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Bacterial and archaeal ammonia oxidizers respond differently to long-term tillage and fertilizer management at a continuous maize site

Segal, Lauren M., Miller, Daniel. N., McGhee, Ryan P., Loecke, Terrence D., Cook, Kimberly L., Shapiro, Charles A., Drijber, Rhae A.
Soil & tillage research 2017 v.168 pp. 110-117
ammonia, bacteria, biomass, corn, discing, fatty acid methyl esters, fertilizer rates, genes, growing season, microbial communities, nitrogen fertilizers, no-tillage, oxidants, quantitative polymerase chain reaction, soil, soil ecology, soil microorganisms
Fertilizer use and tillage affect both the general soil microbial community and specific N-utilizing microbial groups, but likely to varying degrees. To assess these impacts, soil was collected on three key dates from a long-term (26+ years), rainfed, continuous maize site where tillage (no-till and disk) and N fertilizer rates (0, 40, 80, 120, and 160kgha−1yr−1) were applied. Microbial community changes were assessed using fatty acid methyl esters (FAME), and ammonia oxidizer (AO) changes were followed using quantitative PCR. Ammonia-oxidizing archaea (AOA) greatly outnumbered ammonia-oxidizing bacteria (AOB) based upon amoA gene copy (108 versus 104g−1 soil, respectively), and both populations were dynamic across sampling dates. Over the long term, tillage had a differential effect; AOB were almost 10-fold lower in disk tillage plots, but AOA did not differ. N rate had no effect on ammonia-oxidizers abundance, but a moderate correlation (r=0.423) between AOB and N rate was observed. AOA correlated moderately (r=0.552) with water-filled pore space. In contrast, the biomass of various microbial groups was highly responsive to sample date, tillage, and N rate. This study found that long-term agronomic practices affected the overall microbial community more than the AO community, while short-term changes over a growing season were surprisingly dynamic for both AO and select groups within the general soil community.