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1. Metabolic profiling reveals genotype-associated alterations in carotenoid content during banana postharvest ripening

Author:
Ou Sheng; Zhibin Yin; Wenjie Huang; Mengyu Chen; Mingyi Du; Qian Kong; Alisdair R. Fernie; Ganjun Yi; Shijuan Yan
Source:
Food chemistry 2023 v.403 pp. 134380
ISSN:
0308-8146
Subject:
genotype,   etc   ; bananas; carotenoids; cultivars; food chemistry; genome; glycolysis; health promotion; metabolites; metabolomics; pulp; tricarboxylic acid cycle;     Show all 12 Subjects
Abstract:
... Banana fruits have attracted considerable attention for health-promoting effects attributed to ubiquitous functional metabolites. However, genotype-dependent accumulation patterns of carotenoids in banana remain largely unclear. Here, we performed a systematic metabolomic investigation of 18 banana cultivars of the AAA, AAB, or ABB genome groups. Our results indicate that the levels of soluble sug ...
DOI:
10.1016/j.foodchem.2022.134380

2. Evaluating cost-effective genotyping strategies for genomic selection in oysters

Author:
Thomas A. Delomas; Christopher M. Hollenbeck; Joseph L. Matt; Neil F. Thompson
Source:
Aquaculture 2023 v.562 pp. 738844
ISSN:
0044-8486
Subject:
genotype,   etc   ; Crassostrea; aquaculture; breeding stock; cost effectiveness; genetic improvement; genome; genotyping; marker-assisted selection; oysters; phenotype;     Show all 11 Subjects
Abstract:
... Genomic selection has the potential to increase the rate of genetic gain in aquaculture breeding programs by enabling selection between and within families without phenotyping selection candidates. Due to the wide range of environments in which oysters are cultured, an industry-wide approach of multiple regional breeding programs has been suggested for Crassostrea sp. This necessitates genotyping ...
DOI:
10.1016/j.aquaculture.2022.738844
CHORUS:
10.1016/j.aquaculture.2022.738844

3. Comparative profiling of polyphenols and antioxidants and analysis of antiglycation activities in rapeseed (Brassica napus L.) under different moisture regimes

Author:
Maryam Salami; Bahram Heidari; Helin Tan
Source:
Food chemistry 2023 v.399 pp. 133946
ISSN:
0308-8146
Subject:
genotype,   etc   ; Brassica napus; antioxidants; carotenoids; drought; epicatechin; field capacity; flowers; food chemistry; leaf area; leaves; polyphenols; rapeseed;     Show all 13 Subjects
Abstract:
... Genotype, growth stages, and moisture regimes affect polyphenols as beneficial compounds in rapeseed with edible and medicinal properties. The aims of this study were to assess the effects of tissue, genotype background and moisture on growth, pigment composition, phenolic acids, flavonoids, antioxidant, and antiglycation activities in rapeseed. Treatments included two moisture regimes (10% field ...
DOI:
10.1016/j.foodchem.2022.133946

4. Photomorphogenic tomato mutants high-pigment 1 and aurea responses to iron deficiency

Author:
Marina Alves Gavassi; Frederico Rocha Rodrigues Alves; Carolina Cristina Monteiro; Lucas Aparecido Gaion; Letícia Rodrigues Alves; Renato de Mello Prado; Priscila Lupino Gratão; Rogério Falleiros Carvalho
Source:
Scientia horticulturae 2023 v.307 pp. 111502
ISSN:
0304-4238
Subject:
genotype,   etc   ; Solanum lycopersicum; anthocyanins; biosynthesis; chlorophyll; chlorosis; growth retardation; homeostasis; lipid peroxidation; nutrient content; nutrient deficiencies; plant development; plant growth; tomatoes;     Show all 14 Subjects
Abstract:
... Iron (Fe) is a micronutrient for plant development, as constituent of several photosynthesis- and respiration-related proteins and enzymes. Consequently, Fe deficiency leads to chlorosis in leaves and plant growth impairment. It has become increasingly evident that light signals coordinate iron homeostasis in plants. To further address new insights into how light is a fundamental part of Fe defici ...
DOI:
10.1016/j.scienta.2022.111502

5. Morphological, physiological, biochemical, and transcriptome studies reveal the importance of transporters and stress signaling pathways during salinity stress in Prunus

Author:
Acharya Biswa R.; Sandhu Devinder; Dueñas Christian; Dueñas Marco; Pudussery Manju V.; Kaundal Amita; Ferreira Jorge F.S.; Suarez Donald L.; Skaggs Todd H.
Source:
Scientific reports 2022 v.12 no.1 pp. 1274
ISSN:
2045-2322
Subject:
genotype,   etc   ; Prunus; almonds; chlorides; economic feasibility; electrical conductivity; gene expression regulation; ion channels; proline; salinity; salt stress; salt tolerance; sequence analysis; transcriptome;     Show all 14 Subjects
Abstract:
... The almond crop has high economic importance on a global scale, but its sensitivity to salinity stress can cause severe yield losses. Salt-tolerant rootstocks are vital for crop economic feasibility under saline conditions. Two commercial rootstocks submitted to salinity, and evaluated through different parameters, had contrasting results with the survival rates of 90.6% for 'Rootpac 40' (tolerant ...
Handle:
10113/7709627
DOI:
10.1038/s41598-022-05202-1

6. Genotype by environment interactions in feed efficiency of Pacific abalone (Haliotis discus hannai) reared at different water temperatures

Author:
Wenchao Yu; Yawei Shen; Junyu Liu; Weiguang Zou; Zekun Huang; Miaoqin Huang; Ying Lu; Jinwei Ke; Xuan Luo; Weiwei You; Caihuan Ke
Source:
Aquaculture 2023 v.562 pp. 738764
ISSN:
0044-8486
Subject:
genotype-environment interaction,   etc   ; Haliotis discus hannai; abalone; aquaculture; feed conversion; feed intake; food intake; genetic correlation; genetic improvement; heritability; phenotype; phenotypic variation; temperature; weight gain;     Show all 14 Subjects
Abstract:
... Genetic improvement of feed efficiency (FE) in Pacific abalone (Haliotis discus hannai) can improve farming efficiency and reduce costs. Temperature has important effects on the feeding and growth of abalone, and genotype by environment (G × E) interactions should be considered in selecting breeding programs for genetic gain. To improve the selection strategy, FE performance, genetic parameters, a ...
DOI:
10.1016/j.aquaculture.2022.738764

7. Genetics of novel leaf curl virus disease resistant pepper genotypes and antioxidative profile analysis of their progenies

Author:
Tejpal Singh Sran; Salesh Kumar Jindal; Abhishek Sharma; Neena Chawla
Source:
Scientia horticulturae 2023 v.308 pp. 111563
ISSN:
0304-4238
Subject:
genotype,   etc   ; Bemisia tabaci; Chilli leaf curl virus; ascorbate peroxidase; catechol oxidase; cultivars; disease resistance; leaf curling; pepper; peroxidase; phenylalanine ammonia-lyase; principal component analysis; recessive genes; superoxide dismutase; sweet peppers; tyrosine ammonia-lyase; viruses;     Show all 17 Subjects
Abstract:
... Pepper/Chilli leaf curl virus disease (PepLCVD/ChiLCVD) is the most destructive disease of pepper that seriously reduced pepper production. The LCVD is transmitted by vector whitefly (Bemisia tabaci) so efficiently that even single whitefly is able to transmit the virus. The effective way to manage the LCVD in pepper is to introduce LCVD resistance into agronomically desired cultivars, but the lac ...
DOI:
10.1016/j.scienta.2022.111563

8. Optimizing the test locations and replicates in multi‐environmental cotton registration trials in southern Xinjiang, China

Author:
Naiyin Xu; Yintao Qiao; Suqin Zhao; Xiaoni Yang; Jian Li; Michel Fok
Source:
Crop science 2022 v.62 no.5 pp. 1866-1879
ISSN:
0011-183X
Subject:
genotype; genotype-environment interaction,   etc   ; Gossypium hirsutum; cotton; cultivars; heritability; China;     Show all 7 Subjects
Abstract:
... Multi‐environment trials are routinely conducted around the world to select superior cultivars; the numbers of replicates and locations remains insufficiently studied despite their effects on trial efficiency and cost. The objective of the present study was to compensate for the mentioned lack by dealing with the specific case of cotton (Gossypium hirsutum L.) in arid conditions of China and by es ...
DOI:
10.1002/csc2.20811

9. Phenotypic and Genetic Characteristics in a Cohort of Patients with Usher Genes

Author:
Helena M. Feenstra; Saoud Al-Khuzaei; Mital Shah; Suzanne Broadgate; Morag Shanks; Archith Kamath; Jing Yu; Jasleen K. Jolly; Robert E. MacLaren; Penny Clouston; Stephanie Halford; Susan M. Downes
Source:
Genes 2022 v.13 no.8 pp. -
ISSN:
2073-4425
Subject:
genotype; genotype-phenotype correlation,   etc   ; edema; genes; phenotype; prognosis; retinitis pigmentosa; tomography;     Show all 8 Subjects
Abstract:
... Background: This study aimed to compare phenotype–genotype correlation in patients with Usher syndrome (USH) to those with autosomal recessive retinitis pigmentosa (NS-ARRP) caused by genes associated with Usher syndrome. Methods: Case notes of patients with USH or NS-ARRP and a molecularly confirmed diagnosis in genes associated with Usher syndrome were reviewed. Phenotypic information, including ...
DOI:
10.3390/genes13081423

10. Bayesian GGE model for heteroscedastic multienvironmental trials

Author:
Luciano Antonio de Oliveira; Carlos Pereira da Silva; Alessandra Querino da Silva; Cristian Tiago Erazo Mendes; Joel Jorge Nuvunga; José Airton Rodrigues Nunes; Rafael Augusto da Costa Parrella; Marcio Baleste; Júlio Sílvio de Sousa Bueno Filho
Source:
Crop science 2022 v.62 no.3 pp. 982-996
ISSN:
0011-183X
Subject:
genotype; genotype-environment interaction,   etc   ; Bayesian theory; cultivars; dissection; heteroskedasticity; models; variance;     Show all 8 Subjects
Abstract:
... The dissection of genotype × environment interaction (GEI) is a crucial aspect of the final stages of plant breeding pipelines and recommendation of cultivars. Linear‐bilinear models used to analyze this interaction, such as the additive main effects and multiplicative interaction (AMMI) and genotype plus GEI (GGE), often assume homogeneity of the residual variances across environments which affec ...
DOI:
10.1002/csc2.20696

11. Stability on Maize Hybrids Based on GGE Biplot Graphical Technique

Author:
Seyed Habib Shojaei; Khodadad Mostafavi; Mohammad Reza Bihamta; Ali Omrani; Seyed Mohammad Nasir Mousavi; Árpád Illés; Csaba Bojtor; Janos Nagy
Source:
Agronomy 2022 v.12 no.2 pp. -
ISSN:
2073-4395
Subject:
genotype; genotype-environment interaction,   etc   ; agronomy; analysis of variance; corn; hybrids; probability;     Show all 7 Subjects
Abstract:
... In this study, 12 maize hybrids were planted and evaluated to determine the effect of genotype and genotype-environment interaction (GEI) base GGE (genotype plus genotype-by-environment) using a Graphical biplot technique in four research stations (Arak, Birjand, Shiraz and Karaj) within two years using a Randomized Complete Blocks Design (RCBD). The combined analysis of variance showed that the e ...
DOI:
10.3390/agronomy12020394

12. Assessment of GGE, AMMI, Regression, and Its Deviation Model to Identify Stable Rice Hybrids in Bangladesh

Author:
M Jamil Hasan; M Umma Kulsum; Umakanta Sarker; M Quamrul Islam Matin; Nazmul Hoque Shahin; M Shahjahan Kabir; Sezai Ercisli; Romina Alina Marc
Source:
Plants 2022 v.11 no.18 pp. -
ISSN:
2223-7747
Subject:
genotype; genotype-environment interaction,   etc   ; grain yield; hybrids; models; plant height; rice; Bangladesh;     Show all 8 Subjects
Abstract:
... Twenty-six rice hybrids were evaluated at three locations. Data were normally distributed after running the Shapiro–Wilk test. Plant height and effective tillers/hills showed leptokurtic distribution, indicating these traits were controlled by fewer genes, whereas the rest of the attributes had platykurtic distribution, indicating these traits were controlled by many genes. Most of the traits were ...
DOI:
10.3390/plants11182336

13. Grain yield stability of black soybean lines across three agroecosystems in West Java, Indonesia

Author:
Acep Atma Wijaya; Haris Maulana; Gatut Wahyu Anggoro Susanto; Dadang Sumardi; Suseno Amien; Dedi Ruswandi; Agung Karuniawan
Source:
Open Agriculture 2022 v.7 no.1 pp. 749-763
ISSN:
2391-9531
Subject:
genotype; genotype-environment interaction,   etc   ; Glycine soja; agriculture; agroecosystems; grain yield; soybeans; Indonesia;     Show all 8 Subjects
Abstract:
... Black soybean (Glycine soja (L.) Merril) is one of the potential agricultural commodities in Indonesia. The multilocation trial is the primary requirement for variety release before farmers can widely use the new varieties. Various stability measurements on grain yields will provide more accurate information in selecting superior lines. The aims of the study were to: (i) identify the effect of gen ...
DOI:
10.1515/opag-2022-0137

14. Quantification of genotype × environment interaction of agronomic traits in ashwagandha (Withania somnifera (L.) Dunal)

Author:
A. Kumar; A.C. Jnanesha; V. Kumar M; R.K. Lal
Source:
Acta ecologica Sinica 2022 pp. -
ISSN:
1872-2032
Subject:
genotype; genotype-environment interaction,   etc   ; Ayurvedic medicine; Withania somnifera; genetic variation; medicinal plants; India;     Show all 7 Subjects
Abstract:
... Ashwagandha is a popular industrially medicinal plant used in Ayurveda and other traditional medical systems. We looked at the stability of the sixteen economic traits in the five ashwagandha genotypes in four locations over two years in south India. The pooled ANOVA showed significant differences among different lines of ashwagandha. The five genotypes (G), genotypes × locations interaction (G ×  ...
DOI:
10.1016/j.chnaes.2022.07.002

15. Dissection of genotype × temperature interactions for antioxidant enzymes in Takifugu rubripes

Author:
XinAn Wang; AiJun Ma
Source:
Aquaculture 2022 v.552 pp. 737978
ISSN:
0044-8486
Subject:
genotype; genotype-environment interaction,   etc   ; Takifugu rubripes; aquaculture; catalase; dissection; glutathione peroxidase; superoxide dismutase; temperature;     Show all 9 Subjects
Abstract:
... The activities of antioxidant factors superoxide dismutase (SOD), catalase (CAT), and glutathione peroxidase (GPX) were measured in the livers of Takifugu rubripes cultured at 16 °C, 20 °C, 24 °C, 28 °C, and 32 °C. Additive main effects and multiplicative interaction (AMMI) and genotype main effects and genotype × environment interaction (GGE) Biplot analyses were used to analyze the effects of ge ...
DOI:
10.1016/j.aquaculture.2022.737978

16. Contribution of temperate germplasm to the performance of maize hybrids under stress and non-stress environments in South Africa

Author:
Sphiwokuhle Shandu; Edmore Gasura; Kingstone Mashingaidze; John Derera
Source:
South African journal of plant and soil = 2022 v.39 no.1 pp. 66-76
ISSN:
2167-034X
Subject:
genotype; genotype-environment interaction,   etc   ; corn; germplasm; grain yield; soil; Corn Belt region; South Africa;     Show all 8 Subjects
Abstract:
... Increases in genetic gains are crucial to maize breeding programmes. The objectives of this study were to identify higher-yielding and stable maize hybrids across stress and non-stress environments, to identify representative test environments for testing and selection of superior maize genotypes, and to determine the contribution of temperate maize germplasm in the performance of new tropical hyb ...
DOI:
10.1080/02571862.2021.1994047

17. Genotype by environment analysis on multi‐canopy cropping system in rice: Effects of different types of flag leaves

Author:
Ummu Fitrothul Hidayah; Willy Bayuardi Suwarno; Hajrial Aswidinnoor
Source:
Agronomy journal 2022 v.114 no.1 pp. 356-365
ISSN:
0002-1962
Subject:
genotype; genotype-environment interaction,   etc   ; Oryza sativa; agronomy; dry season; leaves; rice; wet season; Indonesia;     Show all 9 Subjects
Abstract:
... Breeding rice (Oryza sativa L.) for the multi‐canopy (MC) cropping system is one of the novel ideas for increasing production. This system involves combining rice genotypes with different plant heights to form stratified panicles and flag leaves. This study aimed to elucidate the effects of different characteristics of flag leaves of tall plant genotypes on yield and agronomic traits in MC cultiva ...
DOI:
10.1002/agj2.20959

18. Influences of traits associations for essential oil yield stability in multi-environment trials of vetiver (Chrysopogon zizanioides L. Roberty)

Author:
R.K. Lal; C.S. Chanotiya; P. Gupta; A. Mishra
Source:
Biochemical systematics and ecology 2022 v.103 pp. 104448
ISSN:
0305-1978
Subject:
genotype; genotype-environment interaction,   etc   ; Chrysopogon zizanioides; chemotaxonomy; color; cultivars; ecology; essential oils; grasses; India;     Show all 10 Subjects
Abstract:
... Vetiver is a perennial aromatic grass with thin essential oil-rich roots. The current investigation was conducted at the CSIR-CIMAP, Lucknow (India), on the eighty distinct vetiver lines. The experiment was conducted over three consecutive years, 2017–18, 2018–19, and 2019-20 using a randomized complete block design with three replications. The genotype (G) and genotype × environment (GE) interact ...
DOI:
10.1016/j.bse.2022.104448

19. Approaches to studying the developmental switch of Strongyloides – Moving beyond the dauer hypothesis

Author:
Mark Viney; Robert Morris
Source:
Molecular and biochemical parasitology 2022 v.249 pp. 111477
ISSN:
0166-6851
Subject:
genotype,   etc   ; Strongyloides; parasitology; phenotype;     Show all 4 Subjects
Abstract:
... Strongyloides’ developmental switch between direct, parasitic and indirect, free-living development has intrigued, confused, and fascinated biologists since it was first discovered more than 100 years ago. Proximately, the switch is controlled by environmental conditions that developing larvae are exposed to, but genotypes differ in their sensitivity to these cues. Ultimately, selection will act o ...
DOI:
10.1016/j.molbiopara.2022.111477

20. Genotype by environment interaction of newly developed sorghum lines in Namibia

Author:
Maliata Athon Wanga; Hussein Shimelis; Jacob Mashilo
Source:
Euphytica 2022 v.218 no.10 pp. 147
ISSN:
0014-2336
Subject:
genotype; genotype-environment interaction,   etc   ; genetic variation; grain yield; models; mutants; panicles; plant height; prediction; Namibia;     Show all 10 Subjects
Abstract:
... The magnitude of genotype by environment interaction (GEI) is crucial for selecting high performing and adapted genotypes for targeted breeding. The aim of the study was to determine GEI of newly-developed mutant and traditional sorghum lines for grain yield and yield related traits for drought-prone areas of Namibia. Fifty sorghum genotypes were evaluated under field conditions using a 10 × 5 alp ...
DOI:
10.1007/s10681-022-03099-5