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1. Re-evaluation of trends in atmospheric column transparency from pyrheliometer measurements in Madrid (1910–1929)

Author:
Aparicio, A.J.P.; Antón, M.; Gallego, M.C.; Sanchez-Lorenzo, A.; Vaquero, J.M.
Source:
Atmospheric research 2019 v.217 pp. 165-171
ISSN:
0169-8095
Subject:
microsatellite repeats,   etc   ; metadata; solar radiation; Europe;     Show all 4 Subjects
Abstract:
... The behavior of the surface solar radiation (SSR) during the first half of 20th century is an open issue due to the scarcity of SSR data during this period. This paper focuses on the re-evaluation of the pyrheliometer measurements in Madrid between September 1910 and January 1929. These records were formerly analyzed by Antón et al. (2014), reporting no statistically significant trends in the atmo ...
DOI:
10.1016/j.atmosres.2018.11.003

2. Characterization of Pleurotus djamor neohaplonts recovered by production of protoplasts and chemical dedikaryotization

Author:
Hernández, Abraham Sánchez; Valenzuela Cobos, Juan Diego; Martínez, Joel Herrera; Arce, Ramón Villanueva; de las Mercedes Gómez y Gomez, Yolanda; Segura, Paola Berenice Zarate; Aguilar, María Eugenia Garín; Lara, Hermilo Leal; del Toro, Gustavo Valencia
Source:
3 Biotech 2019 v.9 no.1 pp. 24
ISSN:
2190-572X
Subject:
microsatellite repeats,   etc   ; Pleurotus djamor; hybrids; phenotype; protoplasts;     Show all 5 Subjects
Abstract:
... Production of hybrid strains is accomplished by mating monosporic isolates or neohaplonts, obtained either by chemical dedikaryotization or by production of protoplast. However, differences in growth rate among recovered neohaplonts have been reported. The presence of phenotypic and genetic changes among the neohaplonts recovered either by chemical dedikaryotization or by production of protoplast, ...
DOI:
10.1007/s13205-018-1532-4

3. Prediction of DNA concentration in fingermarks using autofluorescence properties

Author:
Falkena, Kim; Hoveling, Richelle J.M.; van Weert, Angela; Lambrechts, Saskia A.G.; van Leeuwen, Ton G.; Aalders, Maurice C.G.; van Dam, Annemieke
Source:
Forensic science international 2019 v.295 pp. 128-136
ISSN:
0379-0738
Subject:
microsatellite repeats,   etc   ; DNA; biocompatible materials; crime; forensic sciences; prediction; quantitative polymerase chain reaction;     Show all 7 Subjects
Abstract:
... During criminal investigations trace DNA samples, including fingermarks, are submitted to laboratories for short tandem repeat (STR) analysis. For most common STR analysis systems a minimum amount of input DNA is required. Upon intake by the forensic laboratory the DNA concentration is estimated using quantitative polymerase chain reaction (qPCR) analysis after which most fingermarks are excluded. ...
DOI:
10.1016/j.forsciint.2018.12.005

4. Clonal propagation of cv. Italy grapes and the generation of genetic divergence among vineyards

Author:
Strioto, Danuza Kelly; Pepineli, Afonso Carrasco; Eisele, Tauana Gibim; Marinelli, Giovana Carniatto; Mangolin, Claudete A.; Cantagali, Liriana Belizário; Oliveira-Collet, Sandra A. de; Machado, Maria de Fátima P.S.
Source:
Scientia horticulturae 2019 v.244 pp. 263-269
ISSN:
0304-4238
Subject:
microsatellite repeats,   etc   ; genetic markers; genetic variation; grapes; loci; somatic mutation; vegetative propagation; vineyards; Brazil; Italy;     Show all 10 Subjects
Abstract:
... The genetic structure of vineyards with cv. Italy grapes, multiplied and maintained by vegetative propagation for more than fifty years in the region of Marialva, Brazil, was analyzed. Polymorphisms in 13 microsatellite loci and 14 ISSR markers were analyzed to estimate the genetic diversity indices of 57 plants obtained from four vineyards (V1 – V4). Higher genetic uniformity was detected by micr ...
DOI:
10.1016/j.scienta.2018.09.049

5. Transmission of early ripening trait related loci in grapevines from backbone cultivar Pearl of Csaba to its descendants

Author:
Guo, Da-Long; Zhao, Hui-Li; Zhang, Guo-Hai; Yu, Yi-He
Source:
Scientia horticulturae 2019 v.244 pp. 151-156
ISSN:
0304-4238
Subject:
microsatellite repeats,   etc   ; Vitis; breeding; cultivars; gene frequency; genomics; inheritance (genetics); loci; parents; ripening;     Show all 10 Subjects
Abstract:
... In order to dissect the inheritance of the grapevine early ripening trait, Pearl of Csaba, 32 derived varieties of Pearl of Csaba and 5 other parents for the breeding of the derived varieties were analyzed based on the SSR (Simple Sequence Repeats) markers. Fifty SSR markers evenly distributed on 19 chromosomes of grapevine were initially employed and only 36 markers could transmit to all the desc ...
DOI:
10.1016/j.scienta.2018.09.043

6. Comparison of diversity parameters from SNP, microsatellites and pedigree records in the Lidia cattle breed

Author:
Cortés, O.; Eusebi, P.; Dunner, S.; Sevane, N.; Cañón, J.
Source:
Livestock science 2019 v.219 pp. 80-85
ISSN:
1871-1413
Subject:
microsatellite repeats,   etc   ; genetic drift; genetic variation; homozygosity; inbreeding; loss of heterozygosity; pedigree; single nucleotide polymorphism;     Show all 8 Subjects
Abstract:
... Genetic drift, loss of heterozygosity and decrease in genetic variability are consequences of high rates of inbreeding over generations.. High density single nucleotide polymorphisms arrays offered new possibilities to estimate inbreeding coefficients more accurately than those from pedigree records or microsatellites genotypes. In the present study different inbreeding coefficients were estimated ...
DOI:
10.1016/j.livsci.2018.11.006

7. Genetic diversity, core collection and breeding history of Pleurotus ostreatus in China

Author:
Li, Jing; Liu, Xiao-Bin; Zhao, Zhi-Wei; Yang, Zhu L.
Source:
Mycoscience 2019 v.60 no.1 pp. 14-24
ISSN:
1340-3540
Subject:
microsatellite repeats,   etc   ; Pleurotus ostreatus; alleles; domestication; genetic background; genetic variation; hybridization; mushrooms; China; Europe;     Show all 10 Subjects
Abstract:
... Pleurotus ostreatus is one of the most widespread and favourably cultivated mushrooms in China. The cultivated strains of this species have been frequently exchanged domestically and internationally, but no detailed breeding history has been documented. The frequent domestic and international exchange of strains combined with a non-detailed historical documentation of breeding might have led to co ...
DOI:
10.1016/j.myc.2018.07.002

8. Development and application of SSR markers derived from Bauhinia Strychnifolia a semi-endemic plant in Thailand

Author:
Sraphet, Supajit; Chantravisut, Pattra; Srisawad, Nattaya; Suksee, Nawarat; Smith, Duncan R.; Triwitayakorn, Kanokporn
Source:
Journal of herbs, spices & medicinal plants 2018 v.24 no.4 pp. 386-393
ISSN:
1540-3580
Subject:
microsatellite repeats,   etc   ; Bauhinia; alleles; heterozygosity; loci; Thailand;     Show all 6 Subjects
Abstract:
... Bauhinia strychnifolia is a rare and semi-endemic plant in Thailand. Microsatellite-enriched libraries were constructed using (CT)₁₅/(CAG)₁₅ and (GT)₁₅/(AAG)₁₅ probes. Fourteen polymorphic loci produced a total of 104 alleles with a mean of 7.4 alleles per locus. The average expected and observed heterozygosity were 0.727 and 0.497, respectively. The polymorphism information content value ranged f ...
DOI:
10.1080/10496475.2018.1520775

9. Bicyclic and tricyclic C–C mismatch-binding ligands bind to CCG trinucleotide repeat DNAs

Author:
Shibata, Tomonori; Nakatani, Kazuhiko
Source:
Chemical communications 2018 v.54 no.51 pp. 7074-7077
ISSN:
1364-548X
Subject:
microsatellite repeats,   etc   ; aromatic compounds; chemical reactions; ligands;     Show all 4 Subjects
Abstract:
... We have reported bicyclic and tricyclic C–C mismatch-binding ligands that selectively bind to CCG trinucleotide repeat (TNR) DNAs. Bivalent interaction and enlarging the aromatic ring system of the cytosine-recognition unit led to the ligand binding to CCG TNRs accompanied by the formation of stable ligand–CCG TNR complexes and a large conformational change. ...
DOI:
10.1039/c8cc02393j

10. Validating dispersal distances inferred from autoregressive occupancy models with genetic parentage assignments

Author:
Hall, Laurie A.; Van Schmidt, Nathan D.; Beissinger, Steven R.
Source:
The journal of animal ecology 2018 v.87 no.3 pp. 691-702
ISSN:
0021-8790
Subject:
microsatellite repeats,   etc   ; models; parentage; wetlands; California;     Show all 5 Subjects
Abstract:
... Dispersal distances are commonly inferred from occupancy data but have rarely been validated. Estimating dispersal from occupancy data is further complicated by imperfect detection and the presence of unsurveyed patches. We compared dispersal distances inferred from seven years of occupancy data for 212 wetlands in a metapopulation of the secretive and threatened California black rail (Laterallus ...
DOI:
10.1111/1365-2656.12811

11. Natural pigment extraction optimization from coffee exocarp and its use as a natural dye in French meringue

Author:
Parra-Campos, Amanda; Ordóñez-Santos, Luis Eduardo
Source:
Food chemistry 2019 v.285 pp. 59-66
ISSN:
0308-8146
Subject:
microsatellite repeats,   etc   ; anthocyanins; artificial colors; coffee beans; color; cyanidin; exocarp; natural dyes; pH; response surface methodology; solvents;     Show all 11 Subjects
Abstract:
... This study aimed to optimize the pigment extraction process for coffee exocarp and to evaluate its coloring effect on French meringue. The anthocyanins were determined with the differential pH method and the process was optimized with the response surface methodology. The solvent concentration (SC) and solid solvent ratio (SSR) had a significant effect on the anthocyanin content and surface color ...
DOI:
10.1016/j.foodchem.2019.01.158

12. Sulfur dioxide response of Brettanomyces bruxellensis strains isolated from Greek wine

Author:
Dimopoulou, Maria; Hatzikamari, Magdalini; Masneuf-Pomarede, Isabelle; Albertin, Warren
Source:
Food microbiology 2019 v.78 pp. 155-163
ISSN:
0740-0020
Subject:
microsatellite repeats,   etc   ; diagnostic techniques; environmental factors; intraspecific variation; odors; phenotype; provenance; spoilage; sulfur dioxide; wine industry; wine yeasts; wines;     Show all 12 Subjects
Abstract:
... Brettanomyces bruxellensis is the most common spoilage wine yeast which can provoke great economic damage to the wine industry due to the production of undesirable odors. The capacity of the species to adapt in various environmental conditions offers a selective advantage that is reflected by intraspecific variability at genotypic and phenotypic level. In this study, microsatellite analysis of 22 ...
DOI:
10.1016/j.fm.2018.10.013

13. Genetic diversity and origin of the rare, narrow endemic Asperula crassifolia (Rubiaceae)

Author:
Gargiulo, Roberta; De Castro, Olga; Del Guacchio, Emanuele; Caputo, Paolo
Source:
Plant systematics and evolution 2019 v.305 no.3 pp. 181-192
ISSN:
0378-2697
Subject:
microsatellite repeats,   etc   ; Asperula; center of diversity; genetic variation; haplotypes; herbaria; intergenic DNA; introns; plastid DNA; population size; Italy;     Show all 11 Subjects
Abstract:
... We examined the patterns of genetic variation in the narrow endemic Asperula crassifolia (Campania, southern Italy), taking into account the schizoendemic distribution of the Mediterranean members of Asperula sect. Cynanchicae. We obtained plastid DNA sequences of the rps16 intron and the trnC-petN intergenic spacer for several members of A. sect. Cynanchicae, for three living populations (48 indi ...
DOI:
10.1007/s00606-018-1561-9

14. Paternity analysis using SSR markers reveals that the anthocyanin-rich tea cultivar ‘Ziyan’ is self-compatible

Author:
Tan, Li-Qiang; Liu, Qin-Ling; Zhou, Bin; Yang, Chun-Jing; Zou, Xue; Yu, Ye-Ying; Wang, Yue; Hu, Jin-Hao; Zou, Yao; Chen, Sheng-Xiang; Li, Pin-Wu; Tang, Qian
Source:
Scientia horticulturae 2019 v.245 pp. 258-262
ISSN:
0304-4238
Subject:
microsatellite repeats,   etc   ; Camellia sinensis; cultivars; fathers; genetic variation; genotyping; heterozygosity; inbreeding depression; open pollination; paternity; progeny; seeds; selfing; tea;     Show all 14 Subjects
Abstract:
... Most tea plants (Camellia sinensis) are self-incompatible. Self-incompatibility is critical for preventing inbreeding depression and maintaining genetic diversity, but it can hinder breeding and genetic studies. Originally, the propose of this study was to identify fathers of 16 elite F1 individuals derived from open-pollinated seeds of an anthocyanin-rich tea cultivar ‘Ziyan’. In order to achieve ...
DOI:
10.1016/j.scienta.2018.10.034

15. Genetic diversity in British populations of Taxus baccata L.: Is the seedbank collection representative of the genetic variation in the wild?

Author:
Gargiulo, Roberta; Saubin, Méline; Rizzuto, Gabriele; West, Bede; Fay, Michael F.; Kallow, Simon; Trivedi, Clare
Source:
Biological conservation 2019
ISSN:
0006-3207
Subject:
microsatellite repeats,   etc   ; Taxus baccata; botanical gardens; dioecy; gene flow; genetic variation; germplasm conservation; heterozygosity; seed collecting; seeds; trees; United Kingdom;     Show all 12 Subjects
Abstract:
... Seed banking is an invaluable tool in plant conservation, both as an archive and a source of genetic variation. Sampling strategies aimed at capturing genetic diversity have been developed and validated with mathematical and in silico approaches. However, few studies have empirically related diversity in seed bank collections with variation in wild-provenance populations. By using a set of nuclear ...
DOI:
10.1016/j.biocon.2019.01.014

16. Development of novel microsatellites for population genetic analysis of Phenacoccus solenopsis Tinsley (Hemipeta: Pseudoccoccidae) based on genomic analysis

Author:
Ma, Ling; Cao, Li-Jun; Gong, Ya-Jun; Hoffmann, Ary A.; Zeng, Ai-Ping; Wei, Shu-Jun; Zhou, Zhong-Shi
Source:
International journal of biological macromolecules 2019 v.121 pp. 1135-1144
ISSN:
0141-8130
Subject:
microsatellite repeats,   etc   ; Phenacoccus solenopsis; alleles; genetic analysis; genetic markers; genomics; heterozygosity; loci; pests; population genetics; population structure; China;     Show all 12 Subjects
Abstract:
... The cotton mealybug, Phenacoccus solenopsis Tinsley (Hemipeta: Pseudoccoccidae), is an aggressively invasive pest causing huge economic losses of crops around the world. In this study, we developed genome-wide microsatellites for population genetic analysis of P. solenopsis. We obtained a random genome of P. solenopsis with a size of 267.07 Mb and scaffold N50 of 14.12 Kb. In total 115,639 microsa ...
DOI:
10.1016/j.ijbiomac.2018.10.143

17. Pathotypic and molecular evolution of contemporary population of Puccinia striiformis f. sp. tritici in Egypt during 2016–2018

Author:
Draz, Ibrahim Sobhy
Source:
Phytopathologische Zeitschrift 2019 v.167 no.1 pp. 26-34
ISSN:
0931-1785
Subject:
microsatellite repeats,   etc   ; Puccinia striiformis f. tritici; ancestry; cluster analysis; evolution; mutation; pathogens; races; resistance genes; stripe rust; virulence; Egypt;     Show all 12 Subjects
Abstract:
... The contemporary races of Puccinia striiformis f. sp. tritici (Pst) in Egypt during 2016–2018 were differentiated based on virulence and molecular patterns. Virulence patterns based on the reaction of the 17 World/European differential sets carrying stripe rust resistance genes (Yr genes) resulted in ten races including four new (first recorded in Egypt) and six old (previously recorded in Egypt). ...
DOI:
10.1111/jph.12770

18. Range change evolution of peat mosses (Sphagnum) within and between climate zones

Author:
Shaw, A. Jonathan; Carter, Benjamin E.; Aguero, Blanka; da Costa, Denise Pinheiro; Crowl, Andrew A.
Source:
Global change biology 2019 v.25 no.1 pp. 108-120
ISSN:
1354-1013
Subject:
microsatellite repeats,   etc   ; Sphagnum; allopolyploidy; biogeography; biomass; carbon; cold zones; genomics; heterozygosity; latitude; loci; models; mosses and liverworts; peat; phylogeny; tropics;     Show all 16 Subjects
Abstract:
... Peat mosses (Sphagnum) hold exceptional importance in the control of global carbon fluxes and climate because of the vast stores of carbon bound up in partially decomposed biomass (peat). This study tests the hypothesis that the early diversification of Sphagnum was in the Northern Hemisphere, with subsequent range expansions to tropical latitudes and the Southern Hemisphere. A phylogenetic analys ...
DOI:
10.1111/gcb.14485

19. Classification of Korean native pear based on a standard set of microsatellite loci

Author:
Oh, Y.; Kim, S.; Shin, H.; Oh, S.; Won, J.; Oh, S. I.; Han, Y.; Kim, D.; Kim, Y.; Bassil, N.
Source:
Acta horticulturae 2017 no.1172 pp. 237-240
ISSN:
0567-7572
Subject:
microsatellite repeats,   etc   ; cultivars; pears; peas;     Show all 4 Subjects
Abstract:
... After analysis with 12 microsatellite loci previously selected for use by ECPGR, 34 Korean pear accessions were classified into 3 groups. Group I included 4 Korean pea pears and one accession of P. calleryana. Group II contained 12 cultivars including 7 accessions presumed to belong to P. pyrifolia. Group III contained 17 cultivars including 13 accessions presumed to belong to P. ussuriensis. The ...
DOI:
10.17660/ActaHortic.2017.1172.44

20. Application of homozygosis dominant SSR marker in longan hybrid authenticity identification

Author:
Jia, Lila; Dan-lin, Chen; Chao-ji, Liu; Li-jia, P.; Ya-ting, Wang; Lei, Hu; Zhenxian, Wu; Gui-bing, Hu; Jia-xin, Fu; Cheng-ming, Liu
Source:
Acta horticulturae 2018 no.1211 pp. 207-212
ISSN:
0567-7572
Subject:
microsatellite repeats,   etc   ; DNA; homozygosity; hybrids; loci; longans; parents; pollen;     Show all 8 Subjects
Abstract:
... In this study, two F1 longan hybrid populations named FDD265 and FDD97 were created in 2012, using 'Daguocaopu' as pollen parent, meanwhile 'FD265' and 'FD97' selected from 'Fengliduo' × 'Dawuyuan' (FD) F1 population as maternal parents, respectively. In order to obtain reliable hybrids, we developed to identify the hybrids using paternal homozygosis dominant marker. Firstly, using the parental ge ...
DOI:
10.17660/ActaHortic.2018.1211.30