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ASAR: visual analysis of metagenomes in R

Author:
Orakov, Askarbek N, Sakenova, Nazgul K, Sorokin, Anatoly, Goryanin, Igor I
Source:
Bioinformatics 2018 v.34 no.8 pp. 1404-1405
ISSN:
1460-2059
Subject:
bioinformatics, metagenomics, microbial communities, taxonomy
Abstract:
Functional and taxonomic analyses are critical steps in understanding interspecific interactions within microbial communities. Currently, such analyses are run separately, which complicates interpretation of results. Here we present the ASAR interactive tool for simultaneous analysis of metagenomic data in three dimensions: taxonomy, function, metagenome. An interactive data analysis tool for selection, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation results is available. Source code of the ASAR is accessible at GitHub (https://github.com/Askarbek-orakov/ASAR).
Agid:
6249276