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You searched for: Subject "genetic markers" Remove constraint Subject: "genetic markers"
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1. Analytical and numerical comparisons of two methods of estimation of additive × additive × additive interaction of QTL effects

Author:
Adrian Cyplik; Jan Bocianowski
Source:
Journal of applied genetics 2022 v.63 no.2 pp. 213-221
ISSN:
1234-1983
Subject:
genetic markers,   etc   ; barley; doubled haploids; phenotype;     Show all 4 Subjects
Abstract:
... This paper presents the analytical and numerical comparison of two methods of estimation of additive × additive × additive (aaa) interaction of QTL effects. The first method takes into account only the plant phenotype, while in the second we also included genotypic information from molecular marker observation. Analysis was made on 150 doubled haploid (DH) lines of barley derived from cross Stepto ...
DOI:
10.1007/s13353-021-00676-7

2. Applications of Quantitative Genetics and Statistical Analyses in Sugarcane Breeding

Author:
Jean-Yves Hoarau; Thomas Dumont; Xianming Wei; Philip Jackson; Angélique D’Hont
Source:
Sugar tech 2022 v.24 no.1 pp. 320-340
ISSN:
0972-1525
Subject:
genetic markers,   etc   ; genomics; humans; profitability; sugarcane; sugars;     Show all 6 Subjects
Abstract:
... Sugarcane breeding programs aim to deliver new high-yielding varieties, resistant to diseases and pests, which contribute to profitability and sustainability of cane industries. These programs generally mobilize significant experimental, technological and human resources on long-term basis. Their efficiency in terms of genetic gains per unit of cost and time and their ability to release new variet ...
DOI:
10.1007/s12355-021-01012-3

3. Differential richness inference for 16S rRNA marker gene surveys

Author:
M. Senthil Kumar; Eric V. Slud; Christine Hehnly; Lijun Zhang; James Broach; Rafael A. Irizarry; Steven J. Schiff; Joseph N. Paulson
Source:
Genome biology 2022 v.23 no.1 pp. 166
ISSN:
1474-760X
Subject:
genetic markers,   etc   ; environmental health; genome; inflation; microbiome; surveys;     Show all 6 Subjects
Abstract:
... BACKGROUND: Individual and environmental health outcomes are frequently linked to changes in the diversity of associated microbial communities. Thus, deriving health indicators based on microbiome diversity measures is essential. While microbiome data generated using high-throughput 16S rRNA marker gene surveys are appealing for this purpose, 16S surveys also generate a plethora of spurious microb ...
DOI:
10.1186/s13059-022-02722-x

4. Establishing the prevalence and relative rates of 1,4-dioxane biodegradation in groundwater to improve remedy evaluations

Author:
David T. Adamson; John T. Wilson; David L. Freedman; Angel Alejandro Ramos-García; Carmen Lebrón; Anthony Danko
Source:
Journal of hazardous materials 2022 v.424 pp. 127736
ISSN:
0304-3894
Subject:
genetic markers,   etc   ; biodegradation; groundwater; isotope fractionation; models; stable isotopes;     Show all 6 Subjects
Abstract:
... Options for remediating 1,4-dioxane at groundwater sites are limited due to the physical-chemical properties of this compound. The relevance of natural attenuation processes for 1,4-dioxane was investigated through data from field, lab, and modeling efforts. The objectives were to use multiple lines of evidence for 1,4-dioxane biodegradation to understand the prevalence of this activity and evalua ...
DOI:
10.1016/j.jhazmat.2021.127736

5. Identification of sex linked molecular markers in spine gourd (Momordica dioica Roxb.)

Author:
Gajala Ameen; Jitendra Kumar Tiwari; Ved Prakash; Vivek Kumar Sandilya; B.K. Das
Source:
Indian journal of genetics & plant breeding 2022 v.82 no.1 pp. 113-115
ISSN:
0975-6906
Subject:
genetic markers,   etc   ; Momordica dioica; cucumbers; dioecy; females; genes; males;     Show all 7 Subjects
Abstract:
... The major drawback of a dioecious spine gourd (Momordica dioica Roxb.) is distinguishing whether the plant is male or female at an earlier development stage. An investigation was aimed to eliminate aforesaid limitation by identifying and validating sex linked molecular marker. Twenty six male and female genotypes of each sex were screened with 12 specific SSR primers. Only two SSR primers, MdSSR 5 ...
DOI:
10.31742/IJGPB.82.1.17

6. A deep matrix factorization based approach for single-cell RNA-seq data clustering

Author:
Zhenlan Liang; Ruiqing Zheng; Siqi Chen; Xuhua Yan; Min Li
Source:
Methods 2022 v.205 pp. 114-122
ISSN:
1046-2023
Subject:
genetic markers,   etc   ; data collection; gene expression; genes; sequence analysis;     Show all 5 Subjects
Abstract:
... The rapid development of single-cell sequencing technologies makes it possible to analyze cellular heterogeneity at the single-cell level. Cell clustering is one of the most fundamental and common steps in the heterogeneity analysis. However, due to the high noise level, high dimensionality and high sparsity, accurate cell clustering is still challengeable. Here, we present DeepCI, a new clusterin ...
DOI:
10.1016/j.ymeth.2022.06.010

7. CCL2 rs1024611Gene Polymorphism in Philadelphia-Negative Myeloproliferative Neoplasms

Author:
Hossam Hodeib; Dina Abd EL Hai; Mohamed A Tawfik; Alzahraa A. Allam; Amal Selim; Abdallah Ahmed Elsawy; Amira Youssef
Source:
Genes 2022 v.13 no.3 pp. -
ISSN:
2073-4425
Subject:
genetic markers,   etc   ; fibrosis; genes; genotype; lymphoma; patients; risk factors;     Show all 7 Subjects
Abstract:
... Introduction: The onset of the Philadelphia chromosome-negative myeloproliferative neoplasms (MPNs) is caused by acquired somatic mutations in target myeloid genes “driver mutations”. The CCL2 gene is overexpressed by non-Hodgkin lymphomas and multiple solid tumors. Aim of the study: to evaluate the possible association of CCL2 rs1024611 SNP and its expression level and the risk of developing Phil ...
DOI:
10.3390/genes13030492

8. Phylogenetic analysis confirms the taxonomic placement of the marine flagellate Hermesinum adriaticum (Thecofilosea, Cercozoa, Rhizaria)

Author:
Kenneth Dumack; Dimitar Gerdzhikov; Daniela Klisarova
Source:
journal of eukaryotic microbiology 2022 v.69 no.3 pp. e12905
ISSN:
1066-5234
Subject:
genetic markers,   etc   ; Dictyochophyceae; Ebria; Ebriida; microalgae; microbiology; nucleotide sequences; phylogeny;     Show all 8 Subjects
Abstract:
... Hermesinum adriaticum is a rare marine and brackish flagellate that is of considerable interest due to its markable and fossilizable siliceous skeleton. Based on this skeleton, Hermesinum was initially considered a microalga of the Dictyochophyceae (Ochrophyta, Stramenopiles). Later on, it was assigned to the Ebriida due to its similarity to Ebria tripartita. The taxonomic assignment of the Ebriid ...
DOI:
10.1111/jeu.12905

9. Shifts of the new functional marker gene (pahE) of polycyclic aromatic hydrocarbons (PAHs) degrading bacterial population and its relationship with PAHs biodegradation

Author:
Chengyue Liang; Quanhui Ye; Yong Huang; Yun Wang; Zuotao Zhang; Hui Wang
Source:
Journal of hazardous materials 2022 v.437 pp. 129305
ISSN:
0304-3894
Subject:
genetic markers,   etc   ; bacterial communities; biodegradation; bioremediation; genes; mangrove sediments; metagenomics;     Show all 7 Subjects
Abstract:
... Identification of polycyclic aromatic hydrocarbons (PAHs) degrading bacterial populations and understanding their responses to PAHs are crucial for the designing of appropriate bioremediation strategies. In this study, the responses of PAHs-degrading bacterial populations to different PAHs were studied in terms of the compositions and abundance variations of their new functional marker gene (pahE) ...
DOI:
10.1016/j.jhazmat.2022.129305

10. Waxy allele diversity in waxy maize landraces of Yunnan Province, China

Author:
WU Xiao-yang; LONG Wen-jie; CHEN Dan; ZHOU Guo-yan; DU Juan; WU Shao-yun; CAI Qing
Source:
Journal of integrative agriculture 2022 v.21 no.2 pp. 578-585
ISSN:
2095-3119
Subject:
genetic markers,   etc   ; agriculture; allelic variation; landraces; mutation; transposons; waxy corn; China;     Show all 8 Subjects
Abstract:
... Waxy maize is one of the main fresh-eating maize types, and a mutation of the waxy gene causes the waxy character of maize grains. China is rich in waxy maize landraces, and Yunnan and its surrounding areas, are the place of origin and genetic diversity center of Chinese waxy maize. The six known waxy alleles of Chinese waxy maize are wx-D7, wx-D10, wx-Cin4, wx-124, wx-Reina, and wx-Xuanwei. The m ...
DOI:
10.1016/S2095-3119(20)63471-2

11. Silencing GhIAA43, a member of cotton AUX/IAA genes, enhances wilt resistance via activation of salicylic acid-mediated defenses

Author:
Yaxin Su; Guilin Wang; Zhongyi Huang; LiLi Hu; Tao Fu; Xinyu Wang
Source:
Plant science 2022 v.314 pp. 111126
ISSN:
0168-9452
Subject:
genetic markers,   etc   ; Arabidopsis; Pseudomonas syringae; Verticillium dahliae; cotton; protein metabolism; sequence analysis;     Show all 7 Subjects
Abstract:
... Auxin-mediated degradation of Aux/IAA proteins is a crucial step in auxin signaling. Recent researches indicate that Aux/IAA members also play a role in biotic and abiotic stresses. For example, Pseudomonas syringae infection causes Arabidopsis Aux/IAA protein (AXR2, AXR3) turnover. Here, by analyzing RNA-seq data we found that several cotton Aux/IAA genes are responsive to Verticillium dahliae in ...
DOI:
10.1016/j.plantsci.2021.111126

12. Easier than it looks: Notes on the taxonomy of Typha L. (Typhaceae) in East Europe

Author:
Polina A. Volkova; Alexander A. Bobrov
Source:
Aquatic botany 2022 v.176 pp. 103453
ISSN:
0304-3770
Subject:
genetic markers,   etc   ; chloroplast DNA; hybrids; intergenic DNA; microsatellite repeats; new taxa; Europe;     Show all 7 Subjects
Abstract:
... High morphological variation of Typha L. species (Typhaceae) inspires some authors to describe new taxa. We aim to test genetic distinctiveness of some taxa reported in East Europe on morphological basis to verify their taxonomical status. We use sequences of intergenic spacer rpl32-trnL of cpDNA that was shown to be a reliable molecular marker in non-hybrid Typha species. We found that T. caspica ...
DOI:
10.1016/j.aquabot.2021.103453

13. Genetic characterization evaluation of a novel multiple system containing 57 deletion/insertion polymorphic loci with short amplicons in Hunan Han population and its intercontinental populations analyses

Author:
Yating Fang; Congying Zhao; Xiaoye Jin; Qiong Lan; Jiangwei Lan; Tong Xie; Bofeng Zhu
Source:
Gene 2022 v.809 pp. 146006
ISSN:
0378-1119
Subject:
genetic markers,   etc   ; DNA; capillary electrophoresis; forensic sciences; gene frequency; genes; paternity; China;     Show all 8 Subjects
Abstract:
... Deletion/insertion polymorphism (DIP) is a promising genetic marker of DNA length polymorphism. However, there are relatively few studies on the exploration of DIP genetic polymorphisms and investigation of population genetic data at present, which limits its application in forensic identification. In this study, the genetic polymorphisms of 57 autosomal DIPs and forensic application evaluations o ...
DOI:
10.1016/j.gene.2021.146006

14. Genetic diversity and relationship analyses of mango (Mangifera indica L.) germplasm resources with ISSR, SRAP, CBDP and CEAP markers

Author:
Mei-yan Chen; Xin-hua He; Yi-li Zhang; Ting-ting Lu; Wei-qiao-chu He; Ji-hong Yang; Xing Huang; Jia-wei Zhu; Hai-xia Yu; Cong Luo
Source:
Scientia horticulturae 2022 v.301 pp. 111146
ISSN:
0304-4238
Subject:
genetic markers,   etc   ; Mangifera indica; cluster analysis; genetic variation; germplasm; mangoes; microsatellite repeats;     Show all 7 Subjects
Abstract:
... Forty-eight mango accessions were compared for genetic diversity and relationships based on four molecular marker assays, namely, inter-simple sequence repeat (ISSR), sequence-related amplified polymorphism (SRAP), CAAT-box derived polymorphism (CBDP), and cis-element amplified polymorphism (CEAP). Comparative analyses of the marker assays based on Nei's genetic diversity (H), Shannon's informatio ...
DOI:
10.1016/j.scienta.2022.111146

15. HTPdb and HTPtools: Exploiting maize haplotype-tag polymorphisms for germplasm resource analyses and genomics-informed breeding

Author:
Yikun Zhao; Hongli Tian; Chunhui Li; Hongmei Yi; Yunlong Zhang; Xiaohui Li; Han Zhao; Yongxue Huo; Rui Wang; Dingming Kang; Yuncai Lu; Zhihao Liu; Ziyue Liang; Liwen Xu; Yang Yang; Ling Zhou; Tianyu Wang; Jiuran Zhao; Fengge Wang
Source:
Plant communications 2022 v.3 no.4 pp. 100331
ISSN:
2590-3462
Subject:
genetic markers,   etc   ; algorithms; backcrossing; corn; databases; genotype; genotyping; germplasm; heterosis; pedigree; prediction; probability;     Show all 12 Subjects
Abstract:
... Along with rapid advances in high-throughput-sequencing technology, the development and application of molecular markers has been critical for the progress that has been made in crop breeding and genetic research. Desirable molecular markers should be able to rapidly genotype tens of thousands of breeding accessions with tens to hundreds of markers. In this study, we developed a multiplex molecula ...
DOI:
10.1016/j.xplc.2022.100331

16. Methane and carbon dioxide cycles in lakes of the King George Island, maritime Antarctica

Author:
Frederic Thalasso; Armando Sepulveda-Jauregui; Léa Cabrol; Céline Lavergne; Nazlı Olgun; Karla Martinez-Cruz; Polette Aguilar-Muñoz; Natalia Calle; Andrés Mansilla; María Soledad Astorga-España
Source:
Science of the total environment 2022 v.848 pp. 157485
ISSN:
0048-9697
Subject:
genetic markers,   etc   ; carbon dioxide; environment; freshwater; greenhouse gases; lakes; methane; methanogens; methanotrophs; Antarctica;     Show all 10 Subjects
Abstract:
... Freshwater ecosystems are important contributors to the global greenhouse gas budget and a comprehensive assessment of their role in the context of global warming is essential. Despite many reports on freshwater ecosystems, relatively little attention has been given so far to those located in the southern hemisphere and our current knowledge is particularly poor regarding the methane cycle in non- ...
DOI:
10.1016/j.scitotenv.2022.157485

17. Cross-species transmission of an emerging porcine circovirus (PCV4): First molecular detection and retrospective investigation in dairy cows

Author:
Tong Xu; Xi-Meng Chen; Yin Fu; Yi Ai; Dong-Mei Wang; Zhan-Yong Wei; Xin-Sheng Li; Lan-Lan Zheng; Hong-Ying Chen
Source:
Veterinary microbiology 2022 v.273 pp. 109528
ISSN:
0378-1135
Subject:
genetic markers,   etc   ; Porcine circovirus; amino acids; genetic variation; genome; genotype; microbiology; phylogeny; China;     Show all 9 Subjects
Abstract:
... Porcine circovirus 4 (PCV4), a novel porcine circovirus identified in pigs, has recently been proved to be pathogenic to piglets. However, little is known about its cross-species transmission, and demonstration of PCV4 in dairy cows is lacking. To explore whether the PCV4 genome exists in dairy cows, 1170 fecal samples were collected from dairy farms in 7 cities in Henan Province of China during 2 ...
DOI:
10.1016/j.vetmic.2022.109528

18. Development and Application of a Cultivar-Specific Sequence-Characterized Amplified Region (SCAR) Marker for the Detection of Chrysanthemum morifolium Ramat. ‘Daboju’

Author:
Yuchen Cai; Yadi Gao; Zhenhao Zhang; Huijie Liu; Yifan Wang; Yuxin Ma; Yixin Li; Shangguo Feng; Huizhong Wang
Source:
Plants 2022 v.11 no.5 pp. -
ISSN:
2223-7747
Subject:
genetic markers,   etc   ; Chrysanthemum morifolium; DNA; DNA fragmentation; cultivars; detection limit; germplasm; oligodeoxyribonucleotides; vision;     Show all 9 Subjects
Abstract:
... Chrysanthemummorifolium Ramat. ‘Daboju’ is a C. morifolium cultivar with important ornamental and medicinal values, and is often used in the treatment of colds, blurred vision, dizziness, and itchy skin. As the morphological characteristics of C. morifolium ‘Daboju’ are very similar to those of other C. morifolium cultivars, they are often confused in practice. However, the medicinal value and pra ...
DOI:
10.3390/plants11050604

19. Genetic Biomarkers of Metabolic Detoxification for Personalized Lifestyle Medicine

Author:
Lucia Aronica; Jose M. Ordovas; Andrey Volkov; Joseph J. Lamb; Peter Michael Stone; Deanna Minich; Michelle Leary; Monique Class; Dina Metti; Ilona A. Larson; Nikhat Contractor; Brent Eck; Jeffrey S. Bland
Source:
Nutrients 2022 v.14 no.4 pp. -
ISSN:
2072-6643
Subject:
genetic markers,   etc   ; biomarkers; clinical trials; genetic variation; humans; lifestyle; medicine; metabolic detoxification; toxicity;     Show all 9 Subjects
Abstract:
... Metabolic detoxification (detox)—or biotransformation—is a physiological function that removes toxic substances from our body. Genetic variability and dietary factors may affect the function of detox enzymes, thus impacting the body’s sensitivity to toxic substances of endogenous and exogenous origin. From a genetic perspective, most of the current knowledge relies on observational studies in huma ...
DOI:
10.3390/nu14040768

20. Genetic diversity of Lansium parasiticum (Osbeck) K. C. Sahni & Bennet accessions based on vegetative morphological characters and simple sequence repeat markers

Author:
Darda Efendi; Hevia Purnama Sari; Willy Bayuardi Suwarno; Deden Derajat Matra
Source:
Genetic resources and crop evolution 2022 v.69 no.4 pp. 1707-1716
ISSN:
0925-9864
Subject:
genetic markers,   etc   ; Cervus; Lansium domesticum; common names; evolution; fruits; genetic variation; microsatellite repeats;     Show all 8 Subjects
Abstract:
... Morphological characters and SSR (Simple Sequence Repeat) molecular marker information were combined to study the genetic diversity of Lansium domesticum Corrêa. The research aimed to study the genetic diversity of accessions of L. parasiticum (duku, langsat, kokosan) accessions based on morphological characters and SSR markers. The field research was conducted at the Bogor Botanical Gardens, Meka ...
DOI:
10.1007/s10722-021-01336-9