars; domestication; epigenetics; genes; genetic variation; landraces; sequence analysis; soybeans;     Show all 11 Subjects
Abstract:
... BACKGROUND: In addition to genetic variation, epigenetic variation plays an important role in determining various biological processes. The importance of natural genetic variation to crop domestication and improvement has been widely investigated. However, the contribution of epigenetic variation in crop domestication at population level has rarely been explored. RESULTS: To understand the impact ...
DOI:
10.1186/s13059-018-1516-z

3. Impact of anti-acidification microbial consortium on carbohydrate metabolism of key microbes during food waste composting

Author:
Song, Caihong; Li, Mingxiao; Qi, Hui; Zhang, Yali; Liu, Dongming; Xia, Xunfeng; Pan, Hongwei; Xi, Beidou
Source:
Bioresource technology 2018 v.259 pp. 1-9
ISSN:
0960-8524
Subject:
carbohydrate metabolism,   etc   ; biochemical pathways; biotransformation; cellulose; composting; enzymes; food waste; hemicellulose; inoculum; lignin; propionic acid;     Show all 11 Subjects
Abstract:
... This study investigated the effect of anti-acidification microbial consortium (AAMC), which act synergistically for rapid bioconversion of organic acids on carbohydrate metabolism of key microbes in the course of food waste (FW) composting by metaproteomics. AAMC was inoculated to the composting mass and compared with treatment with alkaline compounds and the control without any amendment. Inocula ...
DOI:
10.1016/j.biortech.2018.03.022

4. The role of receptor-like kinases in regulating plant male reproduction

Author:
Cai, Wenguo; Zhang, Dabing
Source:
Plant reproduction 2018 v.31 no.1 pp. 77-87
ISSN:
2194-7953
Subject:
carbohydrate metabolism,   etc   ; cell communication; ligands; males; phosphotransferases (kinases); plant growth; reproduction;     Show all 7 Subjects
Abstract:
... KEY MESSAGE: RLKs in anther development. The cell-to-cell communication is essential for specifying different cell types during plant growth, development and adaption to the ever-changing environment. Plant male reproduction, in particular, requires the exquisitely synchronized development of different cell layers within the male tissue, the anther. Receptor-like kinases (RLKs) belong to a large g ...
DOI:
10.1007/s00497-018-0332-7

5. Improvement in Submergence Tolerance of Cherry Through Regulation of Carbohydrate Metabolism and Plant Growth by PsERF and PsCIPK

Author:
Sheng, Lixia; Meng, Xiangyi; Wang, Meng; Zang, Shu; Feng, Liguo
Source:
Applied biochemistry and biotechnology 2018 v.184 no.1 pp. 63-79
ISSN:
0273-2289
Subject:
carbohydrate metabolism,   etc   ; Prunus pseudocerasus; Prunus serrulata; cherries; flooding tolerance; genes; genetic engineering; germplasm; plant growth; submergence;     Show all 10 Subjects
Abstract:
... Cherry is an important fruit tree with delicious taste and high economic value, which have been planted worldwide. However, this species cannot withstand the presence of excessive amount of water; submergence injury sometimes occurs during cultivation of cherry and results in severe economic losses. By using a submergence-tolerant germplasm Prunus serrulata “Yimeng” and a submergence-sensitive ger ...
DOI:
10.1007/s12010-017-2530-4

6. TiO2 nanoparticles and BPA are combined to impair the development of offspring zebrafish after parental coexposure

Author:
Chen, Lianguo; Hu, Chenyan; Guo, Yongyong; Shi, Qipeng; Zhou, Bingsheng
Source:
Chemosphere 2019 v.217 pp. 732-741
ISSN:
0045-6535
Subject:
carbohydrate metabolism,   etc   ; Danio rerio; adults; aquatic environment; bisphenol A; calcium signaling; developmental toxicity; eggs; embryogenesis; estradiol; fish; larvae; lysosomes; nanoparticles; parents; phagosomes; pollutants; progeny; proteomics; rearing; testosterone; tissues; titanium dioxide; vitellogenin;     Show all 24 Subjects
Abstract:
... Titanium dioxide (TiO2) nanoparticles and bisphenol A (BPA) in aquatic environments interact reciprocally to enhance the maternal transfer of pollutants to offspring, thus varying the innate toxicities during early embryonic development. However, it remains unexplored regarding the molecular mechanisms of developmental toxicity in offspring after parental coexposure. In the present study, adult ze ...
DOI:
10.1016/j.chemosphere.2018.11.052

7. Changes in microbiota along the intestine of grass carp (Ctenopharyngodon idella): Community, interspecific interactions, and functions

Author:
Yang, Gang; Jian, Shao Qing; Cao, Hongzhong; Wen, Chungen; Hu, Baoqing; Peng, Mo; Peng, Liusheng; Yuan, Jianguo; Liang, Lifeng
Source:
Aquaculture 2019 v.498 pp. 151-161
ISSN:
0044-8486
Subject:
carbohydrate metabolism,   etc   ; Bacteroides; Ctenopharyngodon idella; Erysipelotrichaceae; Halomonas; Shewanella; amino acids; carbohydrates; energy; fermentation; herbivorous fish; homeostasis; intestinal microorganisms; intestines; lipid metabolism; microbial communities; microbial competition; models; nutrients; nutrition; ribosomal RNA;     Show all 21 Subjects
Abstract:
... The intestinal microbiota plays crucial roles in the nutrition uptake and metabolism in a herbivorous fish, the grass carp (Ctenopharyngodon idella). Based on the 16S rRNA amplicon data, Firmicutes and Proteobacteria were the two predominant phyla along the intestine; bacterial richness and Shannon diversity index were higher in the middle-intestine than in the fore- and hind-intestine of the gras ...
DOI:
10.1016/j.aquaculture.2018.08.062

8. Nontargeted metabolomic analysis to unravel the impact of di (2-ethylhexyl) phthalate stress on root exudates of alfalfa (Medicago sativa)

Author:
Wang, Yuting; Ren, Wenjie; Li, Yan; Xu, Yongfeng; Teng, Ying; Christie, Peter; Luo, Yongming
Source:
The Science of the total environment 2019 v.646 pp. 212-219
ISSN:
0048-9697
Subject:
carbohydrate metabolism,   etc   ; Medicago sativa; alfalfa; amino acid metabolism; carbohydrates; discriminant analysis; energy transfer; fatty acid metabolism; fatty acids; greenhouses; hydroponics; mass spectrometry; metabolites; phthalates; rhizosphere; root exudates; roots; soil; tricarboxylic acid cycle;     Show all 19 Subjects
Abstract:
... Root exudates are the main media of information communication and energy transfer between plant roots and the soil. Understanding the response of root exudates to contamination stress is crucial in revealing the rhizoremediation mechanisms. Here, we investigate the response of alfalfa root exudates to bis(2-ethylhexyl) phthalate (DEHP) stress based on nontargeted metabolomic analysis. Alfalfa root ...
DOI:
10.1016/j.scitotenv.2018.07.247

9. Biochar influences the succession of microbial communities and the metabolic functions during rice straw composting with pig manure

Author:
Zhou, Guixiang; Xu, Xiaofeng; Qiu, Xiuwen; Zhang, Jiabao
Source:
Bioresource technology 2019 v.272 pp. 10-18
ISSN:
0960-8524
Subject:
carbohydrate metabolism,   etc   ; Firmicutes; Proteobacteria; Saccharomonospora; amino acid metabolism; bacterial communities; biochar; biochemical pathways; community structure; composting; corn straw; energy metabolism; genes; germination; nitrogen content; pig manure; rice straw; temperature; wheat;     Show all 19 Subjects
Abstract:
... The present study determined the dynamic changes of bacterial community structures and its metabolism functions in rice straw composting process with different types of biochar addition. Results showed that both wheat and maize straw biochar addition greatly increased the temperatures and germination index. Biochar addition influenced microbial community structure and metabolic characteristics of ...
DOI:
10.1016/j.biortech.2018.09.135

10. Spatial and molecular changes of mouse brain metabolism in response to immunomodulatory treatment with teriflunomide as visualized by MALDI-MSI

Author:
Rzagalinski, Ignacy; Hainz, Nadine; Meier, Carola; Tschernig, Thomas; Volmer, Dietrich A.
Source:
Analytical and bioanalytical chemistry 2019 v.411 no.2 pp. 353-365
ISSN:
1618-2642
Subject:
carbohydrate metabolism,   etc   ; biochemical pathways; blood-brain barrier; brain; desorption; detection limit; drugs; enzymes; glutathione; image analysis; in vitro studies; ionization; lymphocytes; mass spectrometry; mechanism of action; mice; neurodegenerative diseases; pyrimidine nucleotides; sclerosis;     Show all 19 Subjects
Abstract:
... Multiple sclerosis (MS) is an immune-mediated neurodegenerative disease of the central nervous system (CNS). One of the most promising recent medications for MS is teriflunomide. Its primary mechanism of action is linked to effects on the peripheral immune system by inhibiting dihydroorotate dehydrogenase (DHODH)-catalyzed de novo pyrimidine synthesis and reducing the expansion of lymphocytes in t ...
DOI:
10.1007/s00216-018-1444-5

11. Chemical Intervention: New Tools to Dissect Metabolic Signaling

Author:
Ramon, Matthew; Rolland, Filip
Source:
Trends in plant science 2017 v.22 no.5 pp. 353-355
ISSN:
1360-1385
Subject:
carbohydrate metabolism,   etc   ; growth and development; plants (botany); sugar phosphates; trehalose;     Show all 5 Subjects
Abstract:
... The metabolic intermediate trehalose-6-P (T6P) has emerged as a key regulator of plant growth and development, but the underlying mechanisms remain largely elusive. A recent publication reported a new chemical intervention strategy, providing a powerful tool to dissect T6P-mediated metabolic signaling. ...
DOI:
10.1016/j.tplants.2017.03.006

12. Improving the fermentation performance of Clostridium acetobutylicum ATCC 824 by strengthening the VB1 biosynthesis pathway

Author:
Liao, Zhengping; Suo, Yukai; Xue, Chuang; Fu, Hongxin; Wang, Jufang
Source:
Applied microbiology and biotechnology 2018 v.102 no.18 pp. 8107-8119
ISSN:
0175-7598
Subject:
carbohydrate metabolism,   etc   ; Clostridium acetobutylicum; acids; biomass; biosynthesis; butanol; energy; fermentation; gene overexpression; genes; glucose; lignocellulose; metabolic engineering; solvents; thiamin; xylose;     Show all 16 Subjects
Abstract:
... Vitamin B1 (VB1) is an essential coenzyme for carbohydrate metabolism and involved in energy generation in most organisms. In this study, we found that insufficient biosynthesis of VB1 in Clostridium acetobutylicum ATCC 824 is a major limiting factor for efficient acetone-butanol-ethanol (ABE) fermentation. In order to improve the fermentation performance of C. acetobutylicum ATCC 824, the VB1 bio ...
DOI:
10.1007/s00253-018-9208-x

13. Dynamic of carbohydrate metabolism and the related genes highlights PPP pathway activation during chilling induced bud dormancy release in tree peony (Paeonia suffruticosa)

Author:
Yuxi, Zhang; Dan, Yu; Chunying, Liu; Shupeng, Gai
Source:
Scientia horticulturae 2018 v.242 pp. 36-43
ISSN:
0304-4238
Subject:
carbohydrate metabolism,   etc   ; Paeonia suffruticosa; buds; cell respiration; cold treatment; dormancy; enzymes; flowering; gene expression regulation; genes; ornamental plants; quantitative polymerase chain reaction; sprouting; starch;     Show all 14 Subjects
Abstract:
... Tree peony is a well-known ornamental plant, and its dormancy is a biological characteristic and a necessary process before bud sprouting and flowering. Carbohydrate metabolism plays an important role in regulating many physiological processes of plants. With the extension of chilling treatment, morphology changes indicated that the percentages of sprouting and blossom increased, and nearly 100 pe ...
DOI:
10.1016/j.scienta.2018.07.022

14. Genomic analyses of unique carbohydrate and phytohormone metabolism in the macroalga Gracilariopsis lemaneiformis (Rhodophyta)

Author:
Sun, Xue; Wu, Jun; Wang, Guangce; Kang, Yani; Ooi, Hong Sain; Shen, Tingting; Wang, Fangjun; Yang, Rui; Xu, Nianjun; Zhao, Xiaodong
Source:
BMC plant biology 2018 v.18 no.1 pp. 94
ISSN:
1471-2229
Subject:
carbohydrate metabolism,   etc   ; Chlorophyta; Chondrus crispus; Gracilariopsis lemaneiformis; agar; auxins; genes; genomics; glycosidases; glycosyltransferases; industry; jasmonic acid; macroalgae; phylogeny; plant hormones; salicylic acid; signal transduction;     Show all 17 Subjects
Abstract:
... BACKGROUND: Red algae are economically valuable for food and in industry. However, their genomic information is limited, and the genomic data of only a few species of red algae have been sequenced and deposited recently. In this study, we annotated a draft genome of the macroalga Gracilariopsis lemaneiformis (Gracilariales, Rhodophyta). RESULTS: The entire 88.98 Mb genome of Gp. lemaneiformis 981 ...
DOI:
10.1186/s12870-018-1309-2

15. Genomic comparison of Clostridium species with the potential of utilizing red algal biomass for biobutanol production

Author:
Sun, Chongran; Zhang, Shuangfei; Xin, Fengxue; Shanmugam, Sabarathinam; Wu, Yi-Rui
Source:
Biotechnology for biofuels 2018 v.11 no.1 pp. 42
ISSN:
1754-6834
Subject:
carbohydrate metabolism,   etc   ; Clostridium acetobutylicum; algae; batch fermentation; biochemical pathways; biofuels; biohydrogen; biomass; fossil fuels; fuel production; galactose; genome; genomics; hydrolysates; prediction; riboflavin; sequence analysis;     Show all 17 Subjects
Abstract:
... BACKGROUND: Sustainable biofuels, which are widely considered as an attractive alternative to fossil fuels, can be generated by utilizing various biomass from the environment. Marine biomass, such as red algal biomass, is regarded as one potential renewable substrate source for biofuels conversion due to its abundance of fermentable sugars (e.g., galactose). Previous studies focused on the enhance ...
DOI:
10.1186/s13068-018-1044-9

16. Small RNA and degradome sequencing used to elucidate the basis of tolerance to salinity and alkalinity in wheat

Author:
Han, Huanan; Wang, Qi; Wei, Lin; Liang, Yu; Dai, Jiulan; Xia, Guangmin; Liu, Shuwei
Source:
BMC plant biology 2018 v.18 no.1 pp. 195
ISSN:
1471-2229
Subject:
carbohydrate metabolism,   etc   ; alkalinity; auxins; breeding; crop yield; cultivars; epigenetics; gene silencing; jasmonic acid; microRNA; plant response; salinity; salt tolerance; soil salinity; stress tolerance; wheat;     Show all 16 Subjects
Abstract:
... BACKGROUND: Soil salinity and/or alkalinity impose a major constraint over crop yield and quality. An understanding of the molecular basis of the plant response to these stresses could inform the breeding of more tolerant varieties. The bread wheat cultivar SR3 exhibits an enhanced level of salinity tolerance, while SR4 is distinguished by its superior tolerance of alkalinity. RESULTS: The small R ...
DOI:
10.1186/s12870-018-1415-1

17. Transcriptomic analyses reveal molecular mechanisms underlying growth heterosis and weakness of rubber tree seedlings

Author:
Yang, Hong; Wang, Xuncheng; Wei, Yongxuan; Deng, Zhi; Liu, Hui; Chen, Jiangshu; Dai, Longjun; Xia, Zhihui; He, Guangming; Li, Dejun
Source:
BMC plant biology 2018 v.18 no.1 pp. 10
ISSN:
1471-2229
Subject:
carbohydrate metabolism,   etc   ; Hevea brasiliensis; biochemical pathways; breeding; gene expression regulation; genes; genotype; heterosis; hybrids; models; overdominance; parents; rubber; seedling growth; seedlings; transcriptome; transcriptomics;     Show all 17 Subjects
Abstract:
... BACKGROUND: Breeding rubber tree seedling with growth heterosis is vital for natural rubber production. It is the prerequisites for effectively utilizing growth heterosis to elucidate its molecular mechanisms, but the molecular mechanisms remain poorly understood in rubber tree. To elucidate seedling growth heterosis, we conducted comparative transcriptomic analyses between the two hybrids and the ...
DOI:
10.1186/s12870-017-1203-3

18. Succession of bacterial community function in cow manure composing

Author:
Wang, Ke; Chu, Chu; Li, Xiangkun; Wang, Wei; Ren, Nanqi
Source:
Bioresource technology 2018 v.267 pp. 63-70
ISSN:
0960-8524
Subject:
carbohydrate metabolism,   etc   ; amino acid metabolism; amino acids; bacterial communities; carboxylic acids; cattle manure; color; composting; genes; lipids; ribosomal RNA; sequence analysis; temperature;     Show all 13 Subjects
Abstract:
... Succession of bacterial community, metabolism function and substrate utilization capacity in 60 days composting of cow manure were analyzed by 16S rRNA pyrosequencing, PICRUSt and Biolog method, respectively. The results showed that the number of bacterial OTUs increased from 176 in raw cow manure to 203 on Day-10, 220 on Day-30 and 313 on Day-60 of the composting, respectively. The PICRUSt analys ...
DOI:
10.1016/j.biortech.2018.06.028

19. Monosodium glutamate induces limited modulation in gut microbiota

Author:
Peng, Qiannan; Huo, Dongxue; Ma, Chenchen; Jiang, Shuaiming; Wang, Linsong; Zhang, Jiachao
Source:
Journal of functional foods 2018 v.49 pp. 493-500
ISSN:
1756-4646
Subject:
carbohydrate metabolism,   etc   ; Collinsella; Megamonas; amino acid metabolism; bacteria; community structure; food additives; humans; intestinal microorganisms; intestines; metagenomics; microbial communities; monosodium glutamate; physiological transport;     Show all 14 Subjects
Abstract:
... The pros and cons of monosodium glutamate (MSG), a common food additive, have been long disputed, whereas the effects of MSG consumption on human intestinal microbiome have not been fully understood. In the present study, metagenomics sequencing was performed to evaluate the effects of MSG on human intestinal microbiota (n = 12) during a four-week experiment. It was observed that MSG consumption d ...
DOI:
10.1016/j.jff.2018.09.015

20. Exogenous Si Alleviation of Autotoxicity in Cucumber (Cucumis sativus L.) Seed Germination is Correlated with Changes in Carbohydrate Metabolism

Author:
Bu, Ruifang; Xiao, Xuemei; Liao, Weibiao; Hu, Yunfei; Li, Jing; Lv, Jian; Wang, Ruidong; Xie, Jianming
Source:
Journal of plant growth regulation 2018 v.37 no.3 pp. 784-793
ISSN:
0721-7595
Subject:
carbohydrate metabolism,   etc   ; Cucumis sativus; beta-amylase; cinnamic acid; cucumbers; enzyme activity; gene expression; plant growth; root exudates; roots; seed germination; seedlings; silicon; starch; sugar content; vigor;     Show all 16 Subjects
Abstract:
... Benzoic and cinnamic acid derivatives such as 3-phenylpropionic acid (PA) are the main autotoxins identified from cucumber root exudates. In this study, we investigated the effects of silicon (Si) supplemented on cucumber seed germination under PA-induced stress. Cucumber bud seedlings were harvested at 0, 4, 8, 12, 24, 36, and 48 h after treatment and assessed for plant growth, amylase activity a ...
DOI:
10.1007/s00344-017-9773-8