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You searched for: Subject "microsatellite repeats" Remove constraint Subject: "microsatellite repeats"
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1. Is Lutjanus argentimaculatus genetically connected along the Arabian Sea and Bay of Bengal? A study using microsatellite markers

Author:
N. Vineesh; I. Shihab; K.V. Akhilesh; K.A. Sajeela; M. Muktha; A. Gopalakrishnan
Source:
Aquaculture 2023 v.562 pp. 738863
ISSN:
0044-8486
Subject:
microsatellite repeats,   etc   ; Bayesian theory; Lutjanus argentimaculatus; aquaculture; cluster analysis; gene flow; genetic resources; genetic structure; genetic variation; marine fish; multidimensional scaling; Arabian Sea; Bay of Bengal;     Show all 13 Subjects
Abstract:
... The mangrove red snapper, Lutjanus argentimaculatus, is a marine fish of key economic and cultural importance in the Indo-Pacific region. It is now considered much more of an important aquaculture species than capture fisheries. The present study aimed to reveal the genetic structure of this candidate species from the Arabian Sea and Bay of Bengal using microsatellite markers. Twelve microsatellit ...
DOI:
10.1016/j.aquaculture.2022.738863

2. PNA microprobe for label-free detection of expanded trinucleotide repeats

Author:
Narges Asefifeyzabadi; Grace Durocher; Kizito-Tshitoko Tshilenge; Tanimul Alam; Lisa M. Ellerby; Mohtashim H. Shamsi
Source:
RSC advances 2022 v.12 no.13 pp. 7757-7761
ISSN:
2046-2069
Subject:
microsatellite repeats,   etc   ; RNA; dielectric spectroscopy; mutation;     Show all 4 Subjects
Abstract:
... We present a PNA microprobe sensing platform to detect trinucleotide repeat mutation by electrochemical impedance spectroscopy. The microprobe platform discriminated Huntington's disease-associated CAG repeats in cell-derived total RNA with S/N 1 : 3. This sensitive, label-free, and PCR-free detection strategy may be employed in the future to develop biosensing platforms for the detection of a ple ...
DOI:
10.1039/d2ra00230b

3. Prevalence of apomixis in Jatropha: Is it significant?

Author:
Anoop Anand Malik; Vivek Kumar Singh; Shyam Sundar Sharma; Madan Singh Negi; Shashi Bhushan Tripathi
Source:
Biofuels 2022 v.13 no.3 pp. 365-369
ISSN:
1759-7277
Subject:
microsatellite repeats,   etc   ; Jatropha; apomixis; biofuels; progeny;     Show all 5 Subjects
Abstract:
... In the present study, we aimed to estimate the upper limit of apomixis occurring in Jatropha under field conditions. We used unlinked microsatellite and AFLP markers on progeny arrays of six individuals which were designed to facilitate the detection of apomixis events more efficiently than previous reports. With 5-7 microsatellite markers, 5 of 90 progenies were identical to their maternal parent ...
DOI:
10.1080/17597269.2019.1706280

4. A purine and a backbone discontinuous site alter the structure and thermal stability of DNA minidumbbells containing two pentaloops

Author:
Cheuk Kit Ngai; Sik Lok Lam; Hung Kay Lee; Pei Guo
Source:
FEBS letters 2022 v.596 no.6 pp. 826-840
ISSN:
0014-5793
Subject:
microsatellite repeats,   etc   ; DNA; neurodegenerative diseases; thermal stability;     Show all 4 Subjects
Abstract:
... Minidumbbell (MDB) is a noncanonical DNA structure found to form in several pyrimidine‐rich short tandem repeats associated with neurodegenerative diseases. The most recently reported MDB contains two pentaloops formed by ATTCT repeats. Here, we studied the effects of a purine residue and a backbone discontinuous site on the structure and thermal stability of MDBs containing two pentaloops. It was ...
DOI:
10.1002/1873-3468.14293

5. Evaluation of microfluidics‐based droplet PCR combined with multiplex STR system in forensic science

Author:
Qiang Zhu; Haoyu Wang; Yueyan Cao; Yuguo Huang; Yuhan Hu; Yijun Zhou; Yifan Wei; Xi Li; Tingyun Hou; Yuting Wang; Panyin Shu; Feng Song; Ji Zhang
Source:
Electrophoresis 2022 v.43 no.7-8 pp. 848-856
ISSN:
0173-0835
Subject:
microsatellite repeats,   etc   ; DNA; droplets; electrophoresis; forensic sciences;     Show all 5 Subjects
Abstract:
... Because of its excellent monodispersity, high throughput, and low volume, microfluidics‐based droplet PCR has become the core technology of digital PCR, next‐generation sequencing, and other technology platforms. This study constructed a microfluidic water‐in‐oil droplet PCR system and amplified a commercially available forensic 22‐plex short tandem repeat detection system. We analyzed the sensiti ...
DOI:
10.1002/elps.202100239

6. Evidence of multiple paternity for the endemic Xingu River stingray

Author:
Yan Torres; Patricia Charvet; Vicente V. Faria; Andrey L. F. de Castro
Source:
Journal of fish biology 2022 v.100 no.5 pp. 1315-1318
ISSN:
0022-1112
Subject:
microsatellite repeats,   etc   ; Potamotrygonidae; fish; freshwater; genotyping; paternity;     Show all 6 Subjects
Abstract:
... Multiple paternity (MP) is a phenomenon observed for more than 30 elasmobranch species. The Batoidea is more specious than the Selachii, but only three studies of MP have been conducted on batoids. The occurrence of MP in freshwater stingrays was tested using microsatellite markers, which were developed for Potamotrygon leopoldi. Six mothers and their litters were genotyped, providing the first ev ...
DOI:
10.1111/jfb.15038

7. Investigation of Linear Amplification Using Abasic Site-Containing Primers Coupled to Routine STR Typing for LT-DNA Analysis

Author:
Xiaoqin Qian; Zhimin Li; Zhihan Zhou; Jinglei Qian; Yining Yao; Chengchen Shao; Qiqun Tang; Jianhui Xie
Source:
Genes 2022 v.13 no.8 pp. -
ISSN:
2073-4425
Subject:
microsatellite repeats,   etc   ; DNA; DNA replication; forensic sciences; heterozygosity;     Show all 5 Subjects
Abstract:
... Obtaining a full short tandem repeat (STR) profile from a low template DNA (LT-DNA) still presents a challenge for conventional methods due to significant stochastic effects and polymerase slippage. A novel amplification method with a lower cost and higher accuracy is required to improve the DNA amount. Previous studies suggested that DNA polymerases without bypass activity could not perform proce ...
DOI:
10.3390/genes13081386

8. Design of microsatellite markers for Schizophyllum commune (Agaricales, Basidiomycota) based on analysis of its genome

Author:
S.M. Boiko
Source:
Ukrai̤nskyĭ botanychnyĭ zhurnal 2022 v.79 no.1 pp. 27-34
ISSN:
2415-8860
Subject:
microsatellite repeats,   etc   ; DNA; Schizophyllum commune; genome; phylogeny; population genetics;     Show all 6 Subjects
Abstract:
... Simple sequence repeats of DNA (SSRs) are the most popular source of genetic markers used in population genetics, phylogenetics, and genetic mapping. A large number of nucleotide repeats enriched in G and C were identified. 336 mononucleotide motifs with more than ten repeats were recorded. 2020 nucleotide repeats were identified, of which 97.4% are di- (68.2%) and trinucleotides (29.2%). The tota ...
DOI:
10.15407/ukrbotj79.01.027

9. Subalpine fir microsatellite variation reveals the complex relationship between var. lasiocarpa and var. bifolia

Author:
Kermit Ritland; Allyson Miscampbell; Charlie Cartwright; Nikhil Bohlmann; Carol Ritland
Source:
Canadian journal of forest research 2022 v.52 no.6 pp. 901-909
ISSN:
1208-6037
Subject:
microsatellite repeats,   etc   ; Abies lasiocarpa; forests; heterozygosity; research; North America;     Show all 6 Subjects
Abstract:
... Subalpine fir, Abies lasiocarpa, occurs throughout western North America, often in forest–tundra parkland. To resolve the presence of varieties in this species, we surveyed microsatellite genetic markers in 11 populations containing three putative varieties of Abies lasiocarpa: (1) var. lasiocarpa, (2) var. bifolia, and (3) var. arizonica. We tested primers from related taxa, and 13 of the best pr ...
DOI:
10.1139/cjfr-2021-0303

10. Comparative Chloroplast Genomes of Six Magnoliaceae Species Provide New Insights into Intergeneric Relationships and Phylogeny

Author:
Lin Yang; Jinhong Tian; Liu Xu; Xueli Zhao; Yuyang Song; Dawei Wang
Source:
Biology 2022 v.11 no.9 pp. -
ISSN:
2079-7737
Subject:
microsatellite repeats,   etc   ; Manglietia; Michelia; chloroplast genome; phylogeny; phytochemicals; trees;     Show all 7 Subjects
Abstract:
... Magnoliaceae plants are industrial tree species with high ornamental and medicinal value. We published six complete chloroplast genomes of Magnoliaceae by using Illumina sequencing. These showed a typical quadripartite structure of angiosperm and were 159,901–160,008 bp in size. A total of 324 microsatellite loci and six variable intergenic regions (Pi > 0.01) were identified in six genomes. Compa ...
DOI:
10.3390/biology11091279

11. Characterization of Microsatellite Loci for the Alligator Snapping Turtle and Cross-Amplification in Two Chelydrid Species†

Author:
Luke Pearson; Brian R. Kreiser; Carl P. Qualls
Source:
Chelonian conservation and biology 2022 v.21 no.1 pp. 130-135
ISSN:
1943-3956
Subject:
microsatellite repeats,   etc   ; Chelydra serpentina; Macrochelys temminckii; alligators; threatened species; turtles;     Show all 6 Subjects
Abstract:
... The alligator snapping turtle (Macrochelys temminckii) has been proposed as a Threatened species under the US Endangered Species Act and is considered Vulnerable by the International Union for the Conservation of Nature. To provide additional markers for conservation genetic studies, we identified 60 potential microsatellite loci, with 38 being polymorphic in M. temminckii, as well as successful c ...
DOI:
10.2744/CCB-1538.1

12. Oncogenic chimeric transcription factors drive tumor-specific transcription, processing, and translation of silent genomic regions

Author:
Julien Vibert; Olivier Saulnier; Céline Collin; Floriane Petit; Kyra J.E. Borgman; Jérômine Vigneau; Maud Gautier; Sakina Zaidi; Gaëlle Pierron; Sarah Watson; Nadège Gruel; Clémence Hénon; Sophie Postel-Vinay; Marc Deloger; Virginie Raynal; Sylvain Baulande; Karine Laud-Duval; Véronique Hill; Sandrine Grossetête; Florent Dingli; Damarys Loew; Jacob Torrejon; Olivier Ayrault; Martin F. Orth; Thomas G.P. Grünewald; Didier Surdez; Antoine Coulon; Joshua J. Waterfall; Olivier Delattre
Source:
Molecular cell 2022 v.82 no.13 pp. 2458-2471.e9
ISSN:
1097-2765
Subject:
microsatellite repeats,   etc   ; genes; genomics; peptides; proteomics; ribosomes; sarcoma; transcription (genetics);     Show all 8 Subjects
Abstract:
... Many cancers are characterized by gene fusions encoding oncogenic chimeric transcription factors (TFs) such as EWS::FLI1 in Ewing sarcoma (EwS). Here, we find that EWS::FLI1 induces the robust expression of a specific set of novel spliced and polyadenylated transcripts within otherwise transcriptionally silent regions of the genome. These neogenes (NGs) are virtually undetectable in large collecti ...
DOI:
10.1016/j.molcel.2022.04.019

13. Quantitative trait loci analysis for flower‐related traits in almond (Prunus dulcis)

Author:
Aibibula Paizila; Harun Karcı; Elmira Ziya Motalebipour; Murat Güney; Salih Kafkas
Source:
Plant breeding 2022 v.141 no.1 pp. 119-132
ISSN:
0179-9541
Subject:
microsatellite repeats,   etc   ; Prunus dulcis; almonds; flower color; phenotype; quantitative traits;     Show all 6 Subjects
Abstract:
... Almond is one of the most important nut crops in Turkey. Simple sequence repeat (SSR)‐based linkage maps are very reliable in constructing linkage maps due to the co‐dominant and highly reproducible nature of the SSR markers. The objective of this study was to construct well‐saturated, SSR‐based genetic linkage maps using ‘Gulcan‐2 × Lauranne’ and ‘Guara × Nurlu’ F₁ populations and to identify QTL ...
DOI:
10.1111/pbr.12986

14. Evaluation of the Impact of the Peregrine Falcon (Falco peregrinus peregrinus) Reintroduction Process on Captive-Bred Population

Author:
Karol O. Puchała; Zuzanna Nowak-Życzyńska; Sławomir Sielicki; Wanda Olech
Source:
Genes 2022 v.13 no.8 pp. -
ISSN:
2073-4425
Subject:
microsatellite repeats,   etc   ; Bayesian theory; Falco peregrinus; genetic structure; genetic variation;     Show all 5 Subjects
Abstract:
... The main objective of this study was to determine the impact of increased demand for peregrine falcons via breeding (mainly Polish, Czech, German and Slovak) on the genetic structure of the birds. In the analysis, 374 specimens from six countries were sampled in 2008–2019 (omitting 2009), and all the birds analyzed were released into the wild as part of the Polish reintroduction program. The asses ...
DOI:
10.3390/genes13081487

15. Microsatellites, morphological, and alkaloids characterization of Zephyranthes fosteri and Z. alba (Amaryllidaceae): Allopatric populations

Author:
Lucia Y. Centeno-Betanzos; Alfredo López-Caamal; Natalie Cortés Rendon; Mayra León Santiago; Edison Osorio; Jaume Bastida Armengol; Zenón Cano-Santana; Ricardo Reyes-Chilpa; Efraín Tovar-Sánchez
Source:
Biochemical systematics and ecology 2022 v.101 pp. 104398
ISSN:
0305-1978
Subject:
microsatellite repeats,   etc   ; Zephyranthes; allopatry; chemotaxonomy; lycorine; phenotypic plasticity; sympatry; Mexico;     Show all 8 Subjects
Abstract:
... Zephyranthes (Amaryllidaceae) is a taxonomically complex genus due to the frequent overlap of interspecific morphological variation. In Mexico, Z. alba and Z. fosteri are herbaceous plants that, when distributed in sympatry, generate individuals with complex patterns of morphological variation, leading to taxonomic confusion. Therefore, it is necessary to first characterize these species in allopa ...
DOI:
10.1016/j.bse.2022.104398

16. An 82 bp tandem repeat family typical of 3′ non-coding end of Gypsy/TAT LTR retrotransposons is conserved in Coffea spp. pericentromeres

Author:
Leonardo Adabo Cintra; Thaíssa Boldieri de Souza; Letícia Maria Parteka; Lucas Mesquita Barreto; Luiz Filipe Protasio Pereira; Marcos Letaif Gaeta; Romain Guyot; André Luís Laforga Vanzela
Source:
Genome 2022 v.65 no.3 pp. 137-151
ISSN:
1480-3321
Subject:
microsatellite repeats,   etc   ; DNA; allotetraploidy; centromeres; chromatin; genome; non-coding RNA; retrotransposons;     Show all 8 Subjects
Abstract:
... Coffea spp. chromosomes are very small and accumulate a variety of repetitive DNA families around the centromeres. However, the proximal regions of Coffea chromosomes remain poorly understood, especially regarding the nature and organisation of the sequences. Taking advantage of the genome sequences of C. arabica (2n = 44), C. canephora, and C. eugenioides (C. arabica progenitors with 2n = 22) and ...
DOI:
10.1139/gen-2021-0045

17. Genetic Evidence for Multiple Invasions of Coptotermes formosanus (Blattodea: Rhinotermitidae) in California

Author:
Shu-Ping Tseng; Siavash Taravati; Dong-Hwan Choe; Michael K. Rust; Chow-Yang Lee
Source:
Journal of economic entomology 2022 v.115 no.4 pp. 1251-1256
ISSN:
0022-0493
Subject:
microsatellite repeats,   etc   ; Blattodea; Coptotermes formosanus; entomology; genetic relationships; lakes; mitochondria; California;     Show all 8 Subjects
Abstract:
... New infestations of the Formosan subterranean termite, Coptotermes formosanus Shiraki (Blattodea: Rhinotermitidae), were discovered in southern California, namely in Rancho Santa Fe and La Mesa (San Diego County) and Highland Park (Los Angeles County) in 2021. We investigated whether these new infestations were related to the previous infestations in La Mesa (2018) and Canyon Lake, Riverside Count ...
DOI:
10.1093/jee/toac104

18. Information-entropy approach to the analysis of genetic diversity of populations (analytical review)

Author:
V. M. Kuznetsov
Source:
Agrarnaâ nauka Evro-Severo-Vostoka 2022 v.23 no.2 pp. 159-173
ISSN:
2500-1396
Subject:
microsatellite repeats,   etc   ; Holstein; Jersey; alleles; ecotypes; genetic variation; genotyping; heterozygosity; loci;     Show all 9 Subjects
Abstract:
... The application of information-entropy analysis on real data is shown: 84 bulls of Jersey (n = 10), Ayrshire (n = 10), red Danish (n = 10), red Swedish (n = 9) breeds and Holstein ecotypes of German (n = 13), Dutch (n = 17) and North American (n = 15) breeding genotyped by 11 microsatellite loci. The Shannon information index for the combined breed samples was 1.695, the weighted average for the s ...
DOI:
10.30766/2072-9081.2022.23.2.159-173

19. Microsatellite Characteristics of Silver Carp (Hypophthalmichthysmolitrix) Genome and Genetic Diversity Analysis in Four Cultured Populations

Author:
Yajun Wang; Hang Sha; Xiaohui Li; Tong Zhou; Xiangzhong Luo; Guiwei Zou; Yi Chai; Hongwei Liang
Source:
Genes 2022 v.13 no.7 pp. -
ISSN:
2073-4425
Subject:
microsatellite repeats,   etc   ; Bayesian theory; Hypophthalmichthys molitrix; fish; genetic variation; heterozygosity; China;     Show all 7 Subjects
Abstract:
... Hypophthalmichthys molitrix is one of the four most important fish in China and has high breeding potential. However, simple sequence repeat (SSR) markers developed on H. molitrix genome level for genetic diversity analysis are limited. In this study, the distribution characteristics of SSRs in the assembled H. molitrix genome were analyzed, and new markers were developed to preliminarily evaluate ...
DOI:
10.3390/genes13071267

20. Microsatellite markers as a tool for active germplasm management and bridging the gap between national and local collections of apple

Author:
Edward P. Venison; Suzanne Litthauer; Peter Laws; Caroline Denancé; Felicidad Fernández-Fernández; Charles-Eric Durel; Matthew Ordidge
Source:
Genetic resources and crop evolution 2022 v.69 no.5 pp. 1817-1832
ISSN:
0925-9864
Subject:
microsatellite repeats,   etc   ; apples; cultivars; evolution; fruits; genetic variation; germplasm; germplasm conservation;     Show all 8 Subjects
Abstract:
... Simple sequence repeat (SSR) microsatellite markers have been extensively used to identify duplication and analyse genetic diversity in germplasm collections of apple. Here, we present findings from the use of a standard set of SSR loci in the managed repropagation of a significant international germplasm collection: the UK National Fruit Collection (NFC). A subset of eight SSR loci was deemed suf ...
DOI:
10.1007/s10722-022-01342-5