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1. Re-evaluation of trends in atmospheric column transparency from pyrheliometer measurements in Madrid (1910–1929)

Author:
Aparicio, A.J.P.; Antón, M.; Gallego, M.C.; Sanchez-Lorenzo, A.; Vaquero, J.M.
Source:
Atmospheric research 2019 v.217 pp. 165-171
ISSN:
0169-8095
Subject:
microsatellite repeats,   etc   ; metadata; solar radiation; Europe;     Show all 4 Subjects
Abstract:
... The behavior of the surface solar radiation (SSR) during the first half of 20th century is an open issue due to the scarcity of SSR data during this period. This paper focuses on the re-evaluation of the pyrheliometer measurements in Madrid between September 1910 and January 1929. These records were formerly analyzed by Antón et al. (2014), reporting no statistically significant trends in the atmo ...
DOI:
10.1016/j.atmosres.2018.11.003

2. Characterization of Pleurotus djamor neohaplonts recovered by production of protoplasts and chemical dedikaryotization

Author:
Hernández, Abraham Sánchez; Valenzuela Cobos, Juan Diego; Martínez, Joel Herrera; Arce, Ramón Villanueva; de las Mercedes Gómez y Gomez, Yolanda; Segura, Paola Berenice Zarate; Aguilar, María Eugenia Garín; Lara, Hermilo Leal; del Toro, Gustavo Valencia
Source:
3 Biotech 2019 v.9 no.1 pp. 24
ISSN:
2190-572X
Subject:
microsatellite repeats,   etc   ; Pleurotus djamor; hybrids; phenotype; protoplasts;     Show all 5 Subjects
Abstract:
... Production of hybrid strains is accomplished by mating monosporic isolates or neohaplonts, obtained either by chemical dedikaryotization or by production of protoplast. However, differences in growth rate among recovered neohaplonts have been reported. The presence of phenotypic and genetic changes among the neohaplonts recovered either by chemical dedikaryotization or by production of protoplast, ...
DOI:
10.1007/s13205-018-1532-4

3. Molecular Verification of Putative Zygotic Seedlings in Different Intra-Specific Crosses in Mandarins (Citrus reticulata) by SSR Markers

Author:
Singh, Gurteg; Aulakh, Pushpinder Singh; Sarao, Navraj Kaur; Rattanpal, Harinder Singh; Sidhu, Gurupkar Singh
Source:
Agricultural research 2019 v.8 no.1 pp. 21-26
ISSN:
2249-720X
Subject:
microsatellite repeats,   etc   ; Citrus reticulata; hybridization; hybrids; mandarins; progeny; seedlings;     Show all 7 Subjects
Abstract:
... The molecular verification of different intra-specific mandarin hybrids was explored during 2014–2015. Simple sequence repeat (SSR) markers were employed to identify putative zygotic seedlings from hybrid progeny produced from different crosses in mandarin. The most informative SSR marker in the F₁ hybrids of ‘Daisy × Kinnow’ cross was CCSM170 which identified 73% of zygotic seedlings followed by ...
DOI:
10.1007/s40003-018-0355-1

4. Inter‐populational variation, but no‐annual variation within populations, in terms of reproductive size and genetic structure in a monocarpic perennial herb, Cardiocrinum cordatum var. glehnii

Author:
Hayafune, Takuma; Utech, Frederick H.; Ohara, Masashi
Source:
Plant species biology 2019 v.34 no.1 pp. 27-30
ISSN:
0913-557X
Subject:
microsatellite repeats,   etc   ; Cardiocrinum; deciduous forests; flowering; genetic variation; Japan;     Show all 6 Subjects
Abstract:
... Cardiocrinum cordatum var. glehnii (Liliaceae) is a monocarpic perennial herb living in temperate broad‐leaved deciduous forests. In the present study we examined the sizes (basal diameter of the stem and flower numbers) of flowering individuals and genetic diversity using microsatellite loci of 23 populations of C. cordatum var. glehnii in Hokkaido, Japan, over 2 years (2009 and 2010). As a resul ...
DOI:
10.1111/1442-1984.12226

5. Recombination and local population structure of the root endophytic fungus Glutinomyces brunneus based on microsatellite analyses

Author:
Nakamura, N.; Tanaka, C.; Takeuchi-Kaneko, Y.
Source:
Fungal ecology 2019 v.41 pp. 56-64
ISSN:
1754-5048
Subject:
microsatellite repeats,   etc   ; Castanopsis; Hyaloscyphaceae; Quercus serrata; endophytes; fungi; gene flow; genotype; linkage disequilibrium; population structure;     Show all 10 Subjects
Abstract:
... Dispersal limitation can affect the distribution pattern of organisms. Little is known, however, about the dispersal ecology of root endophytic fungi such as Glutinomyces brunneus (Hyaloscyphaceae, Helotiales), whose dispersal structure has not been observed. To examine gene flow on a local (<8 km) scale, we collected G. brunneus isolates from three sites encompassing four Quercus serrata- and Cas ...
DOI:
10.1016/j.funeco.2019.03.009

6. On the critical evaluation and confirmation of germline sequence variants identified using massively parallel sequencing

Author:
Kubiritova, Zuzana; Gyuraszova, Marianna; Nagyova, Emilia; Hyblova, Michaela; Harsanyova, Maria; Budis, Jaroslav; Hekel, Rastislav; Gazdarica, Juraj; Duris, Frantisek; Kadasi, Ludevit; Szemes, Tomas; Radvanszky, Jan
Source:
Journal of biotechnology 2019 v.298 pp. 64-75
ISSN:
0168-1656
Subject:
microsatellite repeats,   etc   ; DNA; alleles; bioinformatics; exons; genotype; germ cells; high-throughput nucleotide sequencing; statistics;     Show all 9 Subjects
Abstract:
... Although massively parallel sequencing (MPS) is becoming common practice in both research and routine clinical care, confirmation requirements of identified DNA variants using alternative methods are still topics of debate. When evaluating variants directly from MPS data, different read depth statistics, together with specialized genotype quality scores are, therefore, of high relevance. Here we r ...
DOI:
10.1016/j.jbiotec.2019.04.013

7. Assessment of relationships among and within Helichrysum Mill. (Asteraceae) species by using ISSR markers and morphological traits

Author:
Azizi, Narjes; Sheidai, Masoud; Mozaffarian, Valiollah; Arman, Mitra; Noormohammadi, Zahra
Source:
Hacquetia 2019 v.18 no.1 pp. 105-118
ISSN:
1854-9829
Subject:
microsatellite repeats,   etc   ; Helichrysum; fruits; genetic similarity; genetic variation; heterozygosity; loci; variance; Iran;     Show all 9 Subjects
Abstract:
... This study conducted to determine relationship among and within Iranian Helichrysum species (Asteraceae). In this study based on ISSR markers, the highest percentage of ISSR loci polymorphism (54.7%) occurred in H. armenium. The highest gene diversity over loci (1.224), Shannon’s Information Index (0.224%) and Expected Heterozygosity (0.142%) occurred in H. armenium (0.18) and the lowest of these ...
DOI:
10.2478/hacq-2018-0014

8. Genetic diversity and population structure of Saccharomyces cerevisiae strains isolated from traditional alcoholic beverages of Côte d'Ivoire

Author:
Tra Bi, Charles Y.; Amoikon, Tiemele L.S.; Kouakou, Clémentine A.; Noemie, Jacques; Lucas, Marine; Grondin, Cécile; Legras, Jean-Luc; N'guessan, Florent K.; Djeni, Theodore N.; Djè, Marcellin K.; Casaregola, Serge
Source:
International journal of food microbiology 2019 v.297 pp. 1-10
ISSN:
0168-1605
Subject:
microsatellite repeats,   etc   ; Saccharomyces cerevisiae; alleles; genetic variation; loci; population structure; wines; Cote d'Ivoire;     Show all 8 Subjects
Abstract:
... In order to assess the genetic diversity and population structure of indigenous S. cerevisiae from Côte d'Ivoire, a total of 170 strains were isolated from four traditional alcoholic beverages through nine regions. Microsatellite analysis performed at 12 loci revealed that strains of palm oil and raffia wine were genetically related, unlike those of tchapalo and ron wine which formed two s from pa ...
DOI:
10.1016/j.ijfoodmicro.2019.03.001

9. Characterization of Cellulose Synthase A (CESA) Gene Family in Eudicots

Author:
Nawaz, Muhammad Amjad; Lin, Xiao; Chan, Ting-Fung; Imtiaz, Muhammad; Rehman, Hafiz Mamoon; Ali, Muhammad Amjad; Baloch, Faheem Shehzad; Atif, Rana Muhammad; Yang, Seung Hwan; Chung, Gyuhwa
Source:
Biochemical genetics 2019 v.57 no.2 pp. 248-272
ISSN:
0006-2928
Subject:
microsatellite repeats,   etc   ; Angiospermae; biosynthesis; cell walls; cellulose synthase; genes; genomics; leaves; phylogeny; proteins; senescence (aging);     Show all 11 Subjects
Abstract:
... Cellulose synthase A (CESA) is a key enzyme involved in the complex process of plant cell wall biosynthesis, and it remains a productive subject for research. We employed systems biology approaches to explore structural diversity of eudicot CESAs by exon–intron organization, mode of duplication, synteny, and splice site analyses. Using a combined phylogenetics and comparative genomics approach cou ...
DOI:
10.1007/s10528-018-9888-z

10. Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing

Author:
Song, Hao; Yang, Meijie; Yu, Zhenglin; Zhang, Tao
Source:
Marine genomics 2019 v.44 pp. 74-77
ISSN:
1874-7787
Subject:
microsatellite repeats,   etc   ; Gastropoda; databases; developmental stages; pests; sequence analysis; transcription factors; transcriptome; unigenes; China;     Show all 10 Subjects
Abstract:
... The veined rapa whelk (Rapana venosa) is an important commercial gastropod in China but is also an important invasive pest worldwide. Lack of genome information restricts investigation of this species. Here we report the first full-length transcriptome database derived from six different developmental stages of the whelk obtained using the PacBio Iso-Seq. As a result, 88,162 high-quality and full- ...
DOI:
10.1016/j.margen.2018.10.002

11. Forensic characteristics and phylogenetic structure of Eastern Chinese Han populations residing along the Yangtze Basin revealed by 19 autosomal STR loci

Author:
Tao, Ruiyang; Wang, Shouyu; Jin, Ming; Liu, Yanting; Zhang, Jiashuo; Zhang, Suhua; Li, Chengtao
Source:
Molecular biology reports 2019 v.46 no.2 pp. 2541-2546
ISSN:
0301-4851
Subject:
microsatellite repeats,   etc   ; Chinese people; basins; forensic sciences; genetic distance; genetic relationships; loci; multidimensional scaling; phylogeny; China;     Show all 10 Subjects
Abstract:
... In present study, forensic parameters based on the population data of nineteen autosomal short tandem repeats (STRs) loci were estimated in Chinese Han populations from three riverfront areas of Yangtze Basin in Eastern China. The combined power of discrimination (CPD) were 0.9999999999999999999999883, 0.9999999999999999999999846 and 0.9999999999999999999999863, respectively. The combined power of ...
DOI:
10.1007/s11033-019-04633-w

12. Impact of different panels of microsatellite loci, different numbers of loci, sample sizes, and gender ratios on population genetic results in red deer

Author:
Reiner, Gerald; Lang, M.; Willems, H.
Source:
European journal of wildlife research 2019 v.65 no.2 pp. 25
ISSN:
1612-4642
Subject:
microsatellite repeats,   etc   ; Cervus elaphus; animals; females; genetic markers; genotype; genotyping; loci; males; population genetics; population structure;     Show all 11 Subjects
Abstract:
... Population genetic parameters from different studies might be significantly influenced by differences in sample size, fraction of males and females, marker number, and sets of markers used, reducing the comparability between studies. This hypothesis was tested on a red deer population of 205 individuals with an estimated size of 1000 animals. Four tests were performed: (1) the population was subdi ...
DOI:
10.1007/s10344-019-1262-x

13. Marker-assisted introgression of the major bacterial blight resistance genes, Xa21 and xa13, and blast resistance gene, Pi54, into the popular rice variety, JGL1798

Author:
Swathi, Gattu; Durga Rani, Ch. V.; Md, Jamaloddin; Madhav, M. Sheshu; Vanisree, S.; Anuradha, Ch.; Kumar, N. Ranjit; Kumar, N. Arun Prem; Kumari, K. Aruna; Bhogadhi, Sri Chandana; Ramprasad, E.; Sravanthi, P.; Raju, S. Krishnam; Bhuvaneswari, V.; Rajan, C. P. D.; Jagadeeswar, R.
Source:
Molecular breeding 2019 v.39 no.4 pp. 58
ISSN:
1380-3743
Subject:
microsatellite repeats,   etc   ; backcrossing; blight; cooking quality; genotyping; grain yield; heterozygosity; homozygosity; introgression; resistance genes; rice; India;     Show all 12 Subjects
Abstract:
... JGL1798 (Jagtial Sannalu) is a high yielding fine grain variety released for Telangana state, India, and highly susceptible to two major rice diseases, bacterial blight (BB) and blast. To improve JGL1798 for BB and blast resistance, two bacterial blight resistance genes (xa13 and Xa21) derived from improved Samba Mahsuri (B95-1) and one blast resistance gene (Pi54) from NLR145 have been introgress ...
DOI:
10.1007/s11032-019-0950-2

14. Fabrication of 3-D confined spaces with Au NPs: Superior dispersion and catalytic activity

Author:
Subhan, Fazle; Aslam, Sobia; Yan, Zifeng; Ahmad, Ayaz; Etim, U.J.
Source:
Journal of colloid and interface science 2019 v.540 pp. 371-381
ISSN:
0021-9797
Subject:
microsatellite repeats,   etc   ; adsorption; catalytic activity; methylene blue; nanogold; p-nitrophenol; porous media; silica; solvents;     Show all 9 Subjects
Abstract:
... Gold nanoparticles (Au NPs) as an active noble-metal site have received great attention because of its superior catalytic activity in diverse reactions. However, the activity of Au NPs is strongly dependent on its size and dispersion degree. Therefore, we developed an efficient solid-state reduction (SSR) strategy for the first time to promote the dispersion degree and size of Au NPs in template-o ...
DOI:
10.1016/j.jcis.2019.01.040

15. Assessment of genetic diversity in Lepidium sativum L. using inter simple sequence repeat (ISSR) marker

Author:
Kumar, Vinay; Yadav, Hemant Kumar
Source:
Physiology and molecular biology of plants 2019 v.25 no.2 pp. 399-406
ISSN:
0971-5894
Subject:
microsatellite repeats,   etc   ; Lepidium sativum; alleles; allelic variation; cluster analysis; functional foods; medicinal plants; variance; India;     Show all 9 Subjects
Abstract:
... Lepidium sativum L. is a fast-growing, edible and medicinal plant that belongs to the family Brassicaceae. Indian system of medicinal and health (ISHM) recognizes this plant as a source of several medicinal and nutraceutical factors. Ninety-four accessions collected from 19 states of India were assessed for genetic diversity using inter-simple sequence repeat (ISSR) marker. Ten ISSR primers amplif ...
DOI:
10.1007/s12298-018-0622-4

16. Evaluation of in vitro shoot multiplication and ISSR marker based assessment of somaclonal variants at different subcultures of vanilla (Vanilla planifolia Jacks)

Author:
Pastelín Solano, Miriam Cristina; Salinas Ruíz, Josafhat; González Arnao, María Teresa; Castañeda Castro, Odón; Galindo Tovar, María Elena; Bello Bello, Jericó Jabín
Source:
Physiology and molecular biology of plants 2019 v.25 no.2 pp. 561-567
ISSN:
0971-5894
Subject:
microsatellite repeats,   etc   ; Vanilla planifolia; genetic distance; in vitro regeneration; shoots; somaclonal variation;     Show all 6 Subjects
Abstract:
... The effect of subculture cycles on somaclonal variation of V. planifolia using intersimple sequence repeat (ISSR) markers was analyzed. Nodal segments of 2 cm in length were established in vitro and multiplied by 10 subculture cycles in Murashige and Skoog (MS) medium supplemented with 8.86 μM BAP (benzylaminopurine). After 45 days in each culture, the length and number of shoots per explant were ...
DOI:
10.1007/s12298-019-00645-9

17. Centaurea subsect. Phalolepis in Southern Italy: ongoing speciation or species overestimation? Genetic evidence based on SSRs analyses

Author:
Garcia-Jacas, Núria; López-Pujol, Jordi; López-Vinyallonga, Sara; Janaćković, Pedja; Susanna, Alfonso
Source:
Systematics and biodiversity 2019 v.17 no.2 pp. 93-109
ISSN:
1478-0933
Subject:
microsatellite repeats,   etc   ; Centaurea; climatic factors; genetic variation; models; mountains; niches; Adriatic Sea; Greece; Italy; Turkey (country);     Show all 11 Subjects
Abstract:
... In this paper, we investigated a set of narrow endemics of Centaurea subsect. Phalolepis from the mountains of South Italy (mainly Calabria and Salento), segregated from the widespread species Centaurea deusta, using microsatellite (SSR) markers. The goal was to analyse the genetic makeup (levels and structure) of C. deusta and the segregated species and verify whether genetic clusters were in agr ...
DOI:
10.1080/14772000.2018.1549617

18. Classification of tea (Camellia sinensis) landraces and cultivars in Kyoto, Japan and other regions, based on simple sequence repeat markers and restriction site-associated DNA sequencing analysis

Author:
Kubo, Nakao; Mimura, Yutaka; Matsuda, Tomohiro; Nagano, Atsushi J.; Hirai, Nobuhiro; Higashimoto, Shigekazu; Yoshida, Hiromi; Uemura, Norihiro; Fujii, Takao
Source:
Genetic resources and crop evolution 2019 v.66 no.2 pp. 441-451
ISSN:
0925-9864
Subject:
microsatellite repeats,   etc   ; Camellia sinensis; cultivars; landraces; sequence analysis; tea; wild relatives; China; Japan;     Show all 9 Subjects
Abstract:
... The tea plant (Camellia sinensis (L.) Kuntze) of Japan is now thought to have originated in China. Actual cultivation of tea plants presumably started in Kyoto, and then spread to other regions of Japan. Tea gardens used to be composed of heterogenic, seed-derived populations—landraces—selected for climatic preferences and cultivation methods. Cultivars were bred from landraces in the modern era. ...
DOI:
10.1007/s10722-018-0722-6

19. Current genetic diversity in eight local Chinese sheep populations

Author:
E, Guang-Xin; Ma, Yue-Hui; Chu, Ming-Xing; Hong, Qiong-Hua; Huang, Yong-Fu
Source:
Molecular biology reports 2019 v.46 no.1 pp. 1307-1311
ISSN:
0301-4851
Subject:
microsatellite repeats,   etc   ; alleles; crossing; genetic variation; genotyping; habitats; heterozygosity; hybrids; phylogeny; prediction; sheep; sheep breeds; China;     Show all 13 Subjects
Abstract:
... China has numerous local domestic sheep breeds. In this study, the genetic diversity of eight sheep populations was estimated using 17 microsatellites. Knowledge of such diversity provides novel insight into the degree of breed protection needed and the prediction of hybrid advantage. In total, 17 microsatellites were genotyped in 186 individuals from eight populations. The mean number of alleles ...
DOI:
10.1007/s11033-018-4445-8

20. ISSR Characterization and Quantification of Purpurin and Alizarin in Rubia cordifolia L. Populations from India

Author:
Natarajan, Sisubalan; Mishra, Priyanka; Vadivel, Malayaman; Basha, M. Ghouse; Kumar, Amit; Velusamy, Sundaresan
Source:
Biochemical genetics 2019 v.57 no.1 pp. 56-72
ISSN:
0006-2928
Subject:
microsatellite repeats,   etc   ; Rubia cordifolia; alizarin; chemical structure; densitometry; genetic variation; metabolites; therapeutics; India;     Show all 9 Subjects
Abstract:
... Rubia cordifolia L., is an industrially viable medicinal crop and is widely exploited for the therapeutic potential of its bioactive metabolite, purpurin. The present investigation aimed to explore the chemotypic and molecular variability in seven wild populations of R. cordifolia from South Eastern Ghats region of India. Thirty-eight individuals were assessed for molecular fingerprinting (ISSR ma ...
DOI:
10.1007/s10528-018-9875-4