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1. Erratum to: Hahyoungchilella caricis gen. nov., sp. nov., isolated from a rhizosphere mudflat of a halophyte (Carex scabrifolia), transfer of Thioclava arenosa Thongphrom et al. 2017 to Pseudothioclava as Pseudothioclava arenosa gen. nov., comb. nov. and proposal of Thioclava electrotropha Chang et al. 2018 as a later heterosynonym of Thioclava sediminum

Author:
Kim, Young-Ju; Lee, Soon Dong
Source:
The journal of microbiology 2020 v.58 no.4 pp. 341
ISSN:
1225-8873
Subject:
rhizosphere,   etc   ; Carex; halophytes; microbiology; new combination; new genus; new species;     Show all 7 Subjects
Abstract:
... In the article by Kim and Lee published in Journal of Microbiology 2019; 57, 1048–1055, The sentence ‘The type strain of Pseudothioclava arenosa is CAU 1312ᵀ (=KCTC 52190ᵀ = NBRC 111989ᵀ).’ should be added in the section ‘Description of Pseudothioclava arenosa comb. nov’ on 12th line of page 1054. ...
DOI:
10.1007/s12275-020-9725-z

2. Alleviated Antibiotic-Resistant Genes in the Rhizosphere of Agricultural Soils with Low Antibiotic Concentration

Author:
Song, Mengke; Peng, Ke; Jiang, Longfei; Zhang, Dayi; Song, Dandan; Chen, Guoen; Xu, Huijuan; Li, Yongtao; Luo, Chunling
Source:
Journal of agricultural and food chemistry 2020 v.68 no.8 pp. 2457-2466
ISSN:
1520-5118
Subject:
rhizosphere,   etc   ; agricultural soils; antibiotic resistance genes; antibiotics; crops; manure amendments;     Show all 6 Subjects
Abstract:
... The influence of the rhizosphere on the abundance and diversity of antibiotic resistance genes (ARGs) has been recognized but there is a lack of consensus because of broad ranges of plant species and antibiotic concentrations across different habitats and the elusive underlying mechanisms. Here, we profiled antibiotic concentrations and resistomes in the rhizosphere and bulk soils by cultivating 1 ...
DOI:
10.1021/acs.jafc.9b06634

3. Correction to: Modeling the temporal distribution of water, ammonium-N, and nitrate-N in the root zone of wheat using HYDRUS-2D under conservation agriculture

Author:
Shafeeq, Poomadathil Mohammed; Aggarwal, Pramila; Krishnan, Prameela; Rai, Vikas; Pramanik, Pragati; Das, Tapas Kumar
Source:
Environmental science and pollution research international 2020 v.27 no.2 pp. 2217-2225
ISSN:
0944-1344
Subject:
rhizosphere,   etc   ; agricultural conservation practice; ammonium nitrogen; models; nitrate nitrogen; wheat;     Show all 6 Subjects
Abstract:
... The original publication of this paper contains a mistake. ...
DOI:
10.1007/s11356-019-07225-0

4. Different Height Forms of Spartina alterniflora Might Select Their Own Rhizospheric Bacterial Communities in Southern Coast of China

Author:
Lin, Li’an; Liu, Wenwen; Zhang, Manping; Lin, Xiaolan; Zhang, Yihui; Tian, Yun
Source:
Microbial ecology 2019 v.77 no.1 pp. 124-135
ISSN:
0095-3628
Subject:
rhizosphere; rhizosphere bacteria,   etc   ; Spartina alterniflora; bacterial communities; coasts; genes; China;     Show all 7 Subjects
Abstract:
... In the southernmost part of coast of China, two height forms of Spartina alterniflora, tall and short, have invaded Leizhou Peninsula within the last decade. However, the effect of different height forms of Spartina alterniflora on plant–microbe interaction has not been clarified. Here, the community structures of rhizosphere bacteria and the abundance of N- and S-cycling functional genes associat ...
DOI:
10.1007/s00248-018-1208-y

5. Naturally selected dominant weeds as heavy metal accumulators and excluders assisted by rhizosphere bacteria in a mining area

Author:
Wang, Jiaxin; Xiong, Yue; Zhang, Jiaen; Lu, Xuening; Wei, Guangchang
Source:
Chemosphere 2020 v.243 pp. 125365
ISSN:
0045-6535
Subject:
rhizosphere; rhizosphere bacteria,   etc   ; Chloroflexi; Cyanobacteria; Digitaria sanguinalis; Fimbristylis; Ludwigia; bacterial communities; cadmium; copper; forbs; grasses; heavy metals; hyperaccumulators; lead; mining; phytoremediation; weeds; zinc; China;     Show all 20 Subjects
Abstract:
... Managers need more practical and promising plants for use in heavy metal phytoremediation. Although previous studies have identified the potential of some weeds and microbial strains in phytoremediation, the potential of dominant weeds and the relationship between weeds and their rhizosphere bacterial strains are still unknown. In our study, we examined dominant weeds in the Dabaoshan mine located ...
DOI:
10.1016/j.chemosphere.2019.125365

6. Root filtering, rather than host identity or age, determines the composition of root-associated fungi and oomycetes in three naturally co-occurring Brassicaceae

Author:
Maciá-Vicente, Jose G.; Nam, Bora; Thines, Marco
Source:
Soil biology & biochemistry 2020 v.146 pp. 107806
ISSN:
0038-0717
Subject:
rhizosphere,   etc   ; Brassicaceae; DNA barcoding; Helotiales; Peronosporales; community structure; fungal communities; microbiome; plant tissues; soil; soil fungi;     Show all 11 Subjects
Abstract:
... The plant family Brassicaceae includes some of the most studied hosts of plant microbiomes, improving our knowledge of microbial diversity, community assembly rules, and effects on host performance. Compared to bacteria, eukaryotes in the microbiome of Brassicaceae remain understudied, especially under field conditions. Here, we assessed the impact of host identity and age on the assembly of funga ...
DOI:
10.1016/j.soilbio.2020.107806

7. Variations in the concentrations of macro- and trace elements in two grasses and in the rhizosphere soil during a day

Author:
Shtangeeva, Irina; Vīksna, Arturs; Bērtiņš, Māris; Ryumin, Alexander; Grebnevs, Vladlens
Source:
Environmental pollution 2020 v.262 pp. 114265
ISSN:
0269-7491
Subject:
rhizosphere,   etc   ; Elymus repens subsp. repens; grasses; nutrients; roots; soil; soil sampling; trace elements;     Show all 8 Subjects
Abstract:
... The aim of the research was to study short-term variations in concentrations of 17 elements in two widely distributed natural plant species (couch grass and plantain) and in the rhizosphere soil of the plants. The plant and soil samples were collected in a field from a small site over a daytime. In the course of the day, the variations of the total amounts of C, N, and H in the rhizosphere soil we ...
DOI:
10.1016/j.envpol.2020.114265

8. Rhizosphere Microbiome Assembly and Its Impact on Plant Growth

Author:
Qu, Qian; Zhang, Zhenyan; Peijnenburg, W. J. G. M.; Liu, Wanyue; Lu, Tao; Hu, Baolan; Chen, Jianmeng; Chen, Jun; Lin, Zhifen; Qian, Haifeng
Source:
Journal of agricultural and food chemistry 2020 v.68 no.18 pp. 5024-5038
ISSN:
1520-5118
Subject:
rhizosphere,   etc   ; disease resistance; metabolites; microbial communities; microbiome; microorganisms; plant growth; roots;     Show all 8 Subjects
Abstract:
... Microorganisms colonizing the plant rhizosphere provide a number of beneficial functions for their host. Although an increasing number of investigations clarified the great functional capabilities of rhizosphere microbial communities, the understanding of the precise mechanisms underlying the impact of rhizosphere microbiome assemblies is still limited. Also, not much is known about the various be ...
DOI:
10.1021/acs.jafc.0c00073

9. Hydraulic redistribution driven by roots: Modeling and simulation case for the Pantanal

Author:
Sallo, Fernando da Silva; Júnior, Osvaldo Borges Pinto; Dalmagro, Higo José
Source:
International journal of ecohydrology & hydrobiology 2020 v.20 no.2 pp. 243-255
ISSN:
1642-3593
Subject:
rhizosphere,   etc   ; Richards' equation; drainage; evapotranspiration; hydrologic cycle; models; root systems; roots; soil water; water uptake; Pantanal;     Show all 11 Subjects
Abstract:
... Evapotranspiration is the major component of the water cycle excluding precipitation. Evapotranspiration sub-processes represent important paths of water which have been poorly investigated and may play an important role in the water cycle. Two of these sub-processes are root water uptake (RWU) and root hydraulic redistribution (RHR), which were modelled and numerically explored in this study. Bot ...
DOI:
10.1016/j.ecohyd.2019.12.005

10. The effect of organic acids on the behaviour and biodegradation of 14C-phenanthrene in contaminated soil

Author:
Vázquez-Cuevas, Gabriela M.; Lag-Brotons, Alfonso J.; Ortega-Calvo, Jose J.; Stevens, Carly J.; Semple, Kirk T.
Source:
Soil biology & biochemistry 2020 v.143 pp. 107722
ISSN:
0038-0717
Subject:
rhizosphere,   etc   ; bioavailability; biodegradation; desorption; exudation; hydrocarbons; malic acid; pollutants; polluted soils; root exudates; soil microorganisms;     Show all 11 Subjects
Abstract:
... The interaction between root exudates and soil microbes has been hypothesised as the primary mechanism for the biodegradation of organic pollutants in the rhizosphere. However, the mechanisms governing this loss process are not completely understood. This study aimed to investigate the effect of two important compounds within root exudates (citric and malic acid) on ¹⁴C-phenanthrene desorption and ...
DOI:
10.1016/j.soilbio.2020.107722

11. Translocation of pharmaceuticals and personal care products after land application of biosolids

Author:
Kinney, Chad A.; Heuvel, Brian Vanden
Source:
Current opinion in environmental science & health 2020 v.14 pp. 23-30
ISSN:
2468-5844
Subject:
rhizosphere,   etc   ; biosolids; drugs; land application; microorganisms; personal care products; wastewater treatment;     Show all 7 Subjects
Abstract:
... Pharmaceuticals and personal care products (PPCPs) are common components of the municipal waste stream and well documented to be present in the final products of wastewater treatment including biosolids, which are commonly land applied in agricultural settings and at reclamation sites. Biosolids are therefore an identified source of PPCPs into environments, where biosolids are applied. Here, we re ...
DOI:
10.1016/j.coesh.2019.11.004

12. Virulence from the rhizosphere: ecology and evolution of Burkholderia pseudomallei-complex species

Author:
French, Christopher T; Bulterys, Philip L; Woodward, Cora L; Tatters, Avery O; Ng, Ken R; Miller, Jeff F
Source:
Current opinion in microbiology 2020 v.54 pp. 18-32
ISSN:
1369-5274
Subject:
rhizosphere,   etc   ; Burkholderia mallei; Burkholderia pseudomallei; evolution; glanders; humans; melioidosis; nutrients; pathogens; predation; virulence;     Show all 11 Subjects
Abstract:
... Burkholderia pseudomallei (Bp) and Burkholderia mallei (Bm) cause the often-lethal infectious diseases melioidosis and glanders, respectively. Curiously, closely related species within the Bp complex share a nearly identical arsenal of virulence traits, yet are harmless to humans. Clues to the origin of virulence in this group can be found in their genetics and ecology. As a resident of the rhizos ...
DOI:
10.1016/j.mib.2019.12.004

13. Comparative effects on arsenic uptake between iron (hydro)oxides on root surface and rhizosphere of rice in an alkaline paddy soil

Author:
Yang, Yongqiang; Hu, Hongqing; Fu, Qingling; Xing, Zhiqiang; Chen, Xingyu; Zhu, Jun
Source:
Environmental science and pollution research international 2020 v.27 no.7 pp. 6995-7004
ISSN:
0944-1344
Subject:
rhizosphere,   etc   ; Oryza sativa; alkaline soils; arsenic; bioavailability; brown rice; genotype; iron; oxides; paddy soils; roots;     Show all 11 Subjects
Abstract:
... The iron (Fe) (hydro)oxides deposited around rice roots play an important role in arsenic (As) sequestration in paddy soils, but there is no systematic study on the relative importance of Fe (hydro)oxides on root surface and in rhizosphere soil in limiting As bioavailability. Twenty-seven rice genotypes were selected to investigate effects of Fe (hydro)oxides on As uptake by rice in an alkaline pa ...
DOI:
10.1007/s11356-019-07401-2

14. Pectin drives microbial phosphorus solubilization in soil: Evidence from isolation-based and community-scale approaches

Author:
Mise, Kazumori; Koyama, Yuki; Matsumoto, Arisa; Fujita, Kazuki; Kunito, Takashi; Senoo, Keishi; Otsuka, Shigeto
Source:
European journal of soil biology 2020 v.97 pp. 103169
ISSN:
1164-5563
Subject:
rhizosphere,   etc   ; coevolution; genes; genomics; metal ions; microbial biomass; oxides; pectins; phosphates; phosphorus; soil; soil microorganisms; solubilization;     Show all 13 Subjects
Abstract:
... A considerable part of soil phosphorus is bound to metal cations or metal oxides, and cannot be used in these forms by soil microbes and plants. Phosphate-solubilizing bacteria (PSB) are abundant in pectin-rich rhizosphere, and their pectin-degrading activity has been reported. Therefore, we hypothesized that pectin activates PSB and promotes soil phosphorus solubilization. To test this hypothesis ...
DOI:
10.1016/j.ejsobi.2020.103169

15. Bridging the Gap Between Single-Strain and Community-Level Plant-Microbe Chemical Interactions

Author:
O’Banion, Bridget S.; O’Neal, Lindsey; Alexandre, Gladys; Lebeis, Sarah L.
Source:
Molecular plant-microbe interactions 2020 v.33 no.2 pp. 124-134
ISSN:
0894-0282
Subject:
rhizosphere,   etc   ; chemical interactions; experimental design; host plants; microbial communities; microbiome; microscopy; phyllosphere; tissues;     Show all 9 Subjects
Abstract:
... Although the influence of microbiomes on the health of plant hosts is evident, specific mechanisms shaping the structure and dynamics of microbial communities in the phyllosphere and rhizosphere are only beginning to become clear. Traditionally, plant–microbe interactions have been studied using cultured microbial isolates and plant hosts but the rising use of ‘omics tools provides novel snapshots ...
DOI:
10.1094/MPMI-04-19-0115-CR

16. Two rapid and sensitive methods based on TaqMan qPCR and droplet digital PCR assay for quantitative detection of Bacillus subtilis in rhizosphere

Author:
Xie, Shanshan; Yu, Hengguo; Wang, Qi; Cheng, Yifeng; Ding, Ting
Source:
Journal of applied microbiology 2020 v.128 no.2 pp. 518-527
ISSN:
1364-5072
Subject:
rhizosphere,   etc   ; Arabidopsis; Bacillus subtilis; droplets; genes; plant growth-promoting rhizobacteria; quantitative polymerase chain reaction;     Show all 7 Subjects
Abstract:
... AIMS: Bacillus subtilis, a typical plant growth‐promoting rhizobacteria, can benefit plant through promoting growth and reducing disease. The colonization intensity of B. subtilis in rhizosphere is a key factor for improving their effectiveness of field application. In this study, we developed a rapid and sensitive method for detecting B. subtilis in rhizosphere via TaqMan qPCR and droplet digital ...
DOI:
10.1111/jam.14481

17. Phenolic acids and terpenoids in the soils of different weed-suppressive circles of allelopathic rice

Author:
Li, Jia Yu; Lin, Shun Xian; Zhang, Qi; Li, Li; Hu, Wen Wen; He, Hai Bin
Source:
Archiv für Acker- und Pflanzenbau und Bodenkunde 2020 v.66 no.2 pp. 266-278
ISSN:
1476-3567
Subject:
rhizosphere,   etc   ; Echinochloa crus-galli; benzoic acid; cinnamic acid; monoterpenoids; phenolic acids; rice; soil;     Show all 8 Subjects
Abstract:
... Allelopathic rice ‘PI312777’ (PI) and non-allelopathic rice ‘Lemont’ (Le) were used to assess phenolic acids and terpenoids in the soils of different circles using inhibitory-circle method. The rhizosphere soils of rice (inner circle) and barnyard grass at a 12 cm distance from rice (outer circle) were collected for analyses. The results showed total content of phenolic acids in outer circle of PI ...
DOI:
10.1080/03650340.2019.1610560

18. Corrigendum to: Description of Xiphinema hangzhouense sp. n. (Nematoda: Longidoridae) from the rhizosphere of Magnolia grandiflora in Hangzhou, Zhejiang Province, China (Nematology 20 (2018), 67-80. DOI: 10.1163/15685411-00003125)

Author:
Cai, Ruihang; Maria, Munawar; Barsalote, Eda Marie; Subbotin, Sergei A.; Zheng, Jingwu
ISSN:
1388-5545
Subject:
rhizosphere,   etc   ; Magnolia grandiflora; Xiphinema; new species; China;     Show all 5 Subjects
Abstract:
... The above-mentioned paper was submitted with an incomplete address for the authors Ruihang Cai and Munawar Maria. The correct address should be as follows: ...
DOI:
10.1163/15685411-00003293

19. Phytoremediation of pharmaceutical-contaminated wastewater: Insights into rhizobacterial dynamics related to pollutant degradation mechanisms during plant life cycle

Author:
Li, Yifei; Lian, Jie; Wu, Bing; Zou, Hua; Tan, Soon Keat
Source:
Chemosphere 2020 v.253 pp. 126681
ISSN:
0045-6535
Subject:
rhizosphere; rhizosphere bacteria,   etc   ; Actinobacteria; Typha angustifolia; amino acids; ammonia; bacterial communities; bolting; constructed wetlands; fatty acids; genes; ibuprofen; longevity; metabolism; microbiome; phosphorus; phytoremediation; pollutants; ribosomal RNA; root exudates; seedlings; wastewater; wastewater treatment;     Show all 23 Subjects
Abstract:
... Rhizobacterial dynamics, relating to pollutant degradation mechanisms, over the course of plant lifespan have rarely been reported when using phytoremediation technologies for pharmaceutical-contaminated wastewater treatment. This study investigated the rhizobacterial dynamics of Typha angustifolia in constructed wetlands to treat ibuprofen (IBP)-polluted wastewater throughout plant development fr ...
DOI:
10.1016/j.chemosphere.2020.126681

20. Biochar mediates microbial communities and their metabolic characteristics under continuous monoculture

Author:
Wu, Hongmiao; Qin, Xianjin; Wu, Huiming; Li, Feng; Wu, Jiachun; Zheng, Ling; Wang, Juanying; Chen, Jun; Zhao, Yanlin; Lin, Sheng; Lin, Wenxiong
Source:
Chemosphere 2020 v.246 pp. 125835
ISSN:
0045-6535
Subject:
rhizosphere; rhizosphere bacteria,   etc   ; Bacillus pumilus; Burkholderia ambifaria; Fusarium oxysporum; Pseudomonas chlororaphis; Talaromyces; beneficial microorganisms; biochar; environmental factors; field experimentation; fungi; metabolism; metabolomics; microbial communities; mycelium; pathogens; plant growth; soil; tissue culture; virulence;     Show all 21 Subjects
Abstract:
... Biochar amendment has been extensively used to improve plant performance and suppress disease in monoculture systems; however, few studies have focused on the underlying control mechanisms of replanting disease. In this study, we assessed the effects of biochar application on Radix pseudostellariae plant growth, rhizosphere soil microbial communities, and the physiological properties of microorgan ...
DOI:
10.1016/j.chemosphere.2020.125835