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Analysis of Chromosomal Numbers, Mitochondrial Genome, and Full-Length Transcriptome of Onychostoma brevibarba

Author:
Hu, Fangzhou, Fan, Jingjing, Wu, Chang, Zhu, Ming, Zhou, Yunfan, Wang, Shi, Zhang, Chun, Tao, Min, Zhao, Rurong, Tang, Chenchen, Luo, Kaikun, Qin, Qinbo, Ma, Ming, Chen, Bo, Wang, Jinpu, Zhou, Aiguo, Bai, Liangxiong, Liu, Shaojun
Source:
Marine biotechnology 2019 v.21 no.4 pp. 515-525
ISSN:
1436-2228
Subject:
Onychostoma, basins, chromosome number, chromosomes, data collection, diploidy, genomics, karyotyping, mitochondrial genome, rivers, tissues, transcriptome, unigenes, China, Yangtze River
Abstract:
Onychostoma brevibarba is a new discovered species which is distributed in Xiang Jiang River of the middle Chang Jiang basin in Hunan Province, South China. In this study, the ploidy levels of O. brevibarba were confirmed by counting chromosomal numbers and analyzing karyotype. The complete mitochondrial genome of O. brevibarba was determined and analyzed. Besides, we firstly performed the full-length transcriptome of O. brevibarba derived from 5 different tissues using the PacBio SMRT sequencing. The result shows that O. brevibarba was a diploid with 48 chromosomes. The complete mitogenome of O. brevibarba was 16,602 bp in size and very similar (89.1–91.3%) to that of other Onychostoma species but was distinct from all congeners. The full-length transcriptome dataset of O. brevibarba comprised 120,239 unigenes. Among the unigenes, 91,542 were functionally annotated, whereas 26,794 were found to have two or more isoforms. This study could provide many new insights into cytology and molecular characteristics of O. brevibarba; it laid the foundation for further exploration of the genomic signatures of species of Onychostoma.
Agid:
6557081