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1. Analysis of Associations of Polymorphic Loci of the LOXL1 Gene with the Development of Primary Open-Angle Glaucoma in Women of the Central Chernozem Region of Russia

Author:
N. V. Eliseeva; I. V. Ponomarenko; M. I. Churnosov
Source:
Russian journal of genetics 2022 v.58 no.2 pp. 205-210
ISSN:
1022-7954
Subject:
genotyping,   etc   ; Russia; alleles; females; glaucoma; haplotypes; risk;     Show all 7 Subjects
Abstract:
... A replicative study of associations of the LOXL1 gene polymorphism with primary open-angle glaucoma (POAG) in the female population of the Central Chernozem region of Russia was performed. The work was done in the design “patients–control.” The study sample consisted of 290 women with POAG and 220 women in the control group. Three polymorphic loci of the LOXL1 gene (rs2165241, rs4886776, rs893818) ...
DOI:
10.1134/S1022795422020041

2. Detection of five common variants of ABO gene by a triplex probe-based fluorescence-melting-curve-analysis

Author:
Mikiko Soejima; Yoshiro Koda
Source:
Analytical biochemistry 2022 v.648 pp. 114668
ISSN:
0003-2697
Subject:
genotyping,   etc   ; alleles; blood groups; databases; fluorescence; hemagglutination;     Show all 6 Subjects
Abstract:
... Current studies have suggested that the ABO blood group system is associated with several clinical conditions. For large-scale genotyping of ABO alleles, we developed a triplex fluorescence melting curve analysis (FMCA) to determine five single nucleotide variants (SNVs), c.261delG, c.796C>A, c.802G>A and c.803G>C and c.1061delC, responsible for common ABO phenotypes using dual-labeled self-quench ...
DOI:
10.1016/j.ab.2022.114668

3. DNA-Based Technologies for Grapevine Biodiversity Exploitation: State of the Art and Future Perspectives

Author:
Clizia Villano; Riccardo Aiese Cigliano; Salvatore Esposito; Vincenzo D’Amelia; Marina Iovene; Domenico Carputo; Riccardo Aversano
Source:
Agronomy 2022 v.12 no.2 pp. -
ISSN:
2073-4395
Subject:
genotyping,   etc   ; agronomy; biodiversity; germplasm; grapes; homonym; vegetative propagation;     Show all 7 Subjects
Abstract:
... The cultivated grapevine, Vitis vinifera subsp. vinifera L., is represented by an enormous population of varieties and clones. They arise from the accumulation of gametic and somatic mutations during centuries of sexual and asexual propagation. These varieties represent a vast reservoir of traits/alleles that could be useful in improving the berry quality as well as against environmental stresses. ...
DOI:
10.3390/agronomy12020491

4. High-Resolution Melting PCR as Rapid Genotyping Tool for Brucella Species

Author:
Guillaume Girault; Ludivine Perrot; Virginie Mick; Claire Ponsart
Source:
Microorganisms 2022 v.10 no.2 pp. -
ISSN:
2076-2607
Subject:
genotyping,   etc   ; DNA; bacteriology; brucellosis; genetic similarity; genome; vaccines;     Show all 7 Subjects
Abstract:
... Brucella sp. are the causative agents of brucellosis. One of the main characteristics of the Brucella genus concerns its very high genetic homogeneity. To date, classical bacteriology typing is still considered as the gold standard assay for direct diagnosis of Brucella. Molecular approaches are routinely used for the identification of Brucella at the genus level. However, genotyping is more compl ...
DOI:
10.3390/microorganisms10020336

5. Multi-donor × elite-based populations reveal QTL for low-lodging wheat

Author:
M. Fernanda Dreccer; Bethany Macdonald; Claire A. Farnsworth; M. Valeria Paccapelo; Mary Anne Awasi; Anthony G. Condon; Kerrie Forrest; Ian Lee Long; C. Lynne McIntyre
Source:
Theoretical and applied genetics 2022 v.135 no.5 pp. 1685-1703
ISSN:
0040-5752
Subject:
genotyping,   etc   ; cultivars; genetic correlation; germplasm; heritability; phenotype; wheat;     Show all 7 Subjects
Abstract:
... KEY MESSAGE: Low-lodging high-yielding wheat germplasm and SNP-tagged novel alleles for lodging were identified in a process that involved selecting donors through functional phenotyping for underlying traits with a designed phenotypic screen, and a crossing strategy involving multiple-donor × elite populations. Lodging is a barrier to achieving high yield in wheat. As part of a study investigatin ...
DOI:
10.1007/s00122-022-04063-6

6. Optimisation of methodology for whole genome sequencing of Measles Virus directly from patient specimens

Author:
Helene Schulz; Joanne Hiebert; Jasmine Frost; Elizabeth McLachlan; Alberto Severini
Source:
Journal of virological methods 2022 v.299 pp. 114348
ISSN:
0166-0934
Subject:
genotyping,   etc   ; Measles morbillivirus; genetic variation; genome; monitoring; patients;     Show all 6 Subjects
Abstract:
... In an era of decreasing genetic diversity of Measles Virus (MeV), effective surveillance requires a higher-resolution genotyping method or whole genome sequencing (WGS) to document elimination. Through optimization of MeV WGS protocol, we developed a MeV-specific probe enrichment method that allows next generation sequencing from clinical specimens. With the probe enrichment method, 70% of specime ...
DOI:
10.1016/j.jviromet.2021.114348

7. A high-resolution consensus linkage map for barley based on GBS-derived genotypes

Author:
Amina Abed; Ana Badea; Aaron Beattie; Raja Khanal; James Tucker; François Belzile
Source:
Genome 2022 v.65 no.2 pp. 83-94
ISSN:
1480-3321
Subject:
genotyping by sequencing,   etc   ; barley; chromosome mapping; genetic recombination; genomics;     Show all 5 Subjects
Abstract:
... As genotyping-by-sequencing (GBS) is widely used in barley genetic studies, the translation of the physical position of GBS-derived SNPs into accurate genetic positions has become relevant. The main aim of this study was to develop a high-resolution consensus linkage map based on GBS-derived SNPs. The construction of this integrated map involved 11 bi-parental populations composed of 3743 segregat ...
DOI:
10.1139/gen-2021-0055

8. Development of SNP Marker Sets for Marker-Assisted Background Selection in Cultivated Cucumber Varieties

Author:
Eun Su Lee; Hee-Bum Yang; Jinhee Kim; Hye-Eun Lee; Ye-Rin Lee; Do-Sun Kim
Source:
Agronomy 2022 v.12 no.2 pp. -
ISSN:
2073-4395
Subject:
genotyping,   etc   ; agronomy; cucumbers; genomics; phylogeny; single nucleotide polymorphism; transcriptome;     Show all 7 Subjects
Abstract:
... Marker-assisted background selection is a powerful molecular tool that can enhance breeding efficiency through the analysis of a large number of markers representing the entire genomic background for precise selection. In the present study, the transcriptomes of 38 cucumber inbred lines with diverse traits were sequenced for single nucleotide polymorphism (SNP) mining for practical application to ...
DOI:
10.3390/agronomy12020487

9. Enhanced detection of Giardia duodenalis mixed assemblage infections in pre-weaned dairy calves using next generation sequencing

Author:
Josephine S.Y. Hublin; Jenny G. Maloney; Nadja S. George; Aleksey Molokin; Jason E. Lombard; Natalie J. Urie; Chelsey B. Shivley; Monica Santin
Source:
Veterinary parasitology 2022 v.304 pp. 109702
ISSN:
0304-4017
Subject:
genotyping,   etc   ; Giardia lamblia; gastrointestinal diseases; pathogens; pollution; veterinary parasitology;     Show all 6 Subjects
Abstract:
... Giardia duodenalis is one of the most common parasitic causes of gastrointestinal illness in humans worldwide with widespread infections in mammalian hosts. It frequently infects cattle, producing a high number of cysts. Cattle can harbor both host-adapted assemblage E and human pathogenic assemblages A and B. Previous studies have demonstrated that conventional molecular methods lack the sensitiv ...
DOI:
10.1016/j.vetpar.2022.109702

10. A Study of Associations Between rs9349379 (PHACTR1), rs2891168 (CDKN2B-AS), rs11838776 (COL4A2) and rs4880 (SOD2) Polymorphic Variants and Coronary Artery Disease in Iranian Population

Author:
Abolfazl Yari; Nasrollah Saleh-Gohari; Moghaddameh Mirzaee; Fatemeh Hashemi; Kolsoum Saeidi
Source:
Biochemical genetics 2022 v.60 no.1 pp. 106-126
ISSN:
0006-2928
Subject:
genotyping,   etc   ; alleles; coronary artery disease; homozygosity; regression analysis; risk factors;     Show all 6 Subjects
Abstract:
... Recent genome-wide association studies reported the association of polymorphic alleles of PHACTR1 (rs9349379 (G)), CDDKN2B-AS1 (rs2891168 (G)), COL4A2 (rs11838776 (A)) and SOD2 (rs4880 (T)) with increased risk of coronary artery disease (CAD). The aim of our study was to assess the association of genetic variants with risk of CAD and its severity and in Southeast Iranian population. This study was ...
DOI:
10.1007/s10528-021-10089-0

11. ADRB2 gene influences responsiveness to physical exercise programs: A longitudinal study applied to overweight or obese Brazilian children and adolescents

Author:
Silvia de Souza e Silva; Neiva Leite; Lupe Furtado-Alle; Ricardo Lehtonen Rodrigues de Souza; Patricia Ribeiro Paes Corazza; Maiara Cristina Tradiotto; Gerusa Eisfeld Milano; Larissa Rosa da Silva; Juliana Pizzi; Maria de Fátima Aguiar Lopes; Wendell Arthur Lopes; Luciane Viater Tureck
Source:
Gene 2022 v.820 pp. 146296
ISSN:
0378-1119
Subject:
genotyping,   etc   ; body fat; exercise; gene expression; genes; genotype; longitudinal studies;     Show all 7 Subjects
Abstract:
... We aimed to investigate whether the expression levels and polymorphisms in the ADRB2 gene have influenced the anthropometric and cardiometabolic outcomes changes in obese/overweight children submitted to physical exercise programs. This longitudinal study included 197 overweight or obese children aged 10–16 years, submitted to physical exercise programs - three sessions per week for 12 weeks. Anth ...
DOI:
10.1016/j.gene.2022.146296

12. Genomic and evolutionary characteristics of G3P[8] group a rotavirus strains in China, 2016 to 2018

Author:
Xiafei Liu; Mengxuan Wang; Mingwen Wang; Jinbo Xiao; Tongyao Mao; Huiying Li; Qing Zhang; Xiangyu Kong; Hong Wang; Dandi Li; Zhaojun Duan
Source:
Infection, genetics, and evolution 2022 v.101 pp. 105287
ISSN:
1567-1348
Subject:
genotyping,   etc   ; Rotavirus A; ancestry; evolution; genomics; genotype; infection; monitoring; viruses;     Show all 9 Subjects
Abstract:
... Rotavirus A (RVA) G3P[8] is sporadically detected in China, although G9P[8] predominates. To evaluate their genetic composition at the whole-genome level, 24 G3P[8] RVA strains isolated from children under five years were sequenced and characterized. The 24 strains were genotyped as G3-P[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1, indicating the Wa-like genotype constellation. A maximum clade credibility (MCC) ...
DOI:
10.1016/j.meegid.2022.105287

13. Searching for transmissible cancers among the mussels of Europe

Author:
Adrian Baez‐Ortega; Elizabeth P. Murchison
Source:
Molecular ecology 2022 v.31 no.3 pp. 719-722
ISSN:
0962-1083
Subject:
genotyping,   etc   ; Mytilus; chimerism; ecology; evolution; histology; ingestion; mussels; neoplasms; Europe;     Show all 10 Subjects
Abstract:
... Transmissible cancers are infectious malignant cell clones that spread among individuals through transfer of living cancer cells. Several such clones have been identified in various species of marine bivalve molluscs, including mussels, clams and cockles. These parasitic cell lineages cause a leukaemia‐like disease called disseminated neoplasia, and are presumed to pass between hosts by ingestion ...
DOI:
10.1111/mec.16330

14. Association of leptin and leptin receptor genes variants and pulmonary tuberculosis susceptibility, clinical manifestations in a Chinese population

Author:
Hong-Miao Li; Li-Jun Wang; Fei Tang; Hai-Feng Pan; Tian-Ping Zhang
Source:
Microbial pathogenesis 2022 v.165 pp. 105499
ISSN:
0882-4010
Subject:
genotyping,   etc   ; alleles; fever; haplotypes; leptin; leptin receptors; ligases; models; pathogenesis; tuberculosis;     Show all 10 Subjects
Abstract:
... The aim of our study was to investigate the association of leptin (LEP) gene (rs11761556, rs12706832, rs2167270), leptin receptor (LEPR) gene (rs1137100, rs1137101, rs1805096) variants and pulmonary tuberculosis (PTB) susceptibility, as well as their several clinical manifestations, in a Chinese population. This study included a cohort of 489 PTB patients and 489 healthy controls, and six SNPs wer ...
DOI:
10.1016/j.micpath.2022.105499

15. Cross-species transferability of genomic SSR markers and genetic diversity among Asparagus racemosus Willd. Accessions

Author:
Chithra Madhanamohanan Geetha; Elenjikkal Avarachan Siril
Source:
Plant gene 2022 v.31 pp. 100361
ISSN:
2352-4073
Subject:
genotyping,   etc   ; Asparagus racemosus; cluster analysis; gardens; genetic variation; genomics; genotype; India;     Show all 8 Subjects
Abstract:
... Asparagus racemosus Willd. is an important multipurpose plant, recognized as queen of herbs due to its important medicinal properties. The objective of this study was to contribute to the understanding of A. racemosus genetic diversity by genotyping 20 accessions from ten different agro-ecological zones of Kerala state, India using simple sequence repeat (SSR) markers. A set of 22 SSR markers prev ...
DOI:
10.1016/j.plgene.2022.100361

16. Dissection of the practical soybean breeding pipeline by developing ZDX1, a high-throughput functional array

Author:
Rujian Sun; Bincheng Sun; Yu Tian; Shanshan Su; Yong Zhang; Wanhai Zhang; Jingshun Wang; Ping Yu; Bingfu Guo; Huihui Li; Yanfei Li; Huawei Gao; Yongzhe Gu; Lili Yu; Yansong Ma; Erhu Su; Qiang Li; Xingguo Hu; Qi Zhang; Rongqi Guo; Shen Chai; Lei Feng; Jun Wang; Huilong Hong; Jiangyuan Xu; Xindong Yao; Jing Wen; Jiqiang Liu; Yinghui Li; Lijuan Qiu
Source:
Theoretical and applied genetics 2022 v.135 no.4 pp. 1413-1427
ISSN:
0040-5752
Subject:
genotyping,   etc   ; alleles; artificial selection; dissection; genomics; microarray technology; prediction; progeny; soybeans;     Show all 9 Subjects
Abstract:
... KEY MESSAGE: We developed the ZDX1 high-throughput functional soybean array for high accuracy evaluation and selection of both parents and progeny, which can greatly accelerate soybean breeding. Microarray technology facilitates rapid, accurate, and economical genotyping. Here, using resequencing data from 2214 representative soybean accessions, we developed the high-throughput functional array ZD ...
DOI:
10.1007/s00122-022-04043-w

17. Genome-Wide Association Analyses of Osteochondrosis in Belgian Warmbloods Reveal Candidate Genes Associated With Chondrocyte Development

Author:
Alize Drabbe; Steven Janssens; Sarah Blott; Bart J Ducro; Marie Fontanel; Liesbeth Francois; Anouk Schurink; Anneleen Stinckens; Gabriella Lindgren; Bram Van Mol; Frederik Pille; Nadine Buys; Brandon D. Velie
Source:
Journal of equine veterinary science 2022 v.111 pp. 103870
ISSN:
0737-0806
Subject:
genotyping,   etc   ; blood; cell differentiation; chromosomes; hock; horses; osteochondrosis; stifle; veterinary medicine;     Show all 9 Subjects
Abstract:
... Osteochondrosis (OC) is an important skeletal disease causing profound welfare concerns in horses. Although numerous studies have explored the genetics underlying OC in various breeds, the Belgian Warmblood (BW) remains unstudied despite having a concerning prevalence of 32.0%. As a result, this study aimed to conduct genome-wide association (GWA) analyses to identify candidate variants associated ...
DOI:
10.1016/j.jevs.2022.103870

18. Information-entropy approach to the analysis of genetic diversity of populations (analytical review)

Author:
V. M. Kuznetsov
Source:
Agrarnaâ nauka Evro-Severo-Vostoka 2022 v.23 no.2 pp. 159-173
ISSN:
2500-1396
Subject:
genotyping,   etc   ; Holstein; Jersey; alleles; ecotypes; genetic variation; heterozygosity; loci; microsatellite repeats;     Show all 9 Subjects
Abstract:
... The application of information-entropy analysis on real data is shown: 84 bulls of Jersey (n = 10), Ayrshire (n = 10), red Danish (n = 10), red Swedish (n = 9) breeds and Holstein ecotypes of German (n = 13), Dutch (n = 17) and North American (n = 15) breeding genotyped by 11 microsatellite loci. The Shannon information index for the combined breed samples was 1.695, the weighted average for the s ...
DOI:
10.30766/2072-9081.2022.23.2.159-173

19. New candidate genes of high productivity in North-Caucasian sheep using genome-wide association study (GWAS)

Author:
Alexander Krivoruchko; Olesya Yatsyk; Anastasiya Kanibolockaya
Source:
Animal gene 2022 v.23 pp. 200119
ISSN:
2352-4065
Subject:
genotyping,   etc   ; DNA; databases; genome-wide association study; introns; meat; phenotype; wool;     Show all 8 Subjects
Abstract:
... Genome-wide association study (GWAS) is a powerful tool for identifying loci and individual polymorphisms associated with economically important traits in various species of productive animals. The objective of this study was a genome-wide association search in sheep of the North-Caucasian meat and wool breed to identify single nucleotide polymorphisms (SNPs) associated with a class assessment det ...
DOI:
10.1016/j.angen.2021.200119

20. Single‐step genomic evaluation of Russian dairy cattle using internal and external information

Author:
Andrei A. Kudinov; Esa A. Mäntysaari; Timo J. Pitkänen; Ekaterina I. Saksa; Gert P. Aamand; Pekka Uimari; Ismo Strandén
Source:
Journal of animal breeding and genetics 2022 v.139 no.3 pp. 259-270
ISSN:
0931-2668
Subject:
genotyping,   etc   ; Holstein; Russia; dairy cattle; genomics; milk; milk yield; models; prediction;     Show all 9 Subjects
Abstract:
... Genomic data are widely used in predicting the breeding values of dairy cattle. The accuracy of genomic prediction depends on the size of the reference population and how related the candidate animals are to it. For populations with limited numbers of progeny‐tested bulls, the reference populations must include cows and data from external populations. The aim of this study was to implement state‐o ...
DOI:
10.1111/jbg.12660