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Skermanella rubra sp. nov., a bacterium isolated from the desert of Xinjiang, China

Author:
Zhang, Zheng-Yun, Gao, Xu-Hong, Zhang, Yun-Jiao, Jia, Man, Lu, Xiao-Ju, Ma, Yong-Chun, Tian, Fei, Xie, Qiong, Tang, Shu-Kun
Source:
Antonie van Leeuwenhoek 2015 v.108 no.3 pp. 627-632
ISSN:
0003-6072
Subject:
DNA, Skermanella, bacteria, desert soils, fatty acids, isoprenoids, new species, nucleic acid hybridization, nucleotide sequences, pH, phosphatidylcholines, phosphatidylethanolamines, ribosomal RNA, sequence homology, sodium chloride, China
Abstract:
A Gram-negative, pink-coloured, rod-shaped, motile bacterium, designated YIM 93097ᵀ, was isolated from the desert soil collected from Xinjiang province of China. Strain YIM 93097ᵀ was found to grow at 20–45 °C (optimum 28–37 °C), pH 5.0–7.0 (optimum pH 7.0) and 0–8 % (w/v) NaCl (optimum 1 %, w/v). Based on 16S rRNA gene sequence similarity studies, it belongs to the genus Skermanella. The 16S rRNA gene sequence similarity was identified to be 98.7 % to Skermanella xinjiangensis CCTCC AB 207153ᵀ while the DNA–DNA hybridization value was found to be only 48.1 %. The predominant isoprenoid quinone was determined to be Q-10. The major fatty acids were identified to be C₁₆:₀, C₁₈:₁ ω7c and summed feature 4 (consisting of C₁₇:₁ anteiso B/iso I). The major polar lipids were identified as phosphatidylcholine, phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, two unidentified phospholipids and one unidentified aminolipid. The DNA G+C content was found to be 67.2 mol %. The analysis of the genotypic and phenotypic data indicated that strain YIM 93097ᵀ belongs to a novel species of the genus Skermanella, for which the name Skermanella rubra sp. nov. is proposed. The type strain is YIM 93097ᵀ (=DSM 21389ᵀ=CCTCC AB 2015161ᵀ).
Agid:
4393090