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1. Correction to: Analysis of resistance genes of clinical Pannonibacter phragmitetus strain 31801 by complete genome sequencing

Author:
Ming, De-song; Chen, Qing-qing; Chen, Xiao-tin
Source:
Archives of microbiology 2018 v.200 no.10 pp. 1503
ISSN:
0302-8933
Subject:
resistance genes,   etc   ; bacteria; sequence analysis;     Show all 3 Subjects
Abstract:
... Subsequent to publication it has been noticed that the below listed text parts, figures and tables of the above paper were taken from paper ...
DOI:
10.1007/s00203-018-1579-y

2. Stronger When Together: Clustering of Plant NLR Disease resistance Genes

Author:
van Wersch, Solveig; Li, Xin
Source:
Trends in plant science 2019 v.24 no.8 pp. 688-699
ISSN:
1360-1385
Subject:
resistance genes,   etc   ; disease resistance; eukaryotic cells; genomics; immunity; leucine;     Show all 6 Subjects
Abstract:
... Gene clustering is rare in eukaryotes. However, nucleotide-binding leucine-rich repeat (NLR)-encoding disease resistance (R) genes show consistent clustering in plant genomes. These arrangements are likely to provide coregulatory benefits, as suggested by growing evidence that the gene products of both paired and larger clusters of NLRs act together in triggering immunity. Head-to-head gene pairs ...
DOI:
10.1016/j.tplants.2019.05.005

3. Bacteriophages as Environmental Reservoirs of Antibiotic Resistance

Author:
Calero-Cáceres, William; Ye, Mao; Balcázar, José Luis
Source:
Trends in microbiology 2019 v.27 no.7 pp. 570-577
ISSN:
0966-842X
Subject:
antibiotic resistance genes,   etc   ; antibiotic resistance; bacteriophages; public health;     Show all 4 Subjects
Abstract:
... Although antibiotic resistance represents a significant and growing public health concern, the contribution of bacteriophages (phages) to the mobilization of antibiotic resistance genes (ARGs) in the environment has not been extensively studied. Recent studies, however, suggest that phages play an important role in the acquisition, maintenance, and spread of ARGs than previously expected. This Opi ...
DOI:
10.1016/j.tim.2019.02.008

4. Influence of hydraulic retention time on behavior of antibiotics and antibiotic resistance genes in aerobic granular reactor treating biogas slurry

Author:
Liao, Jie; Liu, Chaoxiang; Liu, Lin; Li, Jie; Fan, Hongyong; Ye, Jiaqi; Zeng, Zhichao
Source:
Frontiers of environmental science & engineering 2019 v.13 no.3 pp. 31
ISSN:
2095-2201
Subject:
antibiotic resistance genes,   etc   ; biogas; fluoroquinolones; risk; sludge; slurries; sulfonamides; tetracyclines;     Show all 8 Subjects
Abstract:
... The behavior of antibiotics and the corresponding resistance genes in aerobic granular reactors for treating biogas slurry under different hydraulic retention times (10.7 h, R1; 8 h, R2) was investigated in this study. The results indicated that the hydraulic retention time could affect the effluent concentrations and removal efficiencies of sulfonamides. The average removal rates of tetracyclines ...
DOI:
10.1007/s11783-019-1115-6

5. Development of a multiplex-PCR to simultaneously detect acquired linezolid resistance genes cfr, optrA and poxtA in enterococci of clinical origin

Author:
Bender, Jennifer K.; Fleige, Carola; Klare, Ingo; Werner, Guido
Source:
Journal of microbiological methods 2019 v.160 pp. 101-103
ISSN:
0167-7012
Subject:
resistance genes,   etc   ; Enterococcus; diagnostic techniques; linezolid; polymerase chain reaction;     Show all 5 Subjects
Abstract:
... Linezolid-resistant enterococcus spp. are increasingly recognized by diagnostic laboratories. Resistance can be mediated by the expression of cfr, optrA or poxtA. We developed a multiplex-PCR to simultaneously detect all three genes. The PCR is suitable for microbiological diagnostics in order to restrict further spread of resistances in enterococci. ...
DOI:
10.1016/j.mimet.2019.03.025

6. Micro(nano)plastics: Unignorable vectors for organisms

Author:
Shen, Maocai; Zhu, Yuan; Zhang, Yaxin; Zeng, Guangming; Wen, Xiaofeng; Yi, Huan; Ye, Shujing; Ren, Xiaoya; Song, Biao
Source:
Marine pollution bulletin 2019 v.139 pp. 328-331
ISSN:
0025-326X
Subject:
antibiotic resistance genes,   etc   ; biofilm; ecological invasion; energy; microplastics; water pollution;     Show all 6 Subjects
Abstract:
... Micro(nano)plastics, as emerging contaminants, have attracted worldwide attention. Nowadays, the environmental distribution, sources, and analysis methods and technologies of micro(nano)plastics have been well studied and recognized. Nevertheless, the role of micro(nano)plastic particles as vectors for attaching organisms is not fully understood. In this paper, the role of micro(nano)plastics as v ...
DOI:
10.1016/j.marpolbul.2019.01.004

7. Correction to: Pm223899, a new recessive powdery mildew resistance gene identified in Afghanistan landrace PI 223899

Author:
Li, Genqiao; Carver, Brett F.; Cowger, Christina; Bai, Guihua; Xu, Xiangyang
Source:
Theoretical and applied genetics 2018 v.131 no.12 pp. 2785
ISSN:
0040-5752
Subject:
resistance genes,   etc   ; landraces; powdery mildew; Afghanistan;     Show all 4 Subjects
Abstract:
... Unfortunately, the caption of Fig. 2 was incorrectly published in the original publication. The complete correct caption should read as follows. ...
DOI:
10.1007/s00122-018-3226-z

8. Correction to: Fine mapping of powdery mildew resistance gene Pm4e in bread wheat (Triticum aestivum L.)

Author:
Ullah, Khan Nasr; Li, Na; Shen, Tao; Wang, Peisi; Tang, Wenbin; Ma, Shengwei; Zhang, Zhimeng; Jia, Haiyan; Kong, Zhongxin; Ma, Zhengqiang
Source:
Planta 2018 v.248 no.5 pp. 1329
ISSN:
0032-0935
Subject:
resistance genes,   etc   ; Triticum aestivum; powdery mildew; wheat;     Show all 4 Subjects
Abstract:
... Unfortunately, the style of the units was incorrectly published (“cm” instead of “cM”) throughout the original article. ...
DOI:
10.1007/s00425-018-2998-3

9. Correction to: Mapping and characterization of wheat stem rust resistance genes SrTm5 and Sr60 from Triticum monococcum

Author:
Chen, Shisheng; Guo, Yan; Briggs, Jordan; Dubach, Felix; Chao, Shiaoman; Zhang, Wenjun; Rouse, Matthew N.; Dubcovsky, Jorge
Source:
Theoretical and applied genetics 2018 v.131 no.11 pp. 2493
ISSN:
0040-5752
Subject:
resistance genes,   etc   ; Triticum monococcum; stem rust; wheat;     Show all 4 Subjects
Abstract:
... In the original publication, the IWGSC assembly is incorrectly referenced. ...
DOI:
10.1007/s00122-018-3194-3

10. Compatibility and entry exclusion of IncA and IncC plasmids revisited: IncA and IncC plasmids are compatible

Author:
Ambrose, Stephanie J.; Harmer, Christopher J.; Hall, Ruth M.
Source:
Plasmid 2018 v.96-97 pp. 7-12
ISSN:
0147-619X
Subject:
antibiotic resistance genes,   etc   ; nucleotide sequences; plasmids; terminology;     Show all 4 Subjects
Abstract:
... In an early study, IncA and IncC plasmids that were reported to be compatible were grouped as the “A-C complex” based on similarities and on strong entry exclusion. However, recently, the term IncA/C has been used frequently to describe plasmids belonging to both of these two groups. Granted that the supporting data was not included in the original reports and that the consensus iteron sequences h ...
DOI:
10.1016/j.plasmid.2018.02.002

11. Occurrence of antibiotic resistance genes in extracellular and intracellular DNA from sediments collected from two types of aquaculture farms

Author:
Yuan, Ke; Wang, Xiaowei; Chen, Xin; Zhao, Zhiqiang; Fang, Ling; Chen, Baoying; Jiang, Jie; Luan, Tiangang; Chen, Baowei
Source:
Chemosphere 2019 v.234 pp. 520-527
ISSN:
0045-6535
Subject:
antibiotic resistance genes,   etc   ; DNA; aminoglycosides; aquaculture farms; beta-lactams; pollution; ponds; rearing; sediments; sulfonamides; tetracyclines;     Show all 11 Subjects
Abstract:
... The occurrence and quantities of ARGs in extracellular and intracellular DNA (eARGs and iARGs) from sediments collected in two different types of aquaculture farms were investigated. A total of 20 ARG subtypes associated with 7 categories of commonly used antibiotics (e.g., aminoglycosides, beta-lactams, sulfonamides, tetracyclines) were identified, and some of these subtypes were not related to t ...
DOI:
10.1016/j.chemosphere.2019.06.085

12. Environmental and clinical antibiotic resistomes, same only different

Author:
Wright, Gerard D
Source:
Current opinion in microbiology 2019 v.51 pp. 57-63
ISSN:
1369-5274
Subject:
antibiotic resistance genes,   etc   ; antibiotics; bacteria; gene flow; genetic variation; human health; resistance mechanisms; risk;     Show all 8 Subjects
Abstract:
... The history of antibiotic use in the clinic is one of initial efficacy followed inevitably by the emergence of resistance. Often this resistance is the result of the capture and mobilization of genes that have their origins in environmental reservoirs. Both antibiotic production and resistance are ancient and widely distributed among microbes in the environment. This deep reservoir of resistance o ...
DOI:
10.1016/j.mib.2019.06.005

13. Fate of sulfonamide resistance genes during sludge anaerobic fermentation: Roles of sludge components and fermentation pHs

Author:
Chen, Yinguang; Huang, Haining; Zheng, Xiong
Source:
Bioresource technology 2019 v.289 pp. 121636
ISSN:
0960-8524
Subject:
resistance genes,   etc   ; bacteria; carbohydrates; fermentation; horizontal gene transfer; humic acids; pH; plasmids; sludge;     Show all 9 Subjects
Abstract:
... This study assessed potential effects of two neglected factors (sludge components and pH values) on the fate of sulfonamide (sul) resistance genes during sludge anaerobic fermentation. It was found that sludge with different contents of protein, carbohydrate and humic acid caused no significant changes in the abundances of sul genes. Nevertheless, sul genes were sensitive to pHs (4–10), and the ma ...
DOI:
10.1016/j.biortech.2019.121636

14. Expression of the nirS, hzsA, and hdh genes and antibiotic resistance genes in response to recovery of anammox process inhibited by oxytetracycline

Author:
Zhang, Qian-Qian; Zhao, Yi-Heng; Wang, Cheng-Jie; Bai, Yu-Hui; Wu, Dan; Wu, Jing; Tian, Guang-Ming; Shi, Man-Ling; Mahmood, Qaisar; Jin, Ren-Cun
Source:
The Science of the total environment 2019 v.681 pp. 56-65
ISSN:
0048-9697
Subject:
antibiotic resistance genes,   etc   ; anaerobic ammonium oxidation; bioaugmentation; heme; hulls; oxytetracycline; polymers; protein content; ribosomal RNA; sludge;     Show all 10 Subjects
Abstract:
... The inhibitory effects of oxytetracycline (OTC) on the anaerobic ammonium oxidation (anammox) performance were relieved by employing bio-augmentation (BA) tactics. However, the recovery mechanism was vague. The response of specific anammox activity (SAA), heme c, functional genes, extracellular polymeric substance (EPS) and antibiotics resistance genes (ARGs) to OTC inhibition and BA aid were trac ...
DOI:
10.1016/j.scitotenv.2019.04.438

15. Effects of inoculation with lignocellulose-degrading microorganisms on antibiotic resistance genes and the bacterial community during co-composting of swine manure with spent mushroom substrate

Author:
Hu, Ting; Wang, Xiaojuan; Zhen, Lisha; Gu, Jie; Zhang, Kaiyu; Wang, Qianzhi; Ma, Jiyue; Peng, Huiling
Source:
Environmental pollution 2019 v.252 pp. 110-118
ISSN:
0269-7491
Subject:
antibiotic resistance genes,   etc   ; bacteria; bacterial communities; composting; interspersed repetitive sequences; pig manure; risk; spent mushroom compost;     Show all 8 Subjects
Abstract:
... Composting is usually employed to treat livestock manure, and inoculation with lignocellulose-degrading microorganisms can enhance the quality of compost. In this study, lignocellulose-degrading microorganisms were inoculated at two levels (uninoculated control = 0%, and T treatment = 10%) during co-composting of swine manure with spent mushroom substrate, and their effects on antibiotic resistanc ...
DOI:
10.1016/j.envpol.2019.05.078

16. Feasibility of anaerobic packed and structured-bed reactors for sulfamethoxazole and ciprofloxacin removal from domestic sewage

Author:
Carneiro, Rodrigo B.; Sabatini, Carolina A.; Santos-Neto, Álvaro J.; Zaiat, Marcelo
Source:
The Science of the total environment 2019 v.678 pp. 419-429
ISSN:
0048-9697
Subject:
resistance genes,   etc   ; antibiotics; bacteria; biodegradation; biomass; bioreactors; ciprofloxacin; drugs; kinetics; sewage; sewage treatment; sorption; sulfamethoxazole;     Show all 13 Subjects
Abstract:
... This study assessed the applicability of fixed bed bioreactors in two configurations - anaerobic structured bed reactor (ASBR) and anaerobic packed bed reactor (APBR) - in the removal of Sulfamethoxazole (SMX) and Ciprofloxacin (CIP), two antibiotics frequently detected in sanitary sewage. The problem of these pharmaceuticals as emerging contaminants in conventional sewage treatment systems is mai ...
DOI:
10.1016/j.scitotenv.2019.04.437

17. Cell surface immune receptors: the guardians of the plant’s extracellular spaces

Author:
Kanyuka, Kostya; Rudd, Jason J
Source:
Current opinion in plant biology 2019 v.50 pp. 1-8
ISSN:
1369-5266
Subject:
resistance genes,   etc   ; disease resistance; immune response; immune system; immunologic receptors; models; pathogens;     Show all 7 Subjects
Abstract:
... Since the original ‘Zigzag model’, several iterations have been proposed to reconcile both the Pattern Triggered Immunity (PTI) and the Effector Triggered Immunity (ETI) branches of the plant immune system. The recent cloning of new disease resistance genes, functioning in gene-for-gene interactions, which structurally resemble cell surface broad spectrum Pattern Recognition Receptors, have furthe ...
DOI:
10.1016/j.pbi.2019.02.005

18. Mobilization of Microbiota Commensals and Their Bacteriocins for Therapeutics

Author:
Hols, Pascal; Ledesma-García, Laura; Gabant, Philippe; Mignolet, Johann
Source:
Trends in microbiology 2019 v.27 no.8 pp. 690-702
ISSN:
0966-842X
Subject:
antibiotic resistance genes,   etc   ; Streptococcus salivarius; antibiotics; bacteria; bacteriocins; disease control; pathogens; therapeutics;     Show all 8 Subjects
Abstract:
... With the specter of resurgence of pathogens due to the propagation of antibiotic-resistance genes, innovative antimicrobial strategies are needed. In this review, we summarize the beneficial aspects of bacteriocins, a set of miscellaneous peptide-based bacterium killers, compared with classical antibiotics, and emphasize their use in cocktails to curb the emergence of new resistance. We highlight ...
DOI:
10.1016/j.tim.2019.03.007

19. High Prevalence of Colistin Resistance Genes in German Municipal Wastewater

Author:
David, Kneis,; U., Berendonk, Thomas; Stefanie, Heß,
Source:
The Science of the total environment 2019
ISSN:
0048-9697
Subject:
resistance genes,   etc   ; bacteria; colistin; metagenomics; microbial communities; municipal wastewater; ribosomal RNA; risk; Germany;     Show all 9 Subjects
Abstract:
... Bacterial resistance against the last-resort antibiotic colistin is of increasing concern on a global scale. Wastewater is suspected to be one of the pathways by which resistant bacteria and the respective genes are disseminated. We employed a metagenomics approach to detect and quantify colistin resistance genes in raw municipal wastewater sampled at 9 locations all over Germany (14 samples in to ...
DOI:
10.1016/j.scitotenv.2019.07.260

20. ARGA, a pipeline for primer evaluation on antibiotic resistance genes

Author:
Wei, Ziyan; Wu, Yueni; Feng, Kai; Yang, Min; Zhang, Yu; Tu, Qichao; Wang, Jun; Deng, Ye
Source:
Environment international 2019 v.128 pp. 137-145
ISSN:
0160-4120
Subject:
antibiotic resistance genes,   etc   ; amino acid sequences; antibiotics; databases; metagenomics; molecular biology; nucleotide sequences; oligodeoxyribonucleotides; surveys;     Show all 9 Subjects
Abstract:
... Molecular biology techniques have assisted in the investigation of antibiotic resistance genes (ARGs) from various environments. However, their accuracy relies on primer quality and data interpretation, both of which require a full-coverage sequence database for ARGs. Here, based upon the abandoned Antibiotic Resistance Genes Database (ARDB), we created an updated sequence database of antibiotic r ...
DOI:
10.1016/j.envint.2019.04.030