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1. β-Carotene and lutein accumulation, and carotenoid biosynthetic gene expression during fruit development and fruit ripening of A genome banana

Author:
Petcharat Netlak; Ratri Boonruangrod; Charles Ampomah-Dwamena; Andrew C. Allan; Wachiraya Imsabai
Source:
Scientia horticulturae 2023 v.307 pp. 111484
ISSN:
0304-4238
Subject:
diploidy,   etc   ; Musa; bananas; biosynthesis; color; cultivars; fruiting; fruits; gene expression; gene expression regulation; genes; intraspecific hybridization; lutein; pulp; triploidy;     Show all 15 Subjects
Abstract:
... Bananas (Musa spp.) are an important source of pro-vitamin A, derived from carotenoids. Some cultivated bananas originated from intra-specific hybridization resulting in genotypes which are diploid (AA) and triploid (AAA) genomes that are the most important bananas for desserts. The accumulation of carotenoids and transcripts of genes related to carotenoid biosynthesis during fruit development and ...
DOI:
10.1016/j.scienta.2022.111484

2. Establishment and characterization of a cell line from the brain of the Japanese flounder (Paralichthys olivaceus) and its application in the study of viral infection

Author:
Zhaodi Sun; Yuqin Ren; Yitong Zhang; Yucong Yang; Guixing Wang; Zhongwei He; Yufeng Liu; Wei Cao; Yufen Wang; Yuanshuai Fu; Jilun Hou
Source:
Aquaculture 2023 v.562 pp. 738825
ISSN:
0044-8486
Subject:
diploidy,   etc   ; Andrias davidianus; Hirame rhabdovirus; Iridovirus; Paralichthys olivaceus; actin; aquaculture; brain; cell lines; chromosome number; chromosomes; fish; gene expression; genes; host-pathogen relationships; interleukin-8; karyotyping; neural stem cells; temperature; transfection; viruses;     Show all 21 Subjects
Abstract:
... Fish cell lines are important tools in many biological studies. Here, we established a new Japanese flounder brain (JFB) cell line from the brain tissue of the Japanese flounder (Paralichthys olivaceus), which was successfully sub-cultured for over 120 passages, and consisted predominantly of fibroblast-like cells. Sequencing of the actin gene confirmed that JFB cells were derived from the Japanes ...
DOI:
10.1016/j.aquaculture.2022.738825

3. Methylome and transcriptome analysis of alters leaf phenotype with autotetraploid in grape

Author:
Xiaodong Xiang; Yukun Gao; Jianghui Cui; Genzeng Ren; Congpei Yin; Jinhua Chang
Source:
Scientia horticulturae 2023 v.307 pp. 111534
ISSN:
0304-4238
Subject:
diploidy,   etc   ; 5-methylcytosine; DNA; Vitis vinifera; anthocyanins; antioxidant activity; autotetraploidy; biosynthesis; bisulfites; cell walls; epigenetics; gene expression; gene expression regulation; genomics; grapes; homeostasis; introns; leaf thickness; leaves; lipid metabolism; methylation; phenotype; photosynthesis; plant hormones; secondary metabolites; transcriptomics;     Show all 26 Subjects
Abstract:
... The doubling of the plant genome causes obvious morphological and physiological changes, and DNA 5-methylcytosine (5mCs) modification is a key epigenetic component that helps neopolyploids overcome challenges and acquire advantages. In the study of autotetraploid grape, we found that leaf thickness, photosynthetic and antioxidant capacity increased and anthocyanin coloring decreased in autotetrapl ...
DOI:
10.1016/j.scienta.2022.111534

4. Optimal Plot Dimensions for Performance Testing of Hybrid Potato in the Field

Author:
Julia E. Stockem; George Korontzis; Stefan E. Wilson; Michiel E. de Vries; Fred A. van Eeuwijk; Paul C. Struik
Source:
Potato research 2022 v.65 no.2 pp. 417-434
ISSN:
0014-3065
Subject:
diploidy,   etc   ; potatoes; research; tetraploidy;     Show all 4 Subjects
Abstract:
... Field trials to evaluate the performance of new varieties are an essential component of potato breeding. Besides the genetic differences, environmental factors can lead to variation in a trial. In variety trials, the observed differences amongst varieties should reflect genetic differences, without a large impact of the random or systematic variation in the field. One way to reduce within-field va ...
DOI:
10.1007/s11540-021-09526-9

5. Crop Cycle Length Determines Optimal Transplanting Date for Seedlings from Hybrid True Potato Seeds

Author:
Luuk C. M. van Dijk; Olivia C. Kacheyo; Michiel E. de Vries; Willemien J. M. Lommen; Paul C. Struik
Source:
Potato research 2022 v.65 no.2 pp. 435-460
ISSN:
0014-3065
Subject:
diploidy,   etc   ; crop failure; frost; potatoes; research; seedlings;     Show all 6 Subjects
Abstract:
... The technology of hybrid breeding in diploid potatoes creates opportunities to design novel and improved cultivation systems based on hybrid true potato seeds. A promising cultivation pathway to produce seed or ware tubers is by transplanting greenhouse-raised seedlings into the field. This study explored the effects of transplanting date and seedling age on tuber yield, using greenhouse-raised se ...
DOI:
10.1007/s11540-021-09524-x

6. Hyperspectral imaging combined with generative adversarial network (GAN)-based data augmentation to identify haploid maize kernels

Author:
Liu Zhang; Qing Nie; Haiyan Ji; Yaqian Wang; Yaoguang Wei; Dong An
Source:
Journal of food composition and analysis 2022 v.106 pp. 104346
ISSN:
0889-1575
Subject:
diploidy,   etc   ; corn; data collection; food composition; haploidy;     Show all 5 Subjects
Abstract:
... The rapid and efficient selection of qualified haploid maize kernels plays an important role in maize breeding. However, considering the rarity of haploid maize kernels, usually only a limited data set can be obtained, which easily leads to poor generalization ability and instability of established classifiers. In this work, hyperspectral imaging (HSI) combined with generative adversarial network ...
DOI:
10.1016/j.jfca.2021.104346

7. Immunoglobulin heavy-chain loci in ancient allotetraploid goldfish

Author:
Linmei Han; Jihong Li; Wen Wang; Kaikun Luo; Mingli Chai; Caixia Xiang; Ziye Luo; Li Ren; Qianhong Gu; Min Tao; Chun Zhang; Jing Wang; Shaojun Liu
Source:
Developmental and comparative immunology 2022 v.135 pp. 104476
ISSN:
0145-305X
Subject:
diploidy,   etc   ; Carassius auratus; allotetraploidy; goldfish; gynogenesis; loci;     Show all 6 Subjects
Abstract:
... As an ancient allotetraploid species, goldfish (Carassius auratus) have two sets of subgenomes. In this study, immunoglobulin heavy-chain (IGH) genes were cloned from the red crucian carp (Carassius auratus red var.), and the corresponding loci were identified in the gynogenetic diploid red crucian carp (GRCC) genome as well as the genomes of three other goldfish strains (Wakin, G-12, and CaTCV-1) ...
DOI:
10.1016/j.dci.2022.104476

8. All Ways Lead to Rome—Meiotic Stabilization Can Take Many Routes in Nascent Polyploid Plants

Author:
Adrián Gonzalo
Source:
Genes 2022 v.13 no.1 pp. -
ISSN:
2073-4425
Subject:
diploidy,   etc   ; allopolyploidy; aneuploidy; coevolution; epigenetics; fractionation; meiosis; mutation;     Show all 8 Subjects
Abstract:
... Newly formed polyploids often show extensive meiotic defects, resulting in aneuploid gametes, and thus reduced fertility. However, while many neopolyploids are meiotically unstable, polyploid lineages that survive in nature are generally stable and fertile; thus, those lineages that survive are those that are able to overcome these challenges. Several genes that promote polyploid stabilization are ...
DOI:
10.3390/genes13010147

9. Genome-Wide Identification of the TIFY Gene Family in Brassiceae and Its Potential Association with Heavy Metal Stress in Rapeseed

Author:
Fujun Sun; Zhiyou Chen; Qianwei Zhang; Yuanyuan Wan; Ran Hu; Shulin Shen; Si Chen; Nengwen Yin; Yunshan Tang; Ying Liang; Kun Lu; Cunmin Qu; Wei Hua; Jiana Li
Source:
Plants 2022 v.11 no.5 pp. -
ISSN:
2223-7747
Subject:
diploidy,   etc   ; allotetraploidy; bioinformatics; genes; heavy metals; phylogeny; rapeseed;     Show all 7 Subjects
Abstract:
... The TIFY gene family plays important roles in various plant biological processes and responses to stress and hormones. The chromosome-level genome of the Brassiceae species has been released, but knowledge concerning the TIFY family is lacking in the Brassiceae species. The current study performed a bioinformatics analysis on the TIFY family comparing three diploid (B. rapa, B. nigra, and B. olera ...
DOI:
10.3390/plants11050667

10. Dynamic Features of Chromosomal Instability during Culture of Induced Pluripotent Stem Cells

Author:
Casey O. DuBose; John R. Daum; Christopher L. Sansam; Gary J. Gorbsky
Source:
Genes 2022 v.13 no.7 pp. -
ISSN:
2073-4425
Subject:
diploidy,   etc   ; chromosomal instability; chromosomes; genes; human population; medicine;     Show all 6 Subjects
Abstract:
... Induced pluripotent stem cells (iPSCs) hold great potential for regenerative medicine. By reprogramming a patient′s own cells, immunological rejection can be avoided during transplantation. For expansion and gene editing, iPSCs are grown in artificial culture for extended times. Culture affords potential danger for the accumulation of genetic aberrations. To study these, two induced pluripotent st ...
DOI:
10.3390/genes13071157

11. 1012. SENECIO SQUALIDUS: Compositae

Author:
Nicholas Hind; Christabel King
Source:
Curtis's botanical magazine 2022 v.39 no.1 pp. 113-134
ISSN:
1355-4905
Subject:
diploidy,   etc   ; Senecio squalidus; allozymes; hybrid species; British Isles; Sicily;     Show all 6 Subjects
Abstract:
... The widespread Senecio squalidus L. (Compositae: Senecioneae: Senecioninae), a diploid hybrid species with strong self‐incompatibility, that originated in the British Isles within the last 300 years, is described and illustrated. The origins of this species are briefly outlined. The history of the spread of this plant in the British Isles, and the presence of several natural hybrids is commented o ...
DOI:
10.1111/curt.12434

12. Zygote Activation: The Start of the New Generation in Angiosperms

Author:
Yun Ling Xie; Wei Deng; Hui Qiao Tian; Xue Yi Zhu
Source:
Critical reviews in plant sciences 2022 v.41 no.3 pp. 177-189
ISSN:
1549-7836
Subject:
diploidy,   etc   ; cell division; eggs; embryogenesis; genomics; haploidy; spermatozoa; zygote;     Show all 8 Subjects
Abstract:
... In angiosperms, after the egg fuses with the sperm, many structural, physiological, and molecular biological changes occur in the fertilized egg. All of these changes facilitate the conversion of the haploid egg into the diploid zygote, a process known as the maternal-to-zygotic transition (MZT). In the egg, fertilized egg, and zygote, changes occur at each stage under the control of exact spatio- ...
DOI:
10.1080/07352689.2022.2082160

13. Estimating the Genetic Parameters of Flowering Time-Related Traits in a Miscanthus sinensis Population Tested with a Staggered-Start Design

Author:
Wei Hou; Raphaël Raverdy; Emilie Mignot; Stéphanie Arnoult; Catherine Giauffret; Maryse Brancourt-Hulmel
Source:
BioEnergy research 2022 v.15 no.2 pp. 703-717
ISSN:
1939-1234
Subject:
diploidy,   etc   ; Miscanthus sinensis; bioenergy; genotype; heritability; panicles; research; soil; variance;     Show all 9 Subjects
Abstract:
... The cultivation of Miscanthus has attracted growing interest despite its yield instability. Therefore, understanding what causes such instability is of primary interest for breeding. Our objectives were to estimate the genetic parameters—genetic variance and genetic heritability—and genetic correlations for flowering time-related traits in a biparental Miscanthus sinensis diploid population, and d ...
DOI:
10.1007/s12155-021-10328-7

14. Features of the Genome Correlated with the Annuality of Plant

Author:
N. F. Lunkova; V. B. Ivanov
Source:
Russian journal of plant physiology 2022 v.69 no.5 pp. 87
ISSN:
1021-4437
Subject:
diploidy,   etc   ; DNA; Liliopsida; Magnoliopsida; annuals; genome; genomics; polyploidy; Great Britain;     Show all 9 Subjects
Abstract:
... The paper analyzes the latest data on 5038 species of herbs presented by the Kew Botanic Gardens (Great Britain). The following genomic parameters were investigated: the dependence of annual plant ratio as the percentage of total number of annual and perennial species on the holoploid DNA content (C-value), ploidy and number of chromosomes. Previously, it was shown that C-value in annuals is lower ...
DOI:
10.1134/S1021443722050132

15. Physical Mapping of 18S rRNA Gene in Green Mussel Perna viridis – An Indication of Higher Major rRNA Gene Clusters

Author:
A. N. Muhammed Zafar Iqbal; Mohd Sajid Khan; M. A. Navalgund; U. Goswami
Source:
Russian journal of marine biology 2022 v.48 no.3 pp. 195-201
ISSN:
1063-0740
Subject:
diploidy,   etc   ; Mytilus; Perna viridis; chromosomes; fluorescence; interphase; metaphase; mussels; silver;     Show all 9 Subjects
Abstract:
... The family Mytilidae generally shows a genus-specific diploid number (2n) of chromosomes; however, one species from each genus, with the exception of Mytilus, is known to have a variable diploid number. Perna viridis is a cytogenetically significant species because it has a diploid chromosome (2n) number of 30, whereas the rest of species of genera Perna and Mytilus have a diploid number of 28. In ...
DOI:
10.1134/S1063074022030038

16. Single-cell diploid Hi-C reveals the role of spatial aggregations in complex rearrangements and KMT2A fusions in leukemia

Author:
Zhihao Xing; Huirong Mai; Xiaorong Liu; Xiaoying Fu; Xingliang Zhang; Lichun Xie; Yunsheng Chen; Adam Shlien; Feiqiu Wen
Source:
Genome biology 2022 v.23 no.1 pp. 173
ISSN:
1474-760X
Subject:
diploidy,   etc   ; DNA; data collection; genes; leukemia; transcription (genetics); transcription factors;     Show all 7 Subjects
Abstract:
... BACKGROUND: Simple translocations and complex rearrangements are formed through illegitimate ligations of double-strand breaks of fusion partners and lead to generation of oncogenic fusion genes that affect cellular function. The contact first hypothesis states that fusion partners tend to colocalize prior to fusion in normal cells. Here we test this hypothesis at the single-cell level and explore ...
DOI:
10.1186/s13059-022-02740-9

17. CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data

Author:
Alexey Kozlov; Joao M. Alves; Alexandros Stamatakis; David Posada
Source:
Genome biology 2022 v.23 no.1 pp. 37
ISSN:
1474-760X
Subject:
diploidy,   etc   ; data collection; genome; genomics; genotype; models; phylogeny; statistical analysis;     Show all 8 Subjects
Abstract:
... We introduce CellPhy, a maximum likelihood framework for inferring phylogenetic trees from somatic single-cell single-nucleotide variants. CellPhy leverages a finite-site Markov genotype model with 16 diploid states and considers amplification error and allelic dropout. We implement CellPhy into RAxML-NG, a widely used phylogenetic inference package that provides statistical confidence measurement ...
DOI:
10.1186/s13059-021-02583-w

18. Genomic constitution, allopolyploidy, and evolutionary proposal for Cynodon Rich. based on GISH

Author:
Ana Luisa Arantes Chaves; Pedro Henrique Mendes Carvalho; Marco Tulio Mendes Ferreira; Flávio Rodrigo Gandolfi Benites; Vânia Helena Techio
Source:
Protoplasma 2022 v.259 no.4 pp. 999-1011
ISSN:
0033-183X
Subject:
diploidy,   etc   ; Cynodon dactylon; allotetraploidy; chromosome number; genomics; hybridization; phylogeny; pollen;     Show all 8 Subjects
Abstract:
... Polyploidy is the main mechanism for chromosome number variation in Cynodon. Taxonomic boundaries are difficult to define and, although phylogenetic studies indicate that some species are closely related, the degree of genomic similarity remains unknown. Furthermore, the Cynodon species classification as auto or allopolyploids is still controversial. Thus, this study aimed to investigate the genom ...
DOI:
10.1007/s00709-021-01716-z

19. Identification of a major QTL for root thickness in diploid wild sweetpotato (Ipomoea trifida) using QTL-seq

Author:
Keisuke Suematsu; Masaru Tanaka; Sachiko Isobe
Source:
Plant production science 2022 v.25 no.1 pp. 120-129
ISSN:
1349-1008
Subject:
diploidy,   etc   ; DNA; Ipomoea; backcrossing; evolution; genotyping; quantitative traits; sweet potatoes;     Show all 8 Subjects
Abstract:
... Ipomoea trifida, the closest relative of sweetpotato, does not generally form storage roots, but some lines develop thick roots similar to the storage roots of the sweetpotato. Revealing the molecular mechanism of thick root development in I. trifida would help us understand the evolution of storage roots in the sweetpotato. In this study, we conducted a mapping method for quantitative trait loci ...
DOI:
10.1080/1343943X.2021.1927766

20. Cytotaxonomic investigations on species of genus Narcissus (Amaryllidaceae) from Algeria

Author:
Naila Chahinez Boukhebache; Nabila Amirouche; Rachid Amirouche
Source:
Comparative cytogenetics 2022 v.16 no.1 pp. 55-76
ISSN:
1993-078X
Subject:
diploidy,   etc   ; asymmetry; chromosomes; cytotypes; geographical distribution; hexaploidy; karyotyping; morphs; Algeria;     Show all 9 Subjects
Abstract:
... AbstractThis paper provides new cytotaxonomic data on the genus Narcissus Linnaeus, 1753, in Algeria. Populations of seven taxa, N. tazetta Linnaeus, 1753, N. pachybolbus Durieu, 1847, N. papyraceus Ker Gawler, 1806, N. elegans (Haworth) Spach, 1846, N. serotinus sensu lato Linnaeus, 1753, including N. obsoletus (Haworth) Steudel, 1841, and N. cantabricus De Candolle, 1815, were karyologically in ...
DOI:
10.3897/compcytogen.v16.i1.78852