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Genome-Wide Distribution of Novel Ta-3A1 Mini-Satellite Repeats and Its Use for Chromosome Identification in Wheat and Related Species

Author:
Lang, Tao, Li, Guangrong, Yu, Zhihui, Ma, Jiwei, Chen, Qiheng, Yang, Ennian, Yang, Zujun
Source:
Agronomy 2019 v.9 no.2
ISSN:
2073-4395
Subject:
DNA, Triticum, chromosome aberrations, chromosomes, fluorescence in situ hybridization, genome, germplasm, grasses, linkage groups, oligonucleotides, satellite DNA, sequence analysis, tandem repeat sequences, wheat
Abstract:
A large proportion of the genomes of grasses is comprised of tandem repeats (TRs), which include satellite DNA. A mini-satellite DNA sequence with a length of 44 bp, named Ta-3A1, was found to be highly accumulated in wheat genome, as revealed by a comprehensive sequence analysis. The physical distribution of Ta-3A1 in chromosomes 3A, 5A, 5B, 5D, and 7A of wheat was confirmed by nondenaturing fluorescence in situ hybridization (ND-FISH) after labeling the oligonucleotide probe. The analysis of monomer variants indicated that rapid sequence amplification of Ta-3A1 occurred first on chromosomes of linkage group 5, then groups 3 and 7. Comparative ND-FISH analysis suggested that rapid changes occurred in copy number and chromosomal locations of Ta-3A1 among the different species in the tribe Triticeae, which may have been associated with chromosomal rearrangements during speciation and polyploidization. The labeling and subsequent use of Ta-3A1 by ND-FISH may assist in the precise identification and documentation of novel wheat germplasm engineered by chromosome manipulation.
Agid:
6469494