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1. Correction to: Association of CXCR2 genotype variations with HCV clearance in a Chinese population

Author:
Zang, Feng; Yue, Ming; Zhuo, Lingyun; Wu, Jingjing; Liu, Mei; Yao, Yinan; Wang, Jie; Feng, Yue; Xia, Xueshan; Huang, Peng; Yu, Rongbin
Source:
Archives of virology 2019 v.164 no.3 pp. 947
ISSN:
0304-8608
Subject:
genotype,   etc   ; CXCR2 receptor; funding;     Show all 3 Subjects
Abstract:
... Unfortunately, the funding statement was published with error in original publication and is corrected here. ...
DOI:
10.1007/s00705-018-4111-4

2. Evolution in the light of fitness landscape theory

Author:
Fragata, Inês; Blanckaert, Alexandre; Dias Louro, Marco António; Liberles, David A.; Bank, Claudia
Source:
Trends in ecology & evolution 2019 v.34 no.1 pp. 69-82
ISSN:
0169-5347
Subject:
genotype,   etc   ; evolution; models; molecular biology; phenotype;     Show all 5 Subjects
Abstract:
... By formalizing the relationship between genotype or phenotype and fitness, fitness landscapes harbor information on molecular and evolutionary constraints. The shape of the fitness landscape determines the potential for adaptation and speciation, as well as our ability to predict evolution. Consequently, fitness landscape theory has been invoked across the natural sciences and across multiple leve ...
DOI:
10.1016/j.tree.2018.10.009

3. Inferring the potentially complex genetic architectures of adaptation, sexual dimorphism and genotype by environment interactions by partitioning of mean phenotypes

Author:
Armstrong, Andrew; Anderson, Nathan W.; Blackmon, Heath
Source:
Journal of evolutionary biology 2019 v.32 no.4 pp. 369-379
ISSN:
1010-061X
Subject:
genotype; genotype-environment interaction,   etc   ; adaptive radiation; backcrossing; environmental factors; gender differences; genes; phenotype; rearing; sexual dimorphism;     Show all 10 Subjects
Abstract:
... Genetic architecture fundamentally affects the way that traits evolve. However, the mapping of genotype to phenotype includes complex interactions with the environment or even the sex of an organism that can modulate the expressed phenotype. Line‐cross analysis is a powerful quantitative genetics method to infer genetic architecture by analysing the mean phenotype value of two diverged strains and ...
DOI:
10.1111/jeb.13421

4. Impact of Environment and Genotype‐by‐Environment Interaction on Functional Properties of Amylose‐Free and Wildtype Cassava Starches

Author:
Karlström, Amanda; Belalcazar, John; Sánchez, Teresa; Lenis, Jorge I.; Moreno, John L.; Pizarro, Mónica; Ricci, Julien; Dufour, Dominique; Tran, Thierry; Ceballos, Hernán
Source:
DieStärke = 2019 v.71 no.1-2 pp. e1700278
ISSN:
0038-9056
Subject:
genotype; genotype-environment interaction,   etc   ; altitude; analysis of variance; cassava; clones; functional properties; starch granules; viscosity;     Show all 9 Subjects
Abstract:
... Ten and thirty cassava genotypes producing wildtype and amylose‐free (waxy) starch respectively, are grown at low (LA) and intermediate (IA) altitudes (<213 and >900 m above sea level (m.a.s.l.) respectively). The functional properties of the starch from these materials are analyzed. The relative importance of environment, clones (within starch type) and genotype‐by‐environment interaction (GxE) i ...
DOI:
10.1002/star.201700278

5. Yield performances of Asiatic pennyworth accessions evaluated in multi environment trials in West Java, Indonesia

Author:
Bermawie, N.; Purwiyanti, S.; Syakir, M.
Source:
Acta horticulturae 2018 no.1205 pp. 811-816
ISSN:
0567-7572
Subject:
genotype; genotype-environment interaction,   etc   ; environmental factors; Indonesia;     Show all 4 Subjects
Abstract:
... Yield and asiaticoside contents may be influenced by genotype and environmental condition. Approaches to improve the herbal production with desired asiaticoside contents have been done by selecting potential accessions and grown at several agro ecological locations. The objectives of the study were to evaluate herbal yield and contents of asiaticoside stability of five accessions in six different ...
DOI:
10.17660/ActaHortic.2018.1205.102

6. Correction to: Fraction of high-grade cervical intraepithelial lesions attributable to genotypes targeted by a nonavalent HPV vaccine in Galicia, Spain

Author:
Perez, S.; Iñarrea, A.; Pérez-Tanoira, R.; Gil, M.; López-Díez, E.; Valenzuela, O.; Porto, M.; Alberte-Lista, L.; Peteiro-Cancelo, M. A.; Treinta, A.; Carballo, R.; Reboredo, M. C.; Alvarez-Argüelles, M. E.; Purriños, M. J.
Source:
Virology journal 2018 v.15 no.1 pp. 41
ISSN:
1743-422X
Subject:
genotype,   etc   ; vaccines; Spain;     Show all 3 Subjects
Abstract:
... After publication of the article [1], it was brought to our attention that the author E. López-Díez is missing their second affiliation. The author would also like to indicate an affiliation to “Universidade de Vigo, Pontevedra, Spain”. ...
DOI:
10.1186/s12985-018-0953-3
PubMed:
29510723
PubMed Central:
PMC5840815

7. Human-Mediated Dispersal and the Rewiring of Spatial Networks

Author:
Bullock, James M.; Bonte, Dries; Pufal, Gesine; da Silva Carvalho, Carolina; Chapman, Daniel S.; García, Cristina; García, Daniel; Matthysen, Erik; Delgado, Maria Mar
Source:
Trends in ecology & evolution 2018 v.33 no.12 pp. 958-970
ISSN:
0169-5347
Subject:
genotype,   etc   ; landscapes; prediction;     Show all 3 Subjects
Abstract:
... Humans fundamentally affect dispersal, directly by transporting individuals and indirectly by altering landscapes and natural vectors. This human-mediated dispersal (HMD) modifies long-distance dispersal, changes dispersal paths, and overall benefits certain species or genotypes while disadvantaging others. HMD is leading to radical changes in the structure and functioning of spatial networks, whi ...
DOI:
10.1016/j.tree.2018.09.008

8. Raman spectroscopy for the differentiation of Arabic coffee genotypes

Author:
Figueiredo, Luisa Pereira; Borém, Flávio Meira; Almeida, Mariana Ramos; Oliveira, Luiz Fernando Cappa de; Alves, Ana Paula de Carvalho; Santos, Cláudia Mendes dos; Rios, Paula Almeida
Source:
Food chemistry 2019 v.288 pp. 262-267
ISSN:
0308-8146
Subject:
genotype,   etc   ; Raman spectroscopy; chemometrics; coffee beans; fatty acids; models; spectrometers;     Show all 7 Subjects
Abstract:
... The objective of this study was to evaluate the ability of Raman spectroscopy to identify the genotype of green coffee beans. Four genotypes of Arabic coffee: one Mundo Novo line (G1) and three Bourbon lines (G2, G3, and G4). The harvest was selected using a wet processing method. Raman spectra of the samples were obtained using a FT-Raman RFS/100 spectrometer in the spectral range of 3500–400 cm− ...
DOI:
10.1016/j.foodchem.2019.02.093

9. Eucalyptus subgenus Eucalyptus (Myrtaceae) trees are abundant sources of medicinal pinocembrin and related methylated flavanones

Author:
Goodger, Jason Q.D.; Senaratne, Samiddhi L.; van der Peet, Phillip; Browning, Rhys; Williams, Spencer J.; Nicolle, Dean; Woodrow, Ian E.
Source:
Industrial crops and products 2019 v.131 pp. 166-172
ISSN:
0926-6690
Subject:
genotype,   etc   ; Eucalyptus oreades; coppicing; flavanones; methylation; ontogeny; plantations; saplings;     Show all 8 Subjects
Abstract:
... Plant-derived flavanones such as pinocembrin and related methylated forms are of interest for their potential medicinal use. Commercial sources of these compounds are limited, but some trees in genus Eucalyptus subgenus Eucalyptus (family Myrtaceae) show promise due to their high foliar flavanone content and growth rate, particularly when grown in coppice cultivation. As a first step to developing ...
DOI:
10.1016/j.indcrop.2019.01.050

10. Comparative analysis of replicative properties of phylogenetically divergent, Argentinean BoHV-4 strains in cell lines from different origins

Author:
Morán, Pedro; Pérez, Sandra; Odeón, Anselmo; Verna, Andrea
Source:
Comparative immunology, microbiology, and infectious diseases 2019 v.63 pp. 97-103
ISSN:
0147-9571
Subject:
genotype,   etc   ; Herpesviridae; cell lines; cows; cytopathogenicity; growth models; phylogeny; Argentina;     Show all 8 Subjects
Abstract:
... Bovine gammaherpesvirus 4 (BoHV4) is a member of the family Herpesviridae. In Argentina, BoHV4 was isolated and characterized in 2007 from samples of aborted cows. Argentinean isolates are highly divergent and are classified as: Genotype 1(Movar-like), Genotype 2 (DN599-like) and Genotype 3 (a novel group). The aim of this study was to comparatively evaluate the biological characteristics of six A ...
DOI:
10.1016/j.cimid.2019.01.014

11. Does kernel position on the cob affect zeaxanthin, lutein and total carotenoid contents or quality parameters, in zeaxanthin-biofortified sweet-corn?

Author:
Calvo-Brenes, Paula; Fanning, Kent; O'Hare, Tim
Source:
Food chemistry 2019 v.277 pp. 490-495
ISSN:
0308-8146
Subject:
genotype,   etc   ; biofortification; lutein; maturity stage; seeds; sweetcorn; zeaxanthin;     Show all 7 Subjects
Abstract:
... Influence of kernel position on zeaxanthin, lutein, total carotenoid (TC) and quality parameters was evaluated in a zeaxanthin-biofortified and a commercial yellow sweet-corn. Cobs were harvested at six different maturity stages, and the above variables in kernels from the tip-end, middle and base of the cobs were analysed. Kernels from the tip-end had highest zeaxanthin and TC in the zeaxanthin b ...
DOI:
10.1016/j.foodchem.2018.10.141

12. Genomic Medicine–Progress, Pitfalls, and Promise

Author:
Shendure, Jay; Findlay, Gregory M.; Snyder, Matthew W.
Source:
Cell 2019 v.177 no.1 pp. 45-57
ISSN:
0092-8674
Subject:
genotype,   etc   ; disease prevention; equations; genome; genomics; humans; medicine; phenotype;     Show all 8 Subjects
Abstract:
... In the wake of the Human Genome Project (HGP), strong expectations were set for the timeline and impact of genomics on medicine—an anticipated transformation in the diagnosis, treatment, and prevention of disease. In this Perspective, we take stock of the nascent field of genomic medicine. In what areas, if any, is genomics delivering on this promise, or is the path to success clear? Where are we ...
DOI:
10.1016/j.cell.2019.02.003

13. Comparison of the Fatty Acid Compositions of Six Cornelian Cherry (Cornus mas L.) Genotypes Selected From Anatolia

Author:
Ersoy, Nilda; Kalyoncu, İsmail Hakkı; Çitil, Özcan Barış; Yılmaz, Serpil
Source:
Erwerbsobstbau 2019 v.61 no.1 pp. 67-70
ISSN:
0014-0309
Subject:
genotype,   etc   ; Cornus mas; gas chromatography; selection methods; Turkey (country);     Show all 5 Subjects
Abstract:
... This study was carried out on 6 genotypes (K-1, K‑2, K‑3, K‑4, K‑5, K‑6) which have superior characteristics determined by selective breeding method from naturally-grown cornelian cherry in Konya Province. Differences among genotypes were revealed by determining fatty acid contents in samples obtained from experimented cornelian cherry. The fatty acid compositions of the samples were determined by ...
DOI:
10.1007/s10341-018-0388-4

14. Russeting partially restores apple skin permeability to water vapour

Author:
Khanal, Bishnu P.; Ikigu, Godfrey M.; Knoche, Moritz
Source:
Planta 2019 v.249 no.3 pp. 849-860
ISSN:
0032-0935
Subject:
genotype,   etc   ; apple peels; apples; fruits; models; periderm; permeability; water vapor;     Show all 8 Subjects
Abstract:
... MAIN CONCLUSION: The higher water loss of russeted fruit results from the higher permeance of the periderm of the russeted skin as compared to that of the intact cuticle and epidermis. Apple fruit surfaces are often in-parallel composites, comprising areas of intact cuticle (atop a healthy epidermis) adjacent to areas covered by periderm (so-called russet). The occurrence of non-russeting and russ ...
DOI:
10.1007/s00425-018-3044-1

15. Naturally-occurring right terminal hairpin mutations in three genotypes of canine parvovirus (CPV-2a, CPV-2b and CPV-2c) have no effect on their growth characteristics

Author:
Yu, Yongle; Zhang, Jianlou; Wang, Jigui; Xi, Ji; Zhang, Xiaomei; Li, Peiran; Liu, Ying; Liu, Weiquan
Source:
Virus research 2019 v.261 pp. 31-36
ISSN:
0168-1702
Subject:
genotype,   etc   ; Carnivore protoparvovirus 1; mutation; nucleotide sequences; plasmids; China;     Show all 6 Subjects
Abstract:
... We have isolated 4 naturally-occurring strains of CPV in mainland China and have identified them as CPV-2, 2a, 2b and 2c genotypes according to their VP2 sequences which also revealed substitutions within their right terminal regions. To determine if these substitutions affected the growth characteristics of the 4 strains, we constructed plasmids based on their genomic sequences minus their right ...
DOI:
10.1016/j.virusres.2018.12.007

16. An overview of grafting re-establishment in woody fruit species

Author:
Baron, Daniel; Esteves Amaro, Amanda Cristina; Pina, Ana; Ferreira, Gisela
Source:
Scientia horticulturae 2019 v.243 pp. 84-91
ISSN:
0304-4238
Subject:
genotype,   etc   ; callus; fruits; graft compatibility; herbaceous plants; juveniles;     Show all 6 Subjects
Abstract:
... The formation of a successful graft includes a series of biological steps involving immediate responses to the wound, such as callus and functional vascular system formation between graft partners. However, grafts are not always successful when different genotypes (plant species) are grafted, resulting in tissue union and regeneration problems—popularly known as graft incompatibility. Numerous stu ...
DOI:
10.1016/j.scienta.2018.08.012

17. Prevalence of hepatitis C virus NS5A resistance-associated substitutions in chronic infection with genotype 1: A pooled analysis based on deposited sequences in GenBank

Author:
Sharafi, Heidar; Maleki, Saeideh; Alavian, Seyed Moayed
Source:
Virus research 2019 v.259 pp. 54-61
ISSN:
0168-1702
Subject:
genotype,   etc   ; Hepatitis C virus; amino acids; genes; patients;     Show all 5 Subjects
Abstract:
... Resistance-associated substitutions (RASs) in the NS5A gene of hepatitis C virus (HCV) has been studied as one of the predictors of response to NS5A inhibitor-containing regimens. This study aimed to evaluate the prevalence of pre-treatment naturally-occurring NS5A RASs in HCV isolates from patients with chronic HCV genotype 1 (HCV-1) infection retrieved from GenBank.In the search procedure, the s ...
DOI:
10.1016/j.virusres.2018.10.014

18. Allele frequency‐free inference of close familial relationships from genotypes or low‐depth sequencing data

Author:
Waples, Ryan K.; Albrechtsen, Anders; Moltke, Ida
Source:
Molecular ecology 2019 v.28 no.1 pp. 35-48
ISSN:
0962-1083
Subject:
genotype,   etc   ; alleles; gene frequency; genomics; human population; single nucleotide polymorphism;     Show all 6 Subjects
Abstract:
... Knowledge of how individuals are related is important in many areas of research, and numerous methods for inferring pairwise relatedness from genetic data have been developed. However, the majority of these methods were not developed for situations where data are limited. Specifically, most methods rely on the availability of population allele frequencies, the relative genomic position of variants ...
DOI:
10.1111/mec.14954

19. Engineering polymerases for new functions

Author:
Coulther, Timothy A.; Stern, Hannah R.; Beuning, Penny J.
Source:
Trends in biotechnology 2019
ISSN:
0167-7799
Subject:
genotype,   etc   ; DNA; bacteriophages; biotechnology; emulsions; engineering; enzymes; mutagenesis; phenotype;     Show all 9 Subjects
Abstract:
... DNA polymerases are critical tools in biotechnology, enabling efficient and accurate amplification of DNA templates, yet many desired functions are not readily available in natural DNA polymerases. New or improved functions can be engineered in DNA polymerases by mutagenesis or through the creation of protein chimeras. Engineering often necessitates the development of new techniques, such as selec ...
DOI:
10.1016/j.tibtech.2019.03.011

20. Interaction: Fisher’s Optimal Scores Revisited

Author:
Gower, JohnC.; Gardner-Lubbe, Sugnet; Le Roux, NielJ.
Source:
Journal of agricultural, biological, and environmental statistics 2018 v.23 no.1 pp. 92-112
ISSN:
1085-7117
Subject:
genotype; genotype-environment interaction,   etc   ; crops; models; statistics; variety trials;     Show all 6 Subjects
Abstract:
... The normal way of fitting a bilinear model to values of a quantitative variable classified by rows and columns is first to fit the main effects of rows and columns and then fit a biadditive model to the residual table. This gives the ordinary least squares optimal fit, usually visualised by biplots and, among other applications areas, is routinely used in genotype [Formula: see text] environment t ...
DOI:
10.1007/s13253-017-0311-8