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1. Correction to: Long-term study of a subdioecious Populus ×canescens family reveals sex lability of females and reproduction behaviour of cosexual plants

Author:
Sabatti, Maurizio; Gaudet, Muriel; Müller, Niels A.; Kersten, Birgit; Gaudiano, Cosimo; Mugnozza, Giuseppe Scarascia; Fladung, Matthias; Beritognolo, Isacco
Source:
Plant reproduction 2020 v.33 no.1 pp. 19-20
ISSN:
2194-7953
Subject:
genotype,   etc   ; Populus canescens; females; reproduction;     Show all 4 Subjects
Abstract:
... Table 4 in the original publication reports incomplete genotype names in the column “Cross” and wrong codes in the column “Generation”. ...
DOI:
10.1007/s00497-019-00381-w

2. Novel species of Teschovirus B comprises at least three distinct evolutionary genotypes

Author:
Yang, Taotao; Lu, Yingmei; Zhang, Lingqian; Li, Xinyue; Chang, Yuan
Source:
Transboundary and emerging diseases 2020 v.67 no.2 pp. 1015-1018
ISSN:
1865-1674
Subject:
genotype,   etc   ; Teschovirus; divergent evolution; phylogeny;     Show all 4 Subjects
Abstract:
... Conventionally, Porcine teschovirus (PTV) consists of 13 genotypes (PTV 1–13, which belong to Teschovirus A); however, several novel members including PTV 14–22 have been discovered recently. PTV 21 was identified as a novel Teschovirus species named Teschovirus B. In this study, almost all 22 reported PTV genotypes except PTV 6, 7, 12 and 20 were identified in the pig populations of western Jiang ...
DOI:
10.1111/tbed.13400

3. Recent advances on constraint-based models by integrating machine learning

Author:
Rana, Pratip; Berry, Carter; Ghosh, Preetam; Fong, Stephen S
Source:
Current opinion in biotechnology 2020 v.64 pp. 85-91
ISSN:
0958-1669
Subject:
genotype,   etc   ; artificial intelligence; infancy; phenotype; simulation models;     Show all 5 Subjects
Abstract:
... Research that meaningfully integrates constraint-based modeling with machine learning is at its infancy but holds much promise. Here, we consider where machine learning has been implemented within the constraint-based modeling reconstruction framework and highlight the need to develop approaches that can identify meaningful features from large-scale data and connect them to biological mechanisms t ...
DOI:
10.1016/j.copbio.2019.11.007

4. Genotype‐by‐environment interactions for seminal fluid expression and sperm competitive ability

Author:
Patlar, Bahar; Ramm, Steven A.
Source:
Journal of evolutionary biology 2020 v.33 no.2 pp. 225-236
ISSN:
1010-061X
Subject:
genotype; genotype-environment interaction,   etc   ; Platyhelminthes; environmental factors; females; hermaphroditism; males; paternity; sperm competition; spermatozoa;     Show all 10 Subjects
Abstract:
... Sperm competition commonly occurs whenever females mate multiply, leading to variation in male paternity success. This can be due to variation in the various traits that might affect sperm competitive ability, which itself depends on both genetic and environmental factors, as well as on genotype‐by‐environment interactions (GEI). Seminal fluid is a major component of the male ejaculate that is oft ...
DOI:
10.1111/jeb.13568

5. Symbiotic bacteria of plant-associated fungi: friends or foes?

Author:
Bastías, Daniel A; Johnson, Linda J; Card, Stuart D
Source:
Current opinion in plant biology 2020 v.56 pp. 1-8
ISSN:
1369-5266
Subject:
genotype,   etc   ; bacteria; environmental factors; fungi; hyphae; microsymbionts; mycelium; pathogens;     Show all 8 Subjects
Abstract:
... Many bacteria form symbiotic associations with plant-associated fungi. The effects of these symbionts on host fitness usually depend on symbiont or host genotypes and environmental conditions. However, bacterial endosymbionts, that is those living within fungal cells, may positively regulate host performance as their survival is often heavily dependent on host fitness. Contrary to this, bacteria t ...
DOI:
10.1016/j.pbi.2019.10.010

6. Current status of pan-genome analysis for pathogenic bacteria

Author:
Kim, Yeji; Gu, Changdai; Kim, Hyun Uk; Lee, Sang Yup
Source:
Current opinion in biotechnology 2020 v.63 pp. 54-62
ISSN:
0958-1669
Subject:
genotype-phenotype correlation,   etc   ; computational methodology; therapeutics; virulent strains;     Show all 4 Subjects
Abstract:
... Biological knowledge accumulated over the decades and advances in computational methods have facilitated the implementation of pan-genome analysis that aims at better understanding of genotype-phenotype associations of a specific group of organisms. Pan-genome analysis has been shown to be an effective approach to better understand a clade of pathogenic bacteria because it helps developing various ...
DOI:
10.1016/j.copbio.2019.12.001

7. Phenotypic variation in spatially structured microbial communities: ecological origins and consequences

Author:
D’Souza, Glen G
Source:
Current opinion in biotechnology 2020 v.62 pp. 220-227
ISSN:
0958-1669
Subject:
genotype,   etc   ; ecosystems; evolution; microbial communities; phenotypic variation; population dynamics;     Show all 6 Subjects
Abstract:
... Microbial cells in nature live within dense multispecies conglomerates, forming a self-organizing ecosystem. In such assemblies, genotypes interact with each other in a myriad of ways, driving community dynamics and functionalities. The role of interactions between genotypes and their consequences for spatial structure and functional outcomes are being increasingly studied to understand the ecolog ...
DOI:
10.1016/j.copbio.2019.12.013

8. The ecology and evolution of microbial metabolic strategies

Author:
Bajic, Djordje; Sanchez, Alvaro
Source:
Current opinion in biotechnology 2020 v.62 pp. 123-128
ISSN:
0958-1669
Subject:
genotype-phenotype correlation,   etc   ; ecological competition; evolution; microorganisms; models; nutrients;     Show all 6 Subjects
Abstract:
... Free-living microbes are generally capable of growing on multiple different nutrients. Some of those nutrients are used simultaneously, while others are used sequentially. The pattern of nutrient preferences and co-utilization defines the metabolic strategy of a microorganism. Metabolic strategies can substantially affect ecological interactions between species, but their evolution and distributio ...
DOI:
10.1016/j.copbio.2019.09.003

9. Correction to: Leg health, growth and carcass characteristics in growing-finishing pigs of two different genotypes reared on Swedish organic farms

Author:
Wallenbeck, A.; Eliasson, C.; Lundeheim, N.; Nilsson, K.
Source:
Organic agriculture 2020 v.10 no.1 pp. 105-106
ISSN:
1879-4238
Subject:
genotype,   etc   ; carcass characteristics; farms; organic production; rearing; swine; Sweden;     Show all 7 Subjects
Abstract:
... The original version of this article unfortunately contained an error in Figure 1. ...
DOI:
10.1007/s13165-019-00263-5

10. Hepatitis B Virus: Alternative phylogenetic hypotheses and its impact on molecular evolution inferences

Author:
Godoy, Bibiane A.; Pinho, João Renato R.; Fagundes, Nelson J.R.
Source:
Virus research 2020 v.276 pp. 197776
ISSN:
0168-1702
Subject:
genotype,   etc   ; Hepatitis B virus; humans; natural history; phylogeny; uncertainty;     Show all 6 Subjects
Abstract:
... Characterizing molecular evolution patterns of the Hepatitis B Virus (HBV) is important for a better understanding of the natural history of this infection. However, several molecular evolution estimates are conditioned on tree topology. There is no consensus about the phylogenetic relationships of HBV genotypes, and different studies often find alternative topologies. While most studies consider ...
DOI:
10.1016/j.virusres.2019.197776

11. Variation in avenanthramide content in spring oat over multiple environments

Author:
Michels, Deanna K.; Chatham, Laura A.; Butts-Wilmsmeyer, Carrie J.; Juvik, John A.; Kolb, Frederic L.
Source:
Journal of cereal science 2020 v.91 pp. 102886
ISSN:
0733-5210
Subject:
genotype; genotype-environment interaction,   etc   ; antioxidant activity; avenanthramides; breeding lines; breeding methods; breeding programs; climate; cultivars; heritability; oats; phytochemicals; plant breeding;     Show all 13 Subjects
Abstract:
... Avenanthramides (AVNs), a group of phytochemicals which are unique to oats, provide health benefits through antioxidant activity and other bioactivities. In this study, we explored genotype-by-environment interactions and heritability for AVN concentrations in oats. Avenanthramide concentrations were quantified for 100 breeding lines and cultivars at three locations over two years. While year and ...
DOI:
10.1016/j.jcs.2019.102886

12. Physical quality and mineral composition of new Mesoamerican bean lines developed for cultivation in Brazil

Author:
Ribeiro, Nerinéia Dalfollo; Kläsener, Greice Rosana
Source:
Subtropical plant science 2020 v.89 pp. 103479
ISSN:
0889-1575
Subject:
genotype; genotype-environment interaction,   etc   ; Phaseolus vulgaris; black beans; breeding programs; cultivars; grains; human nutrition; mineral content; minerals; plant breeding; potassium; seed coat; Brazil;     Show all 14 Subjects
Abstract:
... The present study was undertaken to evaluate whether new common bean lines present differences in their physical quality and mineral composition traits; investigate correlations between those traits; and to select common bean lines for use in human nutrition and in breeding programs. Four experiments were carried out to examine 17 genotypes (cultivars and lines) of carioca beans (beige seed coat w ...
DOI:
10.1016/j.jfca.2020.103479

13. Genotype-by-environment interaction analysis of nutritional composition in newly-developed sweetpotato clones

Author:
Gurmu, Fekadu; Shimelis, Hussein; Laing, Mark; Mashilo, Jacob
Source:
Subtropical plant science 2020 v.88 pp. 103426
ISSN:
0889-1575
Subject:
genotype; genotype-environment interaction,   etc   ; beta-carotene; breeding programs; clones; dry matter content; fructose; glucose; industrial applications; iron; nutrient content; nutrition; starch; sucrose; sweet potatoes; zinc; Ethiopia;     Show all 17 Subjects
Abstract:
... Development of sweetpotato genotypes with enhanced nutritional composition is key to improve food and nutrition security and for industrial applications. The objective of this study was to determine the effect of genotype-by-environment interaction (GEI) on nutritional composition of sweetpotato clones to identify and select promising clones for large-scale production. Root dry matter content (RDM ...
DOI:
10.1016/j.jfca.2020.103426

14. Assessment of terminal drought tolerance among elite wheat (Triticum aestivum L.) genotypes using selected agronomic and physiological traits

Author:
Thungo, Zamalotshwa; Shimelis, Hussein; Odindo, Alfred O.; Mashilo, Jacob
Source:
Acta agriculturæ Scandinavica 2020 v.70 no.3 pp. 177-194
ISSN:
1651-1913
Subject:
genotype; genotype-environment interaction,   etc   ; Triticum aestivum; breeding; canopy; chlorophyll; drought; drought tolerance; grain yield; greenhouses; heading; leaves; parents; physiological response; seeds; selection response; stomatal conductance; temperature; tillers; wheat;     Show all 20 Subjects
Abstract:
... The selection response of wheat (Triticum aestivum L.) under water-limited condition can be enhanced through breeding novel genotypes possessing drought-adaptive and yield-related agronomic and physiological traits. The objective of this study was to evaluate terminal drought tolerance among bread wheat genotypes and select superior parents for breeding. Agronomic and physiological responses of 28 ...
DOI:
10.1080/09064710.2019.1691644

15. Variation in flavonoids in a collection of peppers (Capsicum sp.) under organic and conventional cultivation: effect of the genotype, ripening stage, and growing system

Author:
Ribes‐Moya, Ana M; Adalid, Ana M; Raigón, Maria D; Hellín, Pilar; Fita, Ana; Rodríguez‐Burruezo, Adrián
Source:
Journal of the science of food and agriculture 2020 v.100 no.5 pp. 2208-2223
ISSN:
0022-5142
Subject:
genotype; genotype-environment interaction,   etc   ; Capsicum; acreage; apigenin; breeding; fruits; genetic variation; germplasm; kaempferol; landraces; luteolin; myricetin; organic foods; organic production; peppers; quercetin; ripening;     Show all 18 Subjects
Abstract:
... BACKGROUND: In recent years, the acreage used for organic agriculture and the demand for organic fruit and vegetables have increased considerably. Given this scenario, landraces, such as Capsicum landraces, can provide valuable germplasm. Capsicum peppers are very interesting because of their high phenolic content, and particularly their flavonoid content, which provides a high added value. Moreov ...
DOI:
10.1002/jsfa.10245

16. Breeding effects on the genotype × environment interaction for yield of durum wheat grown after the Green Revolution: The case of Spain

Author:
Chairi, Fadia; Aparicio, Nieves; Serret, Maria Dolores; Araus, José Luis
Source:
The crop journal 2020
ISSN:
2214-5141
Subject:
genotype; genotype-environment interaction,   etc   ; breeding; canopy; durum wheat; environmental factors; germplasm; grain yield; planting date; stomata; temperature; transpiration; water uptake; water use efficiency; Spain;     Show all 15 Subjects
Abstract:
... This study evaluates the changes caused by breeding in the genotype by environment (G × E) interaction of the durum wheat varieties most widely cultivated in Spain after the Green Revolution. A set of 12 cultivars was tested in 27 environments, which are understood as the combination of different sites, years, and treatments (water regime and planting dates), representative of the durum wheat grow ...
DOI:
10.1016/j.cj.2020.01.005

17. Genotype by environment interaction for alkenyl glucosinolates content in winter oilseed rape (Brassica napus L.) using additive main effects and multiplicative interaction model

Author:
Bocianowski, Jan; Liersch, Alina; Nowosad, Kamila
Source:
Current plant biology 2020 v.21 pp. 100137
ISSN:
2214-6628
Subject:
genotype; genotype-environment interaction,   etc   ; Brassica napus; breeding programs; cultivars; environmental factors; glucosinolates; hybrids; models; open pollination; quantitative traits; seeds; winter; Poland;     Show all 14 Subjects
Abstract:
... Genotype by environment interaction is important for quantitative traits in all organisms. All organisms are exposed on the influence of different environmental conditions. Changes in the performance of genotypes across different environments are referred to as genotype by environment interactions. The objective of this study was to assess genotype by environment interaction for alkenyl glucosinol ...
DOI:
10.1016/j.cpb.2020.100137

18. Authentication of Iberian pork official quality categories using a portable near infrared spectroscopy (NIRS) instrument

Author:
Horcada, A.; Valera, M.; Juárez, M.; Fernández-Cabanás, V.M.
Source:
Food chemistry 2020 v.318 pp. 126471
ISSN:
0308-8146
Subject:
genotype,   etc   ; Iberian (swine breed); animals; near-infrared spectroscopy; pig carcasses; pork; raw meat; slaughterhouses; subcutaneous fat;     Show all 9 Subjects
Abstract:
... A portable near infrared spectroscopy (NIRS) instrument was evaluated for the discrimination of individual Iberian pig carcasses into the four official quality categories (defined by a combination of genotype and feeding regime). Spectra were obtained scanning four anatomical locations (live animal skin, carcass surface, fresh meat and subcutaneous fat samples) at a commercial abattoir, using a ha ...
DOI:
10.1016/j.foodchem.2020.126471

19. Genetic diversity in muskmelon based on SSR markers and morphological traits under well-watered and water-deficit condition

Author:
Ansari, Waquar Akhter; Atri, Neelam; Yang, Luming; Singh, Bijendra; Pandey, Sudhakar
Source:
Biocatalysis and agricultural biotechnology 2020 v.26 pp. 101630
ISSN:
1878-8181
Subject:
genotype,   etc   ; alleles; branching; females; flowering; fruits; genetic variation; horticulture; loci; males; microsatellite repeats; muskmelons; quantitative traits;     Show all 13 Subjects
Abstract:
... In the present study genetic diversity among 48 muskmelon accessions was analyzed employing various morphological traits under well-watered and water-deficit condition and SSR markers. Maximum values for horticultural traits were, 44 cm for fruit polar circumference, 33.2 cm for fruit equatorial circumference, 21 for number of fruits, 41.5 for days to first male flowering, 44 for days to 50% male ...
DOI:
10.1016/j.bcab.2020.101630

20. Pullulanase activity: A novel indicator of inherent resistant starch in rice (Oryza sativa. L)

Author:
Krishnan, Veda; Awana, Monika; Samota, Mahesh Kumar; Warwate, Sunil Indrajit; Kulshreshtha, Ankur; Ray, Mrinmoy; Bollinedi, Haritha; Singh, Ashok Kumar; Thandapilly, Sijo Joseph; Praveen, Shelly; Singh, Archana
Source:
International journal of biological macromolecules 2020 v.152 pp. 1213-1223
ISSN:
0141-8130
Subject:
genotype,   etc   ; Oryza sativa; amylopectin; amylose; crops; enzyme activity; microstructure; models; pullulanase; resistant starch; rice; starch granules;     Show all 12 Subjects
Abstract:
... Starch quality studies over the decades highlighted the immense health benefits of resistant starch (RS), but still much is needed to elucidate the science behind its inherent formation. Till date, there is no report to establish the relationship between inherent RS content and pullulanase (PUL) activity in any of the crops. In this study, we emphasize the novel role of debranching enzyme, PUL tow ...
DOI:
10.1016/j.ijbiomac.2019.10.218